Non-Coding RNA Search

Ss1.1-Pig4-TMW8052L10.3

Sequence:


               
               TTATTATTTTTTAAGCAGTTCCTTAGCAATGATAGCAGGTGGCCGTGAACACCAGAAAAG
CAGTGCTGGTTCTCCGGGCCAAGTTTCTTATGCTGGTTCCTAGCCCCACTGCCAAAAGCA
CTGTTTTCGTCTTTGGTTGGTATGTTTGTGCTTTTTTTGTTTTTGTCCTTTAGGGCCACA
CCTGCACCATTTGGAAGTTCCCAGGCTAGGGGTCGAATCCGAGCCACAGCCACAGCAGTG
CGGGATCCAAGCTGTGTCTGTGACCTACACCACAGCTCATGGCAACGCTGGATCCTCAAC
CCACTGAGTGAGGCCAGGGATCCAACCAGCATCCTCATGGGTACTCATCAGGTTCATTAC
CACTAAGCCACAACGGGAACTCCAAGAGCATTGTTCTAATCAAATATTTCCATCCCTTTC
TGACTCCGTGGCTCCCACCAAAATGAACATCCTCACATTCTGAAGGAATTAAATAAACAG
CCTCCAAAATGTCTCCTTTAACTTCATGGAGTTAAGTCACTTTTTCTGTAAAATGTGGCT
TTTGACCTTGACAATGACTTACCCTGTCCACACAGAGGAAGAGTATTATCCCTCCGCCAA
GTGATGGGAAAAATGGGGGAAAAAGTTCAGTGTTATCATTTGTGGCGTTTGTTAATTTTT
AAAAAATTGCATGTCTTCCTTAGACACTACGGTTTATTTTATTTTATTTTATTTTTTACA
CCTACATAGCACATGATTTGGTGGCGATAAAGCACGTATACGTTGGGAGTGGACAGAGAT
ATGTGCGATCCTTTATACAGAGAGAATAGACTAAAACGTGCAGCTAAGTTAGATATAACC
CAGTTTTGGAAGTATCAGACATTCAGGAATATTTTTTAGCACCTTTTGCTTTAAAAAAAA
AAAAAAGTGCCTTGATTCAGTCACTTGACTTTAAAACATTCCTCTTAGTTTATTGTTATT
TTTAGGATGTATTCTGACCCCAACCTGTGTCATAGGATGCAGCCAGTCGGCTGCGATCAT
AGCATGTGTTCTGTTCCAATAATGGACACCAAAGAAGTAATCAGATGGGATTTAGCTGCT
ACCGTCGTGTGATTGAAAGGCGTCTTAATCACACCAGGTGTCCATGGCCCAGACAGTCGA
GGCCTGCCATTTGTTTTCTATTTCAGGTCGGAGTAAATTTGCACTTTTTAATCATATGGG
TCATTGGGGGACCTTGTTCTTTCATCCTTTGCTTTATTAATAAAGGAACTTATGGGAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATTATTTTTTAAGCAGTTCCTTAGCAATGATAGCAGGTGGCCGTGAACACCAGAAAAG
CAGTGCTGGTTCTCCGGGCCAAGTTTCTTATGCTGGTTCCTAGCCCCACTGCCAAAAGCA
CTGTTTTCGTCTTTGGTTGGTATGTTTGTGCTTTTTTTGTTTTTGTCCTTTAGGGCCACA
CCTGCACCATTTGGAAGTTCCCAGGCTAGGGGTCGAATCCGAGCCACAGCCACAGCAGTG
CGGGATCCAAGCTGTGTCTGTGACCTACACCACAGCTCATGGCAACGCTGGATCCTCAAC
CCACTGAGTGAGGCCAGGGATCCAACCAGCATCCTCATGGGTACTCATCAGGTTCATTAC
CACTAAGCCACAACGGGAACTCCAAGAGCATTGTTCTAATCAAATATTTCCATCCCTTTC
TGACTCCGTGGCTCCCACCAAAATGAACATCCTCACATTCTGAAGGAATTAAATAAACAG
CCTCCAAAATGTCTCCTTTAACTTCATGGAGTTAAGTCACTTTTTCTGTAAAATGTGGCT
TTTGACCTTGACAATGACTTACCCTGTCCACACAGAGGAAGAGTATTATCCCTCCGCCAA
GTGATGGGAAAAATGGGGGAAAAAGTTCAGTGTTATCATTTGTGGCGTTTGTTAATTTTT
AAAAAATTGCATGTCTTCCTTAGACACTACGGTTTATTTTATTTTATTTTATTTTTTACA
CCTACATAGCACATGATTTGGTGGCGATAAAGCACGTATACGTTGGGAGTGGACAGAGAT
ATGTGCGATCCTTTATACAGAGAGAATAGACTAAAACGTGCAGCTAAGTTAGATATAACC
CAGTTTTGGAAGTATCAGACATTCAGGAATATTTTTTAGCACCTTTTGCTTTAAAAAAAA
AAAAAAGTGCCTTGATTCAGTCACTTGACTTTAAAACATTCCTCTTAGTTTATTGTTATT
TTTAGGATGTATTCTGACCCCAACCTGTGTCATAGGATGCAGCCAGTCGGCTGCGATCAT
AGCATGTGTTCTGTTCCAATAATGGACACCAAAGAAGTAATCAGATGGGATTTAGCTGCT
ACCGTCGTGTGATTGAAAGGCGTCTTAATCACACCAGGTGTCCATGGCCCAGACAGTCGA
GGCCTGCCATTTGTTTTCTATTTCAGGTCGGAGTAAATTTGCACTTTTTAATCATATGGG
TCATTGGGGGACCTTGTTCTTTCATCCTTTGCTTTATTAATAAAGGAACTTATGGGAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               616-1258, gnl|bosTau2|chr25 (11400146-11400771)
               

               
               616-1258, gnl|Hg17|chr16 (19039832-19040452)
               

               
               616-1258, gnl|Mm7|chr7 (114408280-114407684)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               616-1258, gnl|bosTau2|chr25 (11400146-11400771)
               

               
               616-1258, gnl|Hg17|chr16 (19039832-19040452)
               

               
               616-1258, gnl|Mm7|chr7 (114408280-114407684)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               elu (0.385356)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               cty (0.10408)

	616-1258, gnl\|bosTau2\|chr25 (11400146-11400771)
	616-1258, gnl\|Hg17\|chr16 (19039832-19040452)
	616-1258, gnl\|Mm7\|chr7 (114408280-114407684)

	elu (0.385356)
	jca (0.22792)
	nms (0.213858)
	sin (0.174948)
	mga (0.160205)
	cty (0.10408)