Ss1.1-Pig4-TMW8052M16.5
|
AGTGCTGAGGCGACCGCCCATGCGCGGCTCACCATGGCGTCTCAGCTCCGGCTCCGCTCC
GCTCTGGCCCTGGTCACAGGTTGGGGGGAGTCCGCTTCCCGGGCGGGGTAGGGTGCCAGA
GTGATATCGGGGTTGCGCCCTCGGACGCTAGAGTCACTGTGACCTCTGGCCTCTGGTCTA
AATTTTACTAACTTCGCGCCCTGTTGACCTCTGACCCCTGCCCATGCCTCCCTCCCTCCC
TCCTCGGGTGTTCTCTCCCACCTCAGGTGCAGGTAGCGGCATCGGCCGAGCGGTCAGTGT
GCGCTTAGCTGCTGAGGGTGCCGCCGTGGCCGCTTGCGACCTGGACGGGGCAGCGGCACA
GGAGACGGTGCAGCTGCTGGGAGGGCCGGGGAGTGAGAAGGGGGCACCCAGCGGGGCCCA
TGCTGCCTTCCAGGCTGACGTGTCCGAGGCAGAGACCGCCAGGCGCCTGCTGGAGCAAGT
GCAGGCCTACTTTTTTCGCCCGCCATCTGTCGTTGTGTCTTGTGCGGGCATCACCAGGGA
TGAATTTCTGCTCCGCATGTCTGAAGATGACTGGGACAAAGTCATAGCTGTCAACCTCAA
GGGCATCTTTCTAGTCACTCAGGCTGCAGCCCAAGCCCTGGTGTCCAGTGGCTGTCCTGG
CTCCATCATCAACATCAGTAGCATCATAGGGAAGGTGGGAAACATGGGACAGACAAACTA
CGCAGCATCCAAGGCTGGAGTGATTGGGCTGACCCAGGCTGTAGCCCGGGAGCTCGGACG
ATACAGGATCCGCTGTAACTCTGTCCTCCCAGGGTTCATTAAAACACCCATGGCACAGAA
AGTGCCACAGAAAGTGCTGGACAAGGTGGTTGGAATGATCCCGATGGGACATCTGGGGGA
CCCTGAGGATGTGGCCGATGTGGTCGCGTTCTTGGCATCTGAGGACAGTGGATACATCAC
AGGGGCATCAGTCGAAGTCACTGGAGGTCTTTTCATGTAACTGCCTCAAGGACCCTGGAC
TCTGCTCACTCCCCCACCATTCTGCCCGGCCTCCTGCTGATGAGGACTCTGAGTTCCCAG
GCTACAAAAGGGGTGGCAGTGTATGGCTCAAGAATGCTGAATATGGGAGGCAGGGGTGCT
TGTGACCCTAATAAATTCCAAATCCTCTTCCCTGCC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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AGTGCTGAGGCGACCGCCCATGCGCGGCTCACCATGGCGTCTCAGCTCCGGCTCCGCTCC
GCTCTGGCCCTGGTCACAGGTTGGGGGGAGTCCGCTTCCCGGGCGGGGTAGGGTGCCAGA
GTGATATCGGGGTTGCGCCCTCGGACGCTAGAGTCACTGTGACCTCTGGCCTCTGGTCTA
AATTTTACTAACTTCGCGCCCTGTTGACCTCTGACCCCTGCCCATGCCTCCCTCCCTCCC
TCCTCGGGTGTTCTCTCCCACCTCAGGTGCAGGTAGCGGCATCGGCCGAGCGGTCAGTGT
GCGCTTAGCTGCTGAGGGTGCCGCCGTGGCCGCTTGCGACCTGGACGGGGCAGCGGCACA
GGAGACGGTGCAGCTGCTGGGAGGGCCGGGGAGTGAGAAGGGGGCACCCAGCGGGGCCCA
TGCTGCCTTCCAGGCTGACGTGTCCGAGGCAGAGACCGCCAGGCGCCTGCTGGAGCAAGT
GCAGGCCTACTTTTTTCGCCCGCCATCTGTCGTTGTGTCTTGTGCGGGCATCACCAGGGA
TGAATTTCTGCTCCGCATGTCTGAAGATGACTGGGACAAAGTCATAGCTGTCAACCTCAA
GGGCATCTTTCTAGTCACTCAGGCTGCAGCCCAAGCCCTGGTGTCCAGTGGCTGTCCTGG
CTCCATCATCAACATCAGTAGCATCATAGGGAAGGTGGGAAACATGGGACAGACAAACTA
CGCAGCATCCAAGGCTGGAGTGATTGGGCTGACCCAGGCTGTAGCCCGGGAGCTCGGACG
ATACAGGATCCGCTGTAACTCTGTCCTCCCAGGGTTCATTAAAACACCCATGGCACAGAA
AGTGCCACAGAAAGTGCTGGACAAGGTGGTTGGAATGATCCCGATGGGACATCTGGGGGA
CCCTGAGGATGTGGCCGATGTGGTCGCGTTCTTGGCATCTGAGGACAGTGGATACATCAC
AGGGGCATCAGTCGAAGTCACTGGAGGTCTTTTCATGTAACTGCCTCAAGGACCCTGGAC
TCTGCTCACTCCCCCACCATTCTGCCCGGCCTCCTGCTGATGAGGACTCTGAGTTCCCAG
GCTACAAAAGGGGTGGCAGTGTATGGCTCAAGAATGCTGAATATGGGAGGCAGGGGTGCT
TGTGACCCTAATAAATTCCAAATCCTCTTCCCTGCC
|
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207-485, gnl|bosTau2|chr23 (5554017-5553743) |
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207-485, gnl|Hg17|chr6 (33280585-33280875) |
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207-485, gnl|Mm7|chr17 (32106343-32106059) |
| |
|
588-696, gnl|bosTau2|chr23 (5553418-5553310) |
|
588-696, gnl|canFam2|chr12 (5671883-5672007) |
|
588-696, gnl|danRer3|chr19 (1998021-1998142) |
|
588-696, gnl|fr1|chrUn (274427668-274427805) |
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588-696, gnl|hg17|chr6 (33281180-33281303) |
|
588-696, gnl|Hg17|chr6 (33281194-33281296) |
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588-696, gnl|mm7|chr17 (32105756-32105633) |
|
588-696, gnl|Mm7|chr17 (32105740-32105638) |
|
588-696, gnl|monDom2|scaffold_42 (15254958-15254829) |
|
588-696, gnl|panTro1|chr5 (33726098-33726221) |
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588-696, gnl|rheMac2|chr4 (32919829-32919952) |
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588-696, gnl|rn3|chr20 (4965811-4965934) |
|
588-696, gnl|tetNig1|chrUn_random (10553413-10553276) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
207-485, gnl|bosTau2|chr23 (5554017-5553743) |
|
207-485, gnl|Hg17|chr6 (33280585-33280875) |
|
207-485, gnl|Mm7|chr17 (32106343-32106059) |
| |
|
588-696, gnl|bosTau2|chr23 (5553418-5553310) |
|
588-696, gnl|canFam2|chr12 (5671883-5672007) |
|
588-696, gnl|danRer3|chr19 (1998021-1998142) |
|
588-696, gnl|fr1|chrUn (274427668-274427805) |
|
588-696, gnl|hg17|chr6 (33281180-33281303) |
|
588-696, gnl|Hg17|chr6 (33281194-33281296) |
|
588-696, gnl|mm7|chr17 (32105756-32105633) |
|
588-696, gnl|Mm7|chr17 (32105740-32105638) |
|
588-696, gnl|monDom2|scaffold_42 (15254958-15254829) |
|
588-696, gnl|panTro1|chr5 (33726098-33726221) |
|
588-696, gnl|rheMac2|chr4 (32919829-32919952) |
|
588-696, gnl|rn3|chr20 (4965811-4965934) |
|
588-696, gnl|tetNig1|chrUn_random (10553413-10553276) |
|
nco (0.323468) |
|
cga (0.279096) |
|
cov (0.264306) |
|
hea (0.204499) |
|
fli (0.202881) |
|
nje (0.16592) |
|
cki (0.165235) |
|
csp (0.161186) |
|
cli (0.152812) |
|
hlv (0.139256) |
|
ese (0.126502) |
|
eep (0.122564) |
|
cty (0.10408) |
|
nco (0.323468) |
|
cga (0.279096) |
|
cov (0.264306) |
|
hea (0.204499) |
|
fli (0.202881) |
|
nje (0.16592) |
|
cki (0.165235) |
|
csp (0.161186) |
|
cli (0.152812) |
|
hlv (0.139256) |
|
ese (0.126502) |
|
eep (0.122564) |
|
cty (0.10408) |
