Ss1.1-Pig4-TMW8052M14.3
|
ATTTCTGCCGCCTTTCCCTCCGCCGCCGCTGCCTCCCAACGTGCCGGCGCCACCCCTCCC
GCCGCCGCTCCCACCCTCGCCGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTTCTCTGGC
CCCTCTGCCACCTGTACCCGACCCAGGCCCTCTGTCCCTGAGAGGAGGCCGTGTTCGGTC
TCCTTCCTGGGCCAGGGGCACAGCCATGGCGGACGGTGGCGGCGGCAGCGGGGGCACCGG
TGCGGTGGGCGGCGGCGGCTCGGGCCAGGCCTCGGCGGGGGCGGCGACCGGCGCGACGGG
GGCTGGCGGAAGCGGCGGCCCCATCAACCCGGCTTCGCTGCCTCCCGGCGACCCGCAGCT
CATCGCTCTCATCGTGGAGCAGCTCAAGAGCCGGGGCTTGTTTGACAGTTTCCGCCGGGA
CTGCCTGGCCGACGTGGACACCAAGCCAGCTTACCAAAACCTGAGGCAGAAAGTGGATAA
TTTTGTGTCAACACACCTGGACAAGCAGGAATGGAATCCTACGATGAACAAAAACCAGTT
GCGAAATGGTCTGCGGCAGAGTGTGGTTCAGTCAGGGATGTTGGAAGCTGGAGTGGACAG
AATTATTTCCCAGGTGGTGGATCCCAAACTAAACCACATCTTCAGGCCACAGATAGAACG
AGCAATTCATGAGTTCCTGGCAGCCCAGAAAAAAGAAGCTGTGCCAGCACCCCCTCCAGA
GCCTGAAAGCCAGGACCCTCCAGCTCCATCCCAGGATGCCTCCTAAGAATATGCCTCACA
CATTTTGGAAGCTCCACTAAATTAGTGGTGAAGACCTGGATTCAGTGACATAAGAGTACG
ACTTTAGAATGAAGACAGGCCAAGGTCATCACTGACGTCAAGATCCAACCTGGATTGTGG
GGCAGTGCCCAGACAGAATAGGGAACGAGTGTAGCAAGGAAAGTTGACACGTGTGCCCCC
ACAGTGTGCTGCCATCTGGCCAGTTTGTCTAAGCTGATGACACCCAGTAGACACTACAGA
TATATTAAGAAACACTACATCAACCTGGGGTTGTCCTGAAACAAACCTTTATACTTGAAC
TTGGAGACTGCGTGCAGATTTTAGGGTTTGTGCCTGGGGATAAGCAAACGTTACCAATGA
AGGAACGGATCTAGTCCCAAGATGCAATTTCAAAGAATGACAGTAACGGTTAGTCAGGAG
TGGGCATTTGACAGTGCTTATTTGATACTGTTTCTCAGAGTTGCAAGTTAGAGTGTATAA
GCCTTTAGCATCAAGGAGCTTTGAGACTGCTGCGACCCTCTGGTACGTGACTCTTGTAGC
TTCAGTTCCCTTTCCCCGGTAAGCGGTGTCAAAACGCGGACCCTAGAAATCATGGAGAAA
TGCAGGCTTAGGTGGAAGGAAAAACTTCTGCAGGTGCTCTGTGCAAGGCTTGCTTCTTCC
TATCCTGCAAAGGCTAGTGAGTCCTAAGTGTGTGTATTTGATTCTCATGTATGTGTTTTT
TAGAAGGTGAATAATCAATAAGTGGCTTAAGTTTTGTAATAAAACCATTTGATACTCTTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATTTCTGCCGCCTTTCCCTCCGCCGCCGCTGCCTCCCAACGTGCCGGCGCCACCCCTCCC
GCCGCCGCTCCCACCCTCGCCGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTTCTCTGGC
CCCTCTGCCACCTGTACCCGACCCAGGCCCTCTGTCCCTGAGAGGAGGCCGTGTTCGGTC
TCCTTCCTGGGCCAGGGGCACAGCCATGGCGGACGGTGGCGGCGGCAGCGGGGGCACCGG
TGCGGTGGGCGGCGGCGGCTCGGGCCAGGCCTCGGCGGGGGCGGCGACCGGCGCGACGGG
GGCTGGCGGAAGCGGCGGCCCCATCAACCCGGCTTCGCTGCCTCCCGGCGACCCGCAGCT
CATCGCTCTCATCGTGGAGCAGCTCAAGAGCCGGGGCTTGTTTGACAGTTTCCGCCGGGA
CTGCCTGGCCGACGTGGACACCAAGCCAGCTTACCAAAACCTGAGGCAGAAAGTGGATAA
TTTTGTGTCAACACACCTGGACAAGCAGGAATGGAATCCTACGATGAACAAAAACCAGTT
GCGAAATGGTCTGCGGCAGAGTGTGGTTCAGTCAGGGATGTTGGAAGCTGGAGTGGACAG
AATTATTTCCCAGGTGGTGGATCCCAAACTAAACCACATCTTCAGGCCACAGATAGAACG
AGCAATTCATGAGTTCCTGGCAGCCCAGAAAAAAGAAGCTGTGCCAGCACCCCCTCCAGA
GCCTGAAAGCCAGGACCCTCCAGCTCCATCCCAGGATGCCTCCTAAGAATATGCCTCACA
CATTTTGGAAGCTCCACTAAATTAGTGGTGAAGACCTGGATTCAGTGACATAAGAGTACG
ACTTTAGAATGAAGACAGGCCAAGGTCATCACTGACGTCAAGATCCAACCTGGATTGTGG
GGCAGTGCCCAGACAGAATAGGGAACGAGTGTAGCAAGGAAAGTTGACACGTGTGCCCCC
ACAGTGTGCTGCCATCTGGCCAGTTTGTCTAAGCTGATGACACCCAGTAGACACTACAGA
TATATTAAGAAACACTACATCAACCTGGGGTTGTCCTGAAACAAACCTTTATACTTGAAC
TTGGAGACTGCGTGCAGATTTTAGGGTTTGTGCCTGGGGATAAGCAAACGTTACCAATGA
AGGAACGGATCTAGTCCCAAGATGCAATTTCAAAGAATGACAGTAACGGTTAGTCAGGAG
TGGGCATTTGACAGTGCTTATTTGATACTGTTTCTCAGAGTTGCAAGTTAGAGTGTATAA
GCCTTTAGCATCAAGGAGCTTTGAGACTGCTGCGACCCTCTGGTACGTGACTCTTGTAGC
TTCAGTTCCCTTTCCCCGGTAAGCGGTGTCAAAACGCGGACCCTAGAAATCATGGAGAAA
TGCAGGCTTAGGTGGAAGGAAAAACTTCTGCAGGTGCTCTGTGCAAGGCTTGCTTCTTCC
TATCCTGCAAAGGCTAGTGAGTCCTAAGTGTGTGTATTTGATTCTCATGTATGTGTTTTT
TAGAAGGTGAATAATCAATAAGTGGCTTAAGTTTTGTAATAAAACCATTTGATACTCTTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
122-1076, gnl|bosTau2|chr17 (21857394-21856445) |
|
122-1076, gnl|Hg17|chr18 (52965459-52966370) |
|
122-1076, gnl|Mm7|chr16 (17283807-17284705) |
| |
|
1121-1582, gnl|bosTau2|chr17 (21856433-21855991) |
|
1121-1582, gnl|canFam2|chr3 (40272717-40272281) |
|
1121-1582, gnl|dasNov1|scaffold_46136 (447-6) |
|
1121-1582, gnl|echTel1|scaffold_291236 (80553-80893) |
|
1121-1582, gnl|hg17|chr12 (47209031-47209485) |
|
1121-1582, gnl|Hg17|chr18 (52966415-52966824) |
|
1121-1582, gnl|loxAfr1|scaffold_36951 (21491-21056) |
|
1121-1582, gnl|mm7|chr16 (17284668-17285038) |
|
1121-1582, gnl|Mm7|chr16 (17284720-17285149) |
|
1121-1582, gnl|oryCun1|scaffold_172524 (4684-5112) |
|
1121-1582, gnl|panTro1|chr10 (48259170-48259624) |
|
1121-1582, gnl|rheMac2|chr11 (45634917-45635375) |
|
1121-1582, gnl|rn3|chr10 (16262343-16262738) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
122-1076, gnl|bosTau2|chr17 (21857394-21856445) |
|
122-1076, gnl|Hg17|chr18 (52965459-52966370) |
|
122-1076, gnl|Mm7|chr16 (17283807-17284705) |
| |
|
1121-1582, gnl|bosTau2|chr17 (21856433-21855991) |
|
1121-1582, gnl|canFam2|chr3 (40272717-40272281) |
|
1121-1582, gnl|dasNov1|scaffold_46136 (447-6) |
|
1121-1582, gnl|echTel1|scaffold_291236 (80553-80893) |
|
1121-1582, gnl|hg17|chr12 (47209031-47209485) |
|
1121-1582, gnl|Hg17|chr18 (52966415-52966824) |
|
1121-1582, gnl|loxAfr1|scaffold_36951 (21491-21056) |
|
1121-1582, gnl|mm7|chr16 (17284668-17285038) |
|
1121-1582, gnl|Mm7|chr16 (17284720-17285149) |
|
1121-1582, gnl|oryCun1|scaffold_172524 (4684-5112) |
|
1121-1582, gnl|panTro1|chr10 (48259170-48259624) |
|
1121-1582, gnl|rheMac2|chr11 (45634917-45635375) |
|
1121-1582, gnl|rn3|chr10 (16262343-16262738) |
|
vin (1.33023) |
|
gul (0.710353) |
|
ssp (0.677599) |
|
ova (0.645661) |
|
tbr (0.616713) |
|
che (0.545256) |
|
ste (0.540833) |
|
pro (0.512033) |
|
sug (0.509165) |
|
ldo (0.38801) |
|
nep (0.36785) |
|
eye (0.341006) |
|
sme (0.305437) |
|
isp (0.300752) |
|
liv (0.292569) |
|
thg (0.253582) |
|
jca (0.22792) |
|
fli (0.202881) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
col (0.195008) |
|
fty (0.17584) |
|
duo (0.172801) |
|
nje (0.16592) |
|
bfe (0.149858) |
|
hyp (0.142837) |
|
csk (0.140746) |
|
lyg (0.133103) |
|
ute (0.132784) |
|
ese (0.126502) |
|
pgl (0.118483) |
|
spc (0.113366) |
|
cty (0.10408) |
|
vin (1.33023) |
|
gul (0.710353) |
|
ssp (0.677599) |
|
ova (0.645661) |
|
tbr (0.616713) |
|
che (0.545256) |
|
ste (0.540833) |
|
pro (0.512033) |
|
sug (0.509165) |
|
ldo (0.38801) |
|
nep (0.36785) |
|
eye (0.341006) |
|
sme (0.305437) |
|
isp (0.300752) |
|
liv (0.292569) |
|
thg (0.253582) |
|
jca (0.22792) |
|
fli (0.202881) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
col (0.195008) |
|
fty (0.17584) |
|
duo (0.172801) |
|
nje (0.16592) |
|
bfe (0.149858) |
|
hyp (0.142837) |
|
csk (0.140746) |
|
lyg (0.133103) |
|
ute (0.132784) |
|
ese (0.126502) |
|
pgl (0.118483) |
|
spc (0.113366) |
|
cty (0.10408) |
