Non-Coding RNA Search

Ss1.1-Pig4-TMW8052M17.5

Sequence:


               
               AGAGACACATCACAGCCGGCACACCATAGCCCCCCGAGTGTACTCTGGTTCTGTATGGGT
GACGTGGCTTAGGTGTGTGCACACGGGGATTTTTCAAAGGACACTACATGAGCAGCCCCA
CTTGCCTCTTGTGTAAGCGCCGTGGTGGCTCTTTGTAAGATTCAAGTGCCAGTCCAGGGA
GCACTATTTCTACTCCATGATGTGATTTGTGTAAATAGCTTTAATTTTGCCTGTGTGTCT
TAGGTGAAGTTTTGTTTATGTACCAACCAGGTAGACAGTGACCAAATGAGGCTGTAATTG
TGTTGTTTTCTGCTGTGATGTACTTGAAGAAGAATCTTGTGTCCTCCACTCCTCCAATCT
TCCATAGTTTTTAGTGTTTGTTTGGGGAGTCCTGGGGTTACTCTTTTACTCCTATTTTGC
CTCCATTTTCCTTGTTTCTTCTGGAAATCCAGAGAGGCCCAGAGTGGAGATCATTTGTAA
GGAATGTATTACTGTCTGGGTTTCCAAAAAAGATCCTACATTATAGCGAATGAAAGGAAT
CTTCCTGAAAACGGTTTTGGAACCATTTATGCTCTGTGATTGTGAAACCCTGACTTTTGT
AACCCAGAAATGAAAACTGTTTAGTAAAGGGGATCTATTTTGTGTGTTTTGAAACTTCGG
TGCAATGTTCCCTGGAAAAAGTTGAAGAAATGTATATGCTCAATGCCATTTTAAAATAAA
ATATTATATATATGTAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGACACATCACAGCCGGCACACCATAGCCCCCCGAGTGTACTCTGGTTCTGTATGGGT
GACGTGGCTTAGGTGTGTGCACACGGGGATTTTTCAAAGGACACTACATGAGCAGCCCCA
CTTGCCTCTTGTGTAAGCGCCGTGGTGGCTCTTTGTAAGATTCAAGTGCCAGTCCAGGGA
GCACTATTTCTACTCCATGATGTGATTTGTGTAAATAGCTTTAATTTTGCCTGTGTGTCT
TAGGTGAAGTTTTGTTTATGTACCAACCAGGTAGACAGTGACCAAATGAGGCTGTAATTG
TGTTGTTTTCTGCTGTGATGTACTTGAAGAAGAATCTTGTGTCCTCCACTCCTCCAATCT
TCCATAGTTTTTAGTGTTTGTTTGGGGAGTCCTGGGGTTACTCTTTTACTCCTATTTTGC
CTCCATTTTCCTTGTTTCTTCTGGAAATCCAGAGAGGCCCAGAGTGGAGATCATTTGTAA
GGAATGTATTACTGTCTGGGTTTCCAAAAAAGATCCTACATTATAGCGAATGAAAGGAAT
CTTCCTGAAAACGGTTTTGGAACCATTTATGCTCTGTGATTGTGAAACCCTGACTTTTGT
AACCCAGAAATGAAAACTGTTTAGTAAAGGGGATCTATTTTGTGTGTTTTGAAACTTCGG
TGCAATGTTCCCTGGAAAAAGTTGAAGAAATGTATATGCTCAATGCCATTTTAAAATAAA
ATATTATATATATGTAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               360-470, + strand, RNAz p=0.900988

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               360-470, + strand, RNAz p=0.900988

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               20-733, gnl|bosTau2|chr5 (32371797-32371089)
               

               
               20-733, gnl|Hg17|chr12 (61324765-61324055)
               

               
               20-733, gnl|Mm7|chr10 (122438275-122439006)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-733, gnl|bosTau2|chr5 (32371797-32371089)
               

               
               20-733, gnl|Hg17|chr12 (61324765-61324055)
               

               
               20-733, gnl|Mm7|chr10 (122438275-122439006)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               lin (0.291206)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.291206)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

	20-733, gnl\|bosTau2\|chr5 (32371797-32371089)
	20-733, gnl\|Hg17\|chr12 (61324765-61324055)
	20-733, gnl\|Mm7\|chr10 (122438275-122439006)

	lin (0.291206)
	sin (0.174948)
	mga (0.160205)
	ute (0.132784)
	sug (0.127291)
	bla (0.124347)
	ebs (0.118301)
	cbl (0.114797)
	jca (0.11396)