Ss1.1-Pig4-TMW8052M23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTCGGGGAGGGATGGCGCGCTGAGCCGTTAACGTCTGTCTGCCAGGCTGTCCGCCTCTG TACCTGTTACTGCTGCCACGTCCTCGTTTGACACTTCCCTGGAGACTCTTGATTTTGGAA GAAATACCTGGTAACCAACATGACTGAGTTCTGGCTTATATCAGCTCCTGGGGAGAAAAC CTGTCAGCAAACATGGGAGAAATTGCATGCGGCAACTACAAAGAACAATAATCTTGCTCT CACTTCAAAGTTCAACATTCCTGACTTAAAGGTTGGCACATTGGATGTCTTGGTTGGTTT GTCGGATGAACTGGCTAAACTGGATGCATTTGTAGAAGGGGTCGTTAAAAAAGTGGCTCA ATACATGGCTGACGTATTGGAGGATAGTAGGGATAAAGTTCAGGAGAATCTATTGGCCAA TGGAGTTGACTTGGTTACTTATATAACAAGGTTTCAGTGGGATATGGCTAAATATCCAAT CAAGCAGTCTCTGAAAAATATTTCTGAAATAATTGCCAAGGGAGTGACTCAGATTGACAA TGACCTGAAATCTCGAGCATCCGCATATAACAACCTGAAAGGGAATCTTCAGAATTTGGA ACGAAAGAATGCAGGAAGTTTGCTAACTAGAAGTCTAGCAGAAATTGTGAAGAAGGATGA CTTTGTTCTTGATTCAGAGTATCTCGTCACATTACTGGTCGTAGTTCCCAAGTTAAACCA CAACGACTGGATTAAGCAGTATGAAACACTAGCTGAAATGGTAGTTCCGAGGTCTAGCAA TGTTCTCTCAGAGGACCAAGACAGTTACCTATGTAATGTCACCCTGTTTAGGAAGGCAGT CGATGACTTCAGACACAAAGCCAGGGAAAACAAATTCATTGTTCGTGACTTCCAGTATAA TGAAGAGGAGATGAAGGCAGATAAAGAAGAAATGAACAGGCTTTCTACCGACAAGAAAAA GCAATTTGGACCACTTGTACGGTGGCTGAAAGTGAATTTCAGTGAGGCGTTTATTGCCTG GATTCATGTGAAAGCATTGAGGGTTTTTGTTGAGTCTGTTTTGAGGTATGGCTTACCAGT GAACTTCCAAGCAATGCTCCTTCAACCCAATAAGAAAACAATGAAGAAACTAAGAGAAGT ATTATATGAATTGTATAAACATCTAGACAGCAGTGCAGCAGCTATTATTGATGCTCCTGT GGATATTCCAGGCTTAAACCTGAGTCAGCAGGAATACTACCCCTATGTGTACTACAAGAT TGATTGCAACTTGCTGGAATTCAAGTAAAACGAGCCCCCCAGACAGCCCTGCCCTCGTGT CGGTGTCGGTGTTTGCTAACAGAATAGGTTGCCCTATGGCCGAGCCCTTAACTCTCTCTC CCCCTTGCTTGCTCTCACCTCCTTTTCTCAGCGCAGTCTCCCGTAGTGGTCCGTTTCTCA ACATTTTCAAAAGGAAACTGTATGTCTTATTTCTTCTTATTGATCAGGTCTGTAAATGTG TACTAAAAAAAAAAAAAATCAGAGTTTATTTATAAACAGAATAGTTTATTTAAAGAGAAG GTCTTTCCTCATCAATATAAAATTGTGGTATGCATTAATTCCATTTGTTACTGTTGTGAC AAAAGCCTTGTTTACAGGGGAATGGTGTAAACAGTTATACCATTTTGTTCACTGTGTTTA GTAGACATGACTGTTGAATAGTTATTAAATCGTGATATAAAGAAATGTGACAATATTCAG GTTATGTGCTTTCTTTCAAACTACAGTCTGTGAGCACTGTTGACACCCACAGGAGAGAAT AAAATTACCTGTGCAAAGGTGAAATGTGGTGTGTGTAACTTCGAAGGTGACCGTTCAGTT TGGGAACTTAATAAATGGCATCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTCGGGGAGGGATGGCGCGCTGAGCCGTTAACGTCTGTCTGCCAGGCTGTCCGCCTCTG TACCTGTTACTGCTGCCACGTCCTCGTTTGACACTTCCCTGGAGACTCTTGATTTTGGAA GAAATACCTGGTAACCAACATGACTGAGTTCTGGCTTATATCAGCTCCTGGGGAGAAAAC CTGTCAGCAAACATGGGAGAAATTGCATGCGGCAACTACAAAGAACAATAATCTTGCTCT CACTTCAAAGTTCAACATTCCTGACTTAAAGGTTGGCACATTGGATGTCTTGGTTGGTTT GTCGGATGAACTGGCTAAACTGGATGCATTTGTAGAAGGGGTCGTTAAAAAAGTGGCTCA ATACATGGCTGACGTATTGGAGGATAGTAGGGATAAAGTTCAGGAGAATCTATTGGCCAA TGGAGTTGACTTGGTTACTTATATAACAAGGTTTCAGTGGGATATGGCTAAATATCCAAT CAAGCAGTCTCTGAAAAATATTTCTGAAATAATTGCCAAGGGAGTGACTCAGATTGACAA TGACCTGAAATCTCGAGCATCCGCATATAACAACCTGAAAGGGAATCTTCAGAATTTGGA ACGAAAGAATGCAGGAAGTTTGCTAACTAGAAGTCTAGCAGAAATTGTGAAGAAGGATGA CTTTGTTCTTGATTCAGAGTATCTCGTCACATTACTGGTCGTAGTTCCCAAGTTAAACCA CAACGACTGGATTAAGCAGTATGAAACACTAGCTGAAATGGTAGTTCCGAGGTCTAGCAA TGTTCTCTCAGAGGACCAAGACAGTTACCTATGTAATGTCACCCTGTTTAGGAAGGCAGT CGATGACTTCAGACACAAAGCCAGGGAAAACAAATTCATTGTTCGTGACTTCCAGTATAA TGAAGAGGAGATGAAGGCAGATAAAGAAGAAATGAACAGGCTTTCTACCGACAAGAAAAA GCAATTTGGACCACTTGTACGGTGGCTGAAAGTGAATTTCAGTGAGGCGTTTATTGCCTG GATTCATGTGAAAGCATTGAGGGTTTTTGTTGAGTCTGTTTTGAGGTATGGCTTACCAGT GAACTTCCAAGCAATGCTCCTTCAACCCAATAAGAAAACAATGAAGAAACTAAGAGAAGT ATTATATGAATTGTATAAACATCTAGACAGCAGTGCAGCAGCTATTATTGATGCTCCTGT GGATATTCCAGGCTTAAACCTGAGTCAGCAGGAATACTACCCCTATGTGTACTACAAGAT TGATTGCAACTTGCTGGAATTCAAGTAAAACGAGCCCCCCAGACAGCCCTGCCCTCGTGT CGGTGTCGGTGTTTGCTAACAGAATAGGTTGCCCTATGGCCGAGCCCTTAACTCTCTCTC CCCCTTGCTTGCTCTCACCTCCTTTTCTCAGCGCAGTCTCCCGTAGTGGTCCGTTTCTCA ACATTTTCAAAAGGAAACTGTATGTCTTATTTCTTCTTATTGATCAGGTCTGTAAATGTG TACTAAAAAAAAAAAAAATCAGAGTTTATTTATAAACAGAATAGTTTATTTAAAGAGAAG GTCTTTCCTCATCAATATAAAATTGTGGTATGCATTAATTCCATTTGTTACTGTTGTGAC AAAAGCCTTGTTTACAGGGGAATGGTGTAAACAGTTATACCATTTTGTTCACTGTGTTTA GTAGACATGACTGTTGAATAGTTATTAAATCGTGATATAAAGAAATGTGACAATATTCAG GTTATGTGCTTTCTTTCAAACTACAGTCTGTGAGCACTGTTGACACCCACAGGAGAGAAT AAAATTACCTGTGCAAAGGTGAAATGTGGTGTGTGTAACTTCGAAGGTGACCGTTCAGTT TGGGAACTTAATAAATGGCATCAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1576-1733, - strand, RNAz p=0.967045 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1576-1733, - strand, RNAz p=0.967045 |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 1-102, gnl|bosTau2|chr14 (37162546-37162644) | |
| 1-102, gnl|canFam2|chr13 (7531957-7532083) | |
| 1-102, gnl|dasNov1|scaffold_47967 (8408-8534) | |
| 1-102, gnl|echTel1|scaffold_122102 (455-582) | |
| 1-102, gnl|hg17|chr8 (104102503-104102630) | |
| 1-102, gnl|Hg17|chr8 (104102532-104102629) | |
| 1-102, gnl|loxAfr1|scaffold_112 (209549-209676) | |
| 1-102, gnl|mm7|chr15 (38772961-38773082) | |
| 1-102, gnl|Mm7|chr15 (38772990-38773081) | |
| 1-102, gnl|oryCun1|scaffold_60979 (287-156) | |
| 1-102, gnl|rheMac2|chr8 (105539802-105539929) | |
| 1-102, gnl|rn3|chr7 (74361969-74362093) | |
| 103-273, gnl|bosTau2|chr14 (37177704-37177874) | |
| 103-273, gnl|Hg17|chr8 (104122200-104122374) | |
| 103-273, gnl|Mm7|chr15 (38783877-38784020) | |
| 613-713, gnl|bosTau2|chr14 (37190882-37190982) | |
| 613-713, gnl|canFam2|chr13 (7559026-7559178) | |
| 613-713, gnl|dasNov1|scaffold_55878 (9082-8930) | |
| 613-713, gnl|echTel1|scaffold_102569 (4552-4389) | |
| 613-713, gnl|fr1|chrUn (181915539-181915398) | |
| 613-713, gnl|galGal2|chr2 (128003961-128004101) | |
| 613-713, gnl|hg17|chr8 (104135282-104135433) | |
| 613-713, gnl|Hg17|chr8 (104135288-104135388) | |
| 613-713, gnl|loxAfr1|scaffold_8207 (12004-12115) | |
| 613-713, gnl|mm7|chr15 (38792059-38792176) | |
| 613-713, gnl|Mm7|chr15 (38792065-38792165) | |
| 613-713, gnl|monDom2|scaffold_3 (59667495-59667344) | |
| 613-713, gnl|oryCun1|scaffold_203237 (48960-49101) | |
| 613-713, gnl|panTro1|chr7 (106526022-106526173) | |
| 613-713, gnl|rheMac2|chr8 (105572287-105572438) | |
| 613-713, gnl|rn3|chr7 (74384644-74384767) | |
| 613-713, gnl|tetNig1|chr21 (1857393-1857283) | |
| 613-713, gnl|xenTro1|scaffold_3 (5447481-5447315) | |
| 968-1068, gnl|bosTau2|chr14 (37198873-37198973) | |
| 968-1068, gnl|canFam2|chr13 (7569952-7570062) | |
| 968-1068, gnl|danRer3|chr19 (48596650-48596764) | |
| 968-1068, gnl|dasNov1|scaffold_52533 (9995-10053) | |
| 968-1068, gnl|echTel1|scaffold_274605 (20906-20798) | |
| 968-1068, gnl|fr1|chrUn (181913185-181913076) | |
| 968-1068, gnl|hg17|chr8 (104146110-104146220) | |
| 968-1068, gnl|Hg17|chr8 (104146118-104146218) | |
| 968-1068, gnl|loxAfr1|scaffold_4327 (72981-72871) | |
| 968-1068, gnl|mm7|chr15 (38800115-38800224) | |
| 968-1068, gnl|Mm7|chr15 (38800123-38800223) | |
| 968-1068, gnl|monDom2|scaffold_3 (59650490-59650379) | |
| 968-1068, gnl|oryCun1|scaffold_203237 (63105-63215) | |
| 968-1068, gnl|panTro1|chr7 (106536839-106536949) | |
| 968-1068, gnl|rheMac2|chr8 (105583110-105583220) | |
| 968-1068, gnl|rn3|chr7 (74395895-74396004) | |
| 968-1068, gnl|tetNig1|chr21 (1855574-1855468) | |
| 968-1068, gnl|xenTro1|scaffold_3 (5435939-5435828) | |
| 1193-1884, gnl|bosTau2|chr14 (37201692-37202382) | |
| 1193-1884, gnl|Hg17|chr8 (104150056-104150744) | |
| 1193-1884, gnl|Mm7|chr15 (38802610-38803230) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-102, gnl|bosTau2|chr14 (37162546-37162644) | |
| 1-102, gnl|canFam2|chr13 (7531957-7532083) | |
| 1-102, gnl|dasNov1|scaffold_47967 (8408-8534) | |
| 1-102, gnl|echTel1|scaffold_122102 (455-582) | |
| 1-102, gnl|hg17|chr8 (104102503-104102630) | |
| 1-102, gnl|Hg17|chr8 (104102532-104102629) | |
| 1-102, gnl|loxAfr1|scaffold_112 (209549-209676) | |
| 1-102, gnl|mm7|chr15 (38772961-38773082) | |
| 1-102, gnl|Mm7|chr15 (38772990-38773081) | |
| 1-102, gnl|oryCun1|scaffold_60979 (287-156) | |
| 1-102, gnl|rheMac2|chr8 (105539802-105539929) | |
| 1-102, gnl|rn3|chr7 (74361969-74362093) | |
| 103-273, gnl|bosTau2|chr14 (37177704-37177874) | |
| 103-273, gnl|Hg17|chr8 (104122200-104122374) | |
| 103-273, gnl|Mm7|chr15 (38783877-38784020) | |
| 613-713, gnl|bosTau2|chr14 (37190882-37190982) | |
| 613-713, gnl|canFam2|chr13 (7559026-7559178) | |
| 613-713, gnl|dasNov1|scaffold_55878 (9082-8930) | |
| 613-713, gnl|echTel1|scaffold_102569 (4552-4389) | |
| 613-713, gnl|fr1|chrUn (181915539-181915398) | |
| 613-713, gnl|galGal2|chr2 (128003961-128004101) | |
| 613-713, gnl|hg17|chr8 (104135282-104135433) | |
| 613-713, gnl|Hg17|chr8 (104135288-104135388) | |
| 613-713, gnl|loxAfr1|scaffold_8207 (12004-12115) | |
| 613-713, gnl|mm7|chr15 (38792059-38792176) | |
| 613-713, gnl|Mm7|chr15 (38792065-38792165) | |
| 613-713, gnl|monDom2|scaffold_3 (59667495-59667344) | |
| 613-713, gnl|oryCun1|scaffold_203237 (48960-49101) | |
| 613-713, gnl|panTro1|chr7 (106526022-106526173) | |
| 613-713, gnl|rheMac2|chr8 (105572287-105572438) | |
| 613-713, gnl|rn3|chr7 (74384644-74384767) | |
| 613-713, gnl|tetNig1|chr21 (1857393-1857283) | |
| 613-713, gnl|xenTro1|scaffold_3 (5447481-5447315) | |
| 968-1068, gnl|bosTau2|chr14 (37198873-37198973) | |
| 968-1068, gnl|canFam2|chr13 (7569952-7570062) | |
| 968-1068, gnl|danRer3|chr19 (48596650-48596764) | |
| 968-1068, gnl|dasNov1|scaffold_52533 (9995-10053) | |
| 968-1068, gnl|echTel1|scaffold_274605 (20906-20798) | |
| 968-1068, gnl|fr1|chrUn (181913185-181913076) | |
| 968-1068, gnl|hg17|chr8 (104146110-104146220) | |
| 968-1068, gnl|Hg17|chr8 (104146118-104146218) | |
| 968-1068, gnl|loxAfr1|scaffold_4327 (72981-72871) | |
| 968-1068, gnl|mm7|chr15 (38800115-38800224) | |
| 968-1068, gnl|Mm7|chr15 (38800123-38800223) | |
| 968-1068, gnl|monDom2|scaffold_3 (59650490-59650379) | |
| 968-1068, gnl|oryCun1|scaffold_203237 (63105-63215) | |
| 968-1068, gnl|panTro1|chr7 (106536839-106536949) | |
| 968-1068, gnl|rheMac2|chr8 (105583110-105583220) | |
| 968-1068, gnl|rn3|chr7 (74395895-74396004) | |
| 968-1068, gnl|tetNig1|chr21 (1855574-1855468) | |
| 968-1068, gnl|xenTro1|scaffold_3 (5435939-5435828) | |
| 1193-1884, gnl|bosTau2|chr14 (37201692-37202382) | |
| 1193-1884, gnl|Hg17|chr8 (104150056-104150744) | |
| 1193-1884, gnl|Mm7|chr15 (38802610-38803230) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| fco (0.628832) | |
| fcc (0.39557) | |
| sug (0.381874) | |
| spl (0.286369) | |
| hyp (0.285673) | |
| fce (0.271592) | |
| pan (0.23596) | |
| ece (0.229305) | |
| col (0.195008) | |
| ldo (0.194005) | |
| sto (0.179824) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| lin (0.145603) | |
| che (0.136314) | |
| ute (0.132784) | |
| ret (0.128733) | |
| bla (0.124347) | |
| ebs (0.118301) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| eje (0.0988338) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fco (0.628832) | |
| fcc (0.39557) | |
| sug (0.381874) | |
| spl (0.286369) | |
| hyp (0.285673) | |
| fce (0.271592) | |
| pan (0.23596) | |
| ece (0.229305) | |
| col (0.195008) | |
| ldo (0.194005) | |
| sto (0.179824) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| lin (0.145603) | |
| che (0.136314) | |
| ute (0.132784) | |
| ret (0.128733) | |
| bla (0.124347) | |
| ebs (0.118301) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| eje (0.0988338) |