Non-Coding RNA Search

Ss1.1-Pig4-TMW8052M05.3

Sequence:


               
               GAAGTTTAGGCTGGTTCTTTTTGATCTGAGGCTGATGTGTGTTCACAGGTGTTTTGAGGG
GCTAGAAGGAAGGTGGGAGAGGAGGAGGAAGCAAGGAAGAAAATGTCAAAGGAAGAACCA
AATGGTTTCTGGTAGAGAGGATTTTTTTTTTTAAGTGTAGACAGTTATCTGAAATAAACG
GAGATGAAATTAACTAAAGGATTTAATCTGGGATTAAAAATCTGAAACCGTCTGCTGCTT
ATACAAGTGCACCACATCAACCCACTAATGGCCCAGCATTATTCACAGATAGACTTTGGT
TTCAGTGATTTCAAAATGCCGCATCTATTCCTCTCCAGACTAGAATAATTGGCCCATCTT
AATGCACAGGCTGGGGGATTCATTTTCCCAGGCTCTCTTCTCCATCACTGCCTTGGTAGC
TAGGAGCTTATTGCTTCACCCCAGCAAGGAGTTCAGAATACAGTGTTTTCCATTACATTT
AGATTCATAGAATCTGAATGGCTGATTAAATGGCCATCTGATGGCCTGAAAGAGGGGAGG
GGGTATTTTTCACCCTGTATTGAAAGGCTTAGAGGAGTTTCTAGTTTTTATTTTAATTAT
ACTTTAACCAAAGAATTATTTTAAAGTAACCTTATATTTGAAAGACGATTTTGCAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGTTTAGGCTGGTTCTTTTTGATCTGAGGCTGATGTGTGTTCACAGGTGTTTTGAGGG
GCTAGAAGGAAGGTGGGAGAGGAGGAGGAAGCAAGGAAGAAAATGTCAAAGGAAGAACCA
AATGGTTTCTGGTAGAGAGGATTTTTTTTTTTAAGTGTAGACAGTTATCTGAAATAAACG
GAGATGAAATTAACTAAAGGATTTAATCTGGGATTAAAAATCTGAAACCGTCTGCTGCTT
ATACAAGTGCACCACATCAACCCACTAATGGCCCAGCATTATTCACAGATAGACTTTGGT
TTCAGTGATTTCAAAATGCCGCATCTATTCCTCTCCAGACTAGAATAATTGGCCCATCTT
AATGCACAGGCTGGGGGATTCATTTTCCCAGGCTCTCTTCTCCATCACTGCCTTGGTAGC
TAGGAGCTTATTGCTTCACCCCAGCAAGGAGTTCAGAATACAGTGTTTTCCATTACATTT
AGATTCATAGAATCTGAATGGCTGATTAAATGGCCATCTGATGGCCTGAAAGAGGGGAGG
GGGTATTTTTCACCCTGTATTGAAAGGCTTAGAGGAGTTTCTAGTTTTTATTTTAATTAT
ACTTTAACCAAAGAATTATTTTAAAGTAACCTTATATTTGAAAGACGATTTTGCAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               389-548, - strand, RNAz p=0.92155

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               389-548, - strand, RNAz p=0.92155

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               2-660, gnl|bosTau2|chr2 (12996523-12997163)
               

               
               2-660, gnl|Hg17|chr11 (122188379-122189021)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-660, gnl|bosTau2|chr2 (12996523-12997163)
               

               
               2-660, gnl|Hg17|chr11 (122188379-122189021)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               cmu (0.186393)
               

               
               sin (0.174948)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               sin (0.174948)

	2-660, gnl\|bosTau2\|chr2 (12996523-12997163)
	2-660, gnl\|Hg17\|chr11 (122188379-122189021)