Non-Coding RNA Search

Ss1.1-Pig4-TMW8052L16.5

Sequence:


               
               TGTGTGTGAGTGTGAGAGAGAGAACTTGTGTGCCTGCAAGTACAGTGTGTCACTGAAATT
ACCTGGAGTGAGGATTACTGTAATTAAAATATTTATAAAAGAAACAACTTTATTCACAGA
GACCAGCTTTAGGACTAGTCTTTATCTTGTTTTATACAGTCTAACAACACTTATTATAGG
AAGTAAAAACAGAAAGGAAAACCCTTTGAGTTAGATTGCAAGTCCTGGGGACTCTGATAC
CAGGTCTCCAAAGTAATCCATCTCCCACCTGCCTTCCCATCAGTGTGTCCCCCAGTTGAG
AACATTTCTGTGTCTGTGTCACTTCCATTTCAGTTTCCCATCTGCTTAAGTCAGTTGCCA
CTCCCCTAAAACATCAGGGTCTCCATCCAAGATGCAGCTCTGGAGGCTGCAGAAGGGTTA
GTAGGACTTGGTAAAAAGAACCTCCATCCCAGCCCCCCTCTCCTTCCTCTCAAACAAGAC
CTGATCTGATTTCTCAGGGGCCTGGAGCTGGGACTCTCAAGTATGCTAAAATTCACATAC
TCGGTCCTCTTGGCTTTGGGGAGAAACTTCTTTGCCTTTCTTCAAATCTCCTCAGTGAAT
TTTTGCTTTTCTTATTCAAAACTAGGTTCAGTCCTGGAGGGTGGGAATGAGCAGGGCATT
TATCTCTGTGTAGCAAGTGCTTCATGTGTGGAACATTTGTTTTCTTAATACAGTGGGGCT
GGGGTTGAAGCTACTACCCACCCCCCAACTCTGTTGGCTTAGCCCAGGCTGGTGATGGGG
TGGCCTACAGCCAGTGACGTTGTGCATGTAAAAGCATTGATGTGATTAGTAATTTGTTCC
TCCCTTGAACTGTCTCTTTAGTCTGAGGTTTTTAGACTTCCAGGCAACTGACTGACCGTG
ATGTCCAGTTATTCCTTGCTTGTTATGCATCATGTTGCAGAACAGCTGTTACCACCCACA
GATTCCTCCTCCATTCTAAGCGCATACTCTGCTTCTGTCAGCAGCCCATTCTGGGGAAAG
GAAGTCATATTCCTGCACTCCAGTTTTGAAGTTGCTCTCCCACTTATCCTCTTGGGTGGA
AGTGAGGAGTTTGAAAAAAAGAGTGTGTTCTCCTTGGTGATGGGGGCTGGTGCCAGAGGG
TAGGAGGGGCAGCAAGTCCACTATGTCTTGGTGGTACAAGACATACACACAGATTCTAGA
ACTCTCATCTTCTAAGCTAGCGACACATAGGTGCTATCAACAGGGAATTAAGCAAAATGC
TGGATGCTACAGACCTTTTAATTGTCTTAATTTTTTTCTATTATTAAACTACAAAGCTGT
AGGTTTCTTAGTTCTCAGAGAACTTCTCTCGTTTTTAAACCGACTTGTATATTAAAAAAA
AAAAATCTTAAGTAGGATGTTTTATACTTTTGCCAGACCCTCTTCTGTGATGGGTAATGC
GTTTGATTGTTTGAGATTTTGTTTTTAAAAATGTAGCACTTGACTTTTTGCCAAGTAAAA
AAATAAACAAATATTATTCCAGTGAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGTGTGAGTGTGAGAGAGAGAACTTGTGTGCCTGCAAGTACAGTGTGTCACTGAAATT
ACCTGGAGTGAGGATTACTGTAATTAAAATATTTATAAAAGAAACAACTTTATTCACAGA
GACCAGCTTTAGGACTAGTCTTTATCTTGTTTTATACAGTCTAACAACACTTATTATAGG
AAGTAAAAACAGAAAGGAAAACCCTTTGAGTTAGATTGCAAGTCCTGGGGACTCTGATAC
CAGGTCTCCAAAGTAATCCATCTCCCACCTGCCTTCCCATCAGTGTGTCCCCCAGTTGAG
AACATTTCTGTGTCTGTGTCACTTCCATTTCAGTTTCCCATCTGCTTAAGTCAGTTGCCA
CTCCCCTAAAACATCAGGGTCTCCATCCAAGATGCAGCTCTGGAGGCTGCAGAAGGGTTA
GTAGGACTTGGTAAAAAGAACCTCCATCCCAGCCCCCCTCTCCTTCCTCTCAAACAAGAC
CTGATCTGATTTCTCAGGGGCCTGGAGCTGGGACTCTCAAGTATGCTAAAATTCACATAC
TCGGTCCTCTTGGCTTTGGGGAGAAACTTCTTTGCCTTTCTTCAAATCTCCTCAGTGAAT
TTTTGCTTTTCTTATTCAAAACTAGGTTCAGTCCTGGAGGGTGGGAATGAGCAGGGCATT
TATCTCTGTGTAGCAAGTGCTTCATGTGTGGAACATTTGTTTTCTTAATACAGTGGGGCT
GGGGTTGAAGCTACTACCCACCCCCCAACTCTGTTGGCTTAGCCCAGGCTGGTGATGGGG
TGGCCTACAGCCAGTGACGTTGTGCATGTAAAAGCATTGATGTGATTAGTAATTTGTTCC
TCCCTTGAACTGTCTCTTTAGTCTGAGGTTTTTAGACTTCCAGGCAACTGACTGACCGTG
ATGTCCAGTTATTCCTTGCTTGTTATGCATCATGTTGCAGAACAGCTGTTACCACCCACA
GATTCCTCCTCCATTCTAAGCGCATACTCTGCTTCTGTCAGCAGCCCATTCTGGGGAAAG
GAAGTCATATTCCTGCACTCCAGTTTTGAAGTTGCTCTCCCACTTATCCTCTTGGGTGGA
AGTGAGGAGTTTGAAAAAAAGAGTGTGTTCTCCTTGGTGATGGGGGCTGGTGCCAGAGGG
TAGGAGGGGCAGCAAGTCCACTATGTCTTGGTGGTACAAGACATACACACAGATTCTAGA
ACTCTCATCTTCTAAGCTAGCGACACATAGGTGCTATCAACAGGGAATTAAGCAAAATGC
TGGATGCTACAGACCTTTTAATTGTCTTAATTTTTTTCTATTATTAAACTACAAAGCTGT
AGGTTTCTTAGTTCTCAGAGAACTTCTCTCGTTTTTAAACCGACTTGTATATTAAAAAAA
AAAAATCTTAAGTAGGATGTTTTATACTTTTGCCAGACCCTCTTCTGTGATGGGTAATGC
GTTTGATTGTTTGAGATTTTGTTTTTAAAAATGTAGCACTTGACTTTTTGCCAAGTAAAA
AAATAAACAAATATTATTCCAGTGAAAAAAAAAAAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               4-719, gnl|bosTau2|chr8 (39958970-39958234)
               

               
               4-719, gnl|Hg17|chr9 (34077904-34077180)
               


               
               1090-1535, gnl|bosTau2|chr22 (13961682-13962098)
               

               
               1090-1535, gnl|Hg17|chr9 (34076797-34076382)
               

               
               1090-1535, gnl|Mm7|chr4 (41430145-41429763)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-719, gnl|bosTau2|chr8 (39958970-39958234)
               

               
               4-719, gnl|Hg17|chr9 (34077904-34077180)
               


               
               1090-1535, gnl|bosTau2|chr22 (13961682-13962098)
               

               
               1090-1535, gnl|Hg17|chr9 (34076797-34076382)
               

               
               1090-1535, gnl|Mm7|chr4 (41430145-41429763)

Expressed library(ies): 28 entry(ies)

More info

Expressed library(ies): 28 entry(ies)

Help | Less info


               
               tes (0.623441)
               

               
               sto (0.359648)
               

               
               spc (0.340097)
               

               
               cut (0.339847)
               

               
               vin (0.332557)
               

               
               ski (0.29347)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

Expressed library(ies): 28 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.623441)
               

               
               sto (0.359648)
               

               
               spc (0.340097)
               

               
               cut (0.339847)
               

               
               vin (0.332557)
               

               
               ski (0.29347)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

	4-719, gnl\|bosTau2\|chr8 (39958970-39958234)
	4-719, gnl\|Hg17\|chr9 (34077904-34077180)

	1090-1535, gnl\|bosTau2\|chr22 (13961682-13962098)
	1090-1535, gnl\|Hg17\|chr9 (34076797-34076382)
	1090-1535, gnl\|Mm7\|chr4 (41430145-41429763)

	tes (0.623441)
	sto (0.359648)
	spc (0.340097)
	cut (0.339847)
	vin (0.332557)
	ski (0.29347)
	ece (0.229305)
	aor (0.195274)
	col (0.195008)
	cmu (0.186393)
	sag (0.182715)
	rec (0.17307)
	duo (0.172801)
	fhi (0.169578)
	cje (0.165235)
	nco (0.161734)
	cag (0.151194)
	lin (0.145603)
	spl (0.143184)
	csk (0.140746)
	pla (0.133672)
	sug (0.127291)
	thg (0.126791)
	ese (0.126502)
	tra (0.123092)
	med (0.116252)
	cbl (0.114797)
	cty (0.10408)