Non-Coding RNA Search

Ss1.1-Pig4-TMW8052L04.5

Sequence:


               
               CTGGGCAGCTCCTCCGGGTCCGCTTCCCCGGCCGTGGCCGAGCTCTGCCAGAACACCCCG
GAGACCTTCCTGGAGGCCTCCAAGCTGTTGCTCACCTACGCGGATAACATCCTCAGAAAC
CCTAATGATGAAAAATATAGATCTATCCGGATTGGAAACACAACTTTTTCTACTAGACTT
TTGCCTGTCAGAGGAGCTGTTGAATGTTTATTTGAAATGGGCTTTGAAGAGGGAGAAACG
CATCTTATCTTTCCTAAAAAAGCTTCAGTGGAGCAGCTGCAAAAAATTCGTGACCTGATT
GCCATAGAGAGAAGTAGCAGACTGGATGGATCAAATAAGAGCCCCAAAGTAGATGTATCT
CAGCAACTTGAAACCAGTACCCCGCTTCCTACAACACAGTCTTCAAATCGTAATGGGTTA
ACCCAGCACCCAGGGAACAGTGAAGGGCAGTCATCAAATCCACCATCTGCCCCAATGGTT
CCACTCCTTGGTGTTCGCCAGAGATTGAACCTGCTGGTGCCACAGCTGTAACCAGAGCCA
CATCAATGACATCACTGGATCCTTAACTGGGGAACTCCCAACAATAACTTCTATAATAAT
TTTTTTTAGATAGAATTTGGGAGTGATATATTTTCTGCATTGTTAGATGTCAGAAAATGT
GTTTAATGGAGTTTCCTGGCAGCCTAATGGGTTGAGGATCTGGCATTGTCACTTCTGTGG
TACAGGTTCAGTCCCTAGCCCAGGAACTTCTGCATGCTAAGAGCATGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGCAGCTCCTCCGGGTCCGCTTCCCCGGCCGTGGCCGAGCTCTGCCAGAACACCCCG
GAGACCTTCCTGGAGGCCTCCAAGCTGTTGCTCACCTACGCGGATAACATCCTCAGAAAC
CCTAATGATGAAAAATATAGATCTATCCGGATTGGAAACACAACTTTTTCTACTAGACTT
TTGCCTGTCAGAGGAGCTGTTGAATGTTTATTTGAAATGGGCTTTGAAGAGGGAGAAACG
CATCTTATCTTTCCTAAAAAAGCTTCAGTGGAGCAGCTGCAAAAAATTCGTGACCTGATT
GCCATAGAGAGAAGTAGCAGACTGGATGGATCAAATAAGAGCCCCAAAGTAGATGTATCT
CAGCAACTTGAAACCAGTACCCCGCTTCCTACAACACAGTCTTCAAATCGTAATGGGTTA
ACCCAGCACCCAGGGAACAGTGAAGGGCAGTCATCAAATCCACCATCTGCCCCAATGGTT
CCACTCCTTGGTGTTCGCCAGAGATTGAACCTGCTGGTGCCACAGCTGTAACCAGAGCCA
CATCAATGACATCACTGGATCCTTAACTGGGGAACTCCCAACAATAACTTCTATAATAAT
TTTTTTTAGATAGAATTTGGGAGTGATATATTTTCTGCATTGTTAGATGTCAGAAAATGT
GTTTAATGGAGTTTCCTGGCAGCCTAATGGGTTGAGGATCTGGCATTGTCACTTCTGTGG
TACAGGTTCAGTCCCTAGCCCAGGAACTTCTGCATGCTAAGAGCATGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|53136932|emb|CAG32795.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|53136932|emb|CAG32795.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               230-479, gnl|bosTau2|chr27 (26548911-26549160)
               

               
               230-479, gnl|Hg17|chr3 (25780808-25780559)
               

               
               230-479, gnl|Mm7|chr14 (14075787-14076027)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               230-479, gnl|bosTau2|chr27 (26548911-26549160)
               

               
               230-479, gnl|Hg17|chr3 (25780808-25780559)
               

               
               230-479, gnl|Mm7|chr14 (14075787-14076027)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	230-479, gnl\|bosTau2\|chr27 (26548911-26549160)
	230-479, gnl\|Hg17\|chr3 (25780808-25780559)
	230-479, gnl\|Mm7\|chr14 (14075787-14076027)