Ss1.1-Pig4-TMW8052L23.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGAGAAGTCAGTACAGCTCGTCATGGAGTACGTGCCCCTGGGCAGCCTCCGAGACTAC TTGCCTCGGCAAAATGTCGGGCTGGCCCAGCTGCTGCTCTTCGCCCAGCAGATCTGCGAG GGTATGGCGTACCTGCACGCGCAGCACTATGTGCACCGAGACCTGGCCGCCCGCAACGTG CTGCTGGACAACAACAGGCTGGTCAAGATCGGGGACTTCGGCCTAGCCAAGGCCGTGCCC GAAGGCCACGACTACTACTGCGTGCGCGAGGATGGGGACAGCCCTGTGTTCTGGTATGCC CCAGAGTGCCTGAAGGAGTGTAAGTTCTACTATGCCTCTGACGTCTGGTCCTTTGGGGTC ACCATGTATGAGCTGCTGACCTACTGTGACTCCAGCCAGAGCCCCCCCTCGAAATTCATC GAGCTCATAGGCCTCACCCAGGGGCAGATGACAGTGCTGAGGCTCACTGAGCTGCTGGAA CAAGGGGAGAGGCTGCCACAGCCAGAGAAATGTCCCCATGAGATCTATCGCCTCATGAAG AACTGCTGGGAGGCAAAGGCCTCCTTCCGCCCCACCTTCCAGAACCTCGTACCTATCCTG AAAACCATCCAGGAGAAATACCAAGGCCAGGCCCCCTCAGTGTTCAGTGTCTGCTGAAGC CTGCCTGCAACTGTGCTTCGGGGGACTGGAGCTGACAGTACCCACAGAGAGTGTCCTCCC TCCTGCTCCCCACCCTCAGAGGAGCCCACAAAGGGGAGGTCAGCCTCACCGACTCCCTGT GCCTTACCCCTGTCTGGGGACCCCACTCCTGAGAGCCAACTTTCCTTGTCTTAGTCTGTT TGGGCTGCTGGAGCAAAAAGCAGCCACAGACTGGGTGGCTTAAAAACAACAGGCACTTAT TTCTCACAGTTCTAGAGGCGAGGAAGTCCAAGATCAAGGCACCAGTGTGGTCAGATCTTG GCAGCAGTCCTCTCCCCGGTTCATAGCCTGTGCCTTCTTGCTGTGTCCCCACAAGGTAGA AGGGTGCAGGGAACTTTCCTTTGCCTCTTTTAGAAAGGCACTAATTGCATTCTGGAGGGC TCCCCCCTCATGACCCACGTACCTCCTAATACCATCACAGTGGGCATTAGGATTTTAACA TATGAATTTGGGGGGACATAGTCATTCCAATCACAGCACCTTCCAAGGTCATGAGCCTGA CACAGGCTCATGAGGGACCCAGGACAAGCAAGGAGCTATCCCGGCCCTTGAATCTGATCT TTTTGCCTTCCTCCACCTTCCACCCTAGGAGGAAGTAGAAGATACTTCCACCCTCAGTAA GTGGCCCTTCTTCAGCAAGTGTCTGCTCTCCTGGGGACTGCAGCTAGGGCAAGATACTCA TTGCAGAAGAAGCCAGAATTAACTATGTAACCTTCACTCACCTCTAGCCAGCACTTAGAC CAGGGCCTGGAACACAAAAGGCCATCAATGTGTATGGTAAATATATCTGAAGGATTTGAG GGGGCCCTGTGCCATGTAGATAAGATTGCCAGATTCACTTTTCCCGCTGTGTGACCTCAG GCAAGTGGCTTCCCCAATCTGGACCTCAGCTCCCAACTCTGAACTGAGGCTGGTTATGCT TGCTACCTGTAGGACTAAGGTAAAGAGCTAATGAGGTTGTATCTGTCAAGTGCTTAGCAG AGAGCCATATAAACAAGTGCTTAATAATACTTTTTAAAATTTTTATAATGTCTTAAAATT TCTATGATATTTTATACTATTATAAAATTTATCAAATTTTATATTTGATTTACAATGTTG TATCAATTTCTGCTATACAGCAAAGTGACCCCATCATGCATGTATATACATACATTCTTT TTCTCATATTAATCTTCTGTCATGTTCTATTGGGTATAGTTCCCTGTGCTACACAGCAGG ACCTCATTGCTTATTCCTTCTAAATGTAAGATAAGACAAAAAAAGACAAAAAATAAATAA AATAAATGTAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGAGAAGTCAGTACAGCTCGTCATGGAGTACGTGCCCCTGGGCAGCCTCCGAGACTAC TTGCCTCGGCAAAATGTCGGGCTGGCCCAGCTGCTGCTCTTCGCCCAGCAGATCTGCGAG GGTATGGCGTACCTGCACGCGCAGCACTATGTGCACCGAGACCTGGCCGCCCGCAACGTG CTGCTGGACAACAACAGGCTGGTCAAGATCGGGGACTTCGGCCTAGCCAAGGCCGTGCCC GAAGGCCACGACTACTACTGCGTGCGCGAGGATGGGGACAGCCCTGTGTTCTGGTATGCC CCAGAGTGCCTGAAGGAGTGTAAGTTCTACTATGCCTCTGACGTCTGGTCCTTTGGGGTC ACCATGTATGAGCTGCTGACCTACTGTGACTCCAGCCAGAGCCCCCCCTCGAAATTCATC GAGCTCATAGGCCTCACCCAGGGGCAGATGACAGTGCTGAGGCTCACTGAGCTGCTGGAA CAAGGGGAGAGGCTGCCACAGCCAGAGAAATGTCCCCATGAGATCTATCGCCTCATGAAG AACTGCTGGGAGGCAAAGGCCTCCTTCCGCCCCACCTTCCAGAACCTCGTACCTATCCTG AAAACCATCCAGGAGAAATACCAAGGCCAGGCCCCCTCAGTGTTCAGTGTCTGCTGAAGC CTGCCTGCAACTGTGCTTCGGGGGACTGGAGCTGACAGTACCCACAGAGAGTGTCCTCCC TCCTGCTCCCCACCCTCAGAGGAGCCCACAAAGGGGAGGTCAGCCTCACCGACTCCCTGT GCCTTACCCCTGTCTGGGGACCCCACTCCTGAGAGCCAACTTTCCTTGTCTTAGTCTGTT TGGGCTGCTGGAGCAAAAAGCAGCCACAGACTGGGTGGCTTAAAAACAACAGGCACTTAT TTCTCACAGTTCTAGAGGCGAGGAAGTCCAAGATCAAGGCACCAGTGTGGTCAGATCTTG GCAGCAGTCCTCTCCCCGGTTCATAGCCTGTGCCTTCTTGCTGTGTCCCCACAAGGTAGA AGGGTGCAGGGAACTTTCCTTTGCCTCTTTTAGAAAGGCACTAATTGCATTCTGGAGGGC TCCCCCCTCATGACCCACGTACCTCCTAATACCATCACAGTGGGCATTAGGATTTTAACA TATGAATTTGGGGGGACATAGTCATTCCAATCACAGCACCTTCCAAGGTCATGAGCCTGA CACAGGCTCATGAGGGACCCAGGACAAGCAAGGAGCTATCCCGGCCCTTGAATCTGATCT TTTTGCCTTCCTCCACCTTCCACCCTAGGAGGAAGTAGAAGATACTTCCACCCTCAGTAA GTGGCCCTTCTTCAGCAAGTGTCTGCTCTCCTGGGGACTGCAGCTAGGGCAAGATACTCA TTGCAGAAGAAGCCAGAATTAACTATGTAACCTTCACTCACCTCTAGCCAGCACTTAGAC CAGGGCCTGGAACACAAAAGGCCATCAATGTGTATGGTAAATATATCTGAAGGATTTGAG GGGGCCCTGTGCCATGTAGATAAGATTGCCAGATTCACTTTTCCCGCTGTGTGACCTCAG GCAAGTGGCTTCCCCAATCTGGACCTCAGCTCCCAACTCTGAACTGAGGCTGGTTATGCT TGCTACCTGTAGGACTAAGGTAAAGAGCTAATGAGGTTGTATCTGTCAAGTGCTTAGCAG AGAGCCATATAAACAAGTGCTTAATAATACTTTTTAAAATTTTTATAATGTCTTAAAATT TCTATGATATTTTATACTATTATAAAATTTATCAAATTTTATATTTGATTTACAATGTTG TATCAATTTCTGCTATACAGCAAAGTGACCCCATCATGCATGTATATACATACATTCTTT TTCTCATATTAATCTTCTGTCATGTTCTATTGGGTATAGTTCCCTGTGCTACACAGCAGG ACCTCATTGCTTATTCCTTCTAAATGTAAGATAAGACAAAAAAAGACAAAAAATAAATAA AATAAATGTAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 119-236, - strand, RNAz p=0.649839 | |
| 967-1930, - strand, RNAz p=0.999909 | |
| 1509-1628, - strand, RNAz p=0.518194 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 119-236, - strand, RNAz p=0.649839 | |
| 967-1930, - strand, RNAz p=0.999909 | |
| 1509-1628, - strand, RNAz p=0.518194 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 119-296, gnl|bosTau2|chr7 (9466382-9466559) | |
| 119-296, gnl|canFam2|chr20 (53769833-53769692) | |
| 119-296, gnl|danRer3|chr3 (41629439-41629303) | |
| 119-296, gnl|dasNov1|scaffold_219830 (3631-3491) | |
| 119-296, gnl|echTel1|scaffold_324241 (40729-40870) | |
| 119-296, gnl|fr1|chrUn (257621305-257621169) | |
| 119-296, gnl|galGal2|chr8 (28424793-28424941) | |
| 119-296, gnl|hg17|chr19 (10324587-10324735) | |
| 119-296, gnl|Hg17|chr19 (10324776-10324599) | |
| 119-296, gnl|loxAfr1|scaffold_20657 (10760-10901) | |
| 119-296, gnl|mm7|chr9 (20984415-20984556) | |
| 119-296, gnl|Mm7|chr9 (20984597-20984420) | |
| 119-296, gnl|monDom2|scaffold_106 (2042661-2042802) | |
| 119-296, gnl|oryCun1|scaffold_206796 (115590-115731) | |
| 119-296, gnl|panTro1|chr20 (10713128-10713269) | |
| 119-296, gnl|rheMac2|chr1 (67610607-67610744) | |
| 119-296, gnl|rn3|chr8 (20132164-20132305) | |
| 119-296, gnl|tetNig1|chr3 (11626081-11625947) | |
| 119-296, gnl|xenTro1|scaffold_571 (153894-154030) | |
| 411-522, gnl|bosTau2|chr7 (9468413-9468524) | |
| 411-522, gnl|canFam2|chr20 (53771555-53771419) | |
| 411-522, gnl|danRer3|chr3 (41635722-41635596) | |
| 411-522, gnl|dasNov1|scaffold_247641 (590-719) | |
| 411-522, gnl|echTel1|scaffold_156325 (731-594) | |
| 411-522, gnl|fr1|chrUn (257621707-257621619) | |
| 411-522, gnl|galGal2|chr8 (28423803-28423928) | |
| 411-522, gnl|hg17|chr19 (10322716-10322853) | |
| 411-522, gnl|Hg17|chr19 (10322839-10322728) | |
| 411-522, gnl|mm7|chr9 (20981810-20981947) | |
| 411-522, gnl|Mm7|chr9 (20981933-20981822) | |
| 411-522, gnl|monDom2|scaffold_106 (2042106-2042226) | |
| 411-522, gnl|oryCun1|scaffold_181567 (771-909) | |
| 411-522, gnl|panTro1|chr20 (10711252-10711389) | |
| 411-522, gnl|rheMac2|chr19 (10169484-10169621) | |
| 411-522, gnl|rn3|chr8 (20129076-20129208) | |
| 411-522, gnl|tetNig1|chr1 (15750989-15750864) | |
| 411-522, gnl|xenTro1|scaffold_571 (151881-151998) | |
| 799-1178, gnl|bosTau2|chr16 (7558018-7557643) | |
| 808-1167, gnl|bosTau2|chr10 (60910964-60911300) | |
| 1323-1628, gnl|bosTau2|chr7 (9469907-9470220) | |
| 1738-1968, gnl|bosTau2|chr23 (24718567-24718802) | |
| 1750-1954, gnl|bosTau2|chr10 (25822063-25822256) | |
| 1755-1949, gnl|bosTau2|chr10 (61509754-61509952) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 119-296, gnl|bosTau2|chr7 (9466382-9466559) | |
| 119-296, gnl|canFam2|chr20 (53769833-53769692) | |
| 119-296, gnl|danRer3|chr3 (41629439-41629303) | |
| 119-296, gnl|dasNov1|scaffold_219830 (3631-3491) | |
| 119-296, gnl|echTel1|scaffold_324241 (40729-40870) | |
| 119-296, gnl|fr1|chrUn (257621305-257621169) | |
| 119-296, gnl|galGal2|chr8 (28424793-28424941) | |
| 119-296, gnl|hg17|chr19 (10324587-10324735) | |
| 119-296, gnl|Hg17|chr19 (10324776-10324599) | |
| 119-296, gnl|loxAfr1|scaffold_20657 (10760-10901) | |
| 119-296, gnl|mm7|chr9 (20984415-20984556) | |
| 119-296, gnl|Mm7|chr9 (20984597-20984420) | |
| 119-296, gnl|monDom2|scaffold_106 (2042661-2042802) | |
| 119-296, gnl|oryCun1|scaffold_206796 (115590-115731) | |
| 119-296, gnl|panTro1|chr20 (10713128-10713269) | |
| 119-296, gnl|rheMac2|chr1 (67610607-67610744) | |
| 119-296, gnl|rn3|chr8 (20132164-20132305) | |
| 119-296, gnl|tetNig1|chr3 (11626081-11625947) | |
| 119-296, gnl|xenTro1|scaffold_571 (153894-154030) | |
| 411-522, gnl|bosTau2|chr7 (9468413-9468524) | |
| 411-522, gnl|canFam2|chr20 (53771555-53771419) | |
| 411-522, gnl|danRer3|chr3 (41635722-41635596) | |
| 411-522, gnl|dasNov1|scaffold_247641 (590-719) | |
| 411-522, gnl|echTel1|scaffold_156325 (731-594) | |
| 411-522, gnl|fr1|chrUn (257621707-257621619) | |
| 411-522, gnl|galGal2|chr8 (28423803-28423928) | |
| 411-522, gnl|hg17|chr19 (10322716-10322853) | |
| 411-522, gnl|Hg17|chr19 (10322839-10322728) | |
| 411-522, gnl|mm7|chr9 (20981810-20981947) | |
| 411-522, gnl|Mm7|chr9 (20981933-20981822) | |
| 411-522, gnl|monDom2|scaffold_106 (2042106-2042226) | |
| 411-522, gnl|oryCun1|scaffold_181567 (771-909) | |
| 411-522, gnl|panTro1|chr20 (10711252-10711389) | |
| 411-522, gnl|rheMac2|chr19 (10169484-10169621) | |
| 411-522, gnl|rn3|chr8 (20129076-20129208) | |
| 411-522, gnl|tetNig1|chr1 (15750989-15750864) | |
| 411-522, gnl|xenTro1|scaffold_571 (151881-151998) | |
| 799-1178, gnl|bosTau2|chr16 (7558018-7557643) | |
| 808-1167, gnl|bosTau2|chr10 (60910964-60911300) | |
| 1323-1628, gnl|bosTau2|chr7 (9469907-9470220) | |
| 1738-1968, gnl|bosTau2|chr23 (24718567-24718802) | |
| 1750-1954, gnl|bosTau2|chr10 (25822063-25822256) | |
| 1755-1949, gnl|bosTau2|chr10 (61509754-61509952) |
| Expressed library(ies): 40 entry(ies) | More info |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
| eye (0.511509) | |
| cut (0.509771) | |
| jca (0.45584) | |
| spl (0.429553) | |
| aor (0.390549) | |
| bla (0.373042) | |
| tra (0.369276) | |
| sto (0.359648) | |
| cbl (0.344392) | |
| fco (0.314416) | |
| sme (0.305437) | |
| liv (0.292569) | |
| lin (0.291206) | |
| lyg (0.266205) | |
| nmm (0.265604) | |
| ret (0.257467) | |
| cbe (0.239234) | |
| col (0.195008) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| ill (0.175593) | |
| sin (0.174948) | |
| rec (0.17307) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| ski (0.146735) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| pla (0.133672) | |
| kid (0.129735) | |
| cly (0.120642) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| cty (0.10408) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eye (0.511509) | |
| cut (0.509771) | |
| jca (0.45584) | |
| spl (0.429553) | |
| aor (0.390549) | |
| bla (0.373042) | |
| tra (0.369276) | |
| sto (0.359648) | |
| cbl (0.344392) | |
| fco (0.314416) | |
| sme (0.305437) | |
| liv (0.292569) | |
| lin (0.291206) | |
| lyg (0.266205) | |
| nmm (0.265604) | |
| ret (0.257467) | |
| cbe (0.239234) | |
| col (0.195008) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| ill (0.175593) | |
| sin (0.174948) | |
| rec (0.17307) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| ski (0.146735) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| pla (0.133672) | |
| kid (0.129735) | |
| cly (0.120642) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| cty (0.10408) | |
| eje (0.0988338) | |
| ldo (0.0970026) |