Non-Coding RNA Search

Ss1.1-Pig4-TMW8052M24.3

Sequence:


               
               AGGGAGCCGGCGCCGGTGAGCGGGGTCCCGGGGCGAGGCCCCGCGGGTTCCTGGGATTGG
CGACGTTGGTGCTCCCGGCGCGCCAGTGGAGGGCGGGAGCCCGACGGAGGAGTGTGGGCT
GCGGGGCAGATGTCATGTGGCCTGTGCTTTGGACCGTGGTGCGTACCTATGCTCCCTATG
TCACATTCCCTGTGGCCTTTGTGGTCGGGGCTGTGGGCTACCACCTGGAATGGTTCATCA
GAGGGAAGGATCCCCAGCCTGTGGAGGAGGAGAAGAGCATCTCAGAGCGCCGGGAGGACC
GCAAGCTGGATGAGCTGCTAGGCAAGGACCACACCCAGGTGGTGAGCCTTAAGGACAAGC
TGGAATTTGCCCCTAAAGCTGTCCTGAACAGAAACCGACCGGAGAAGAATTAACGAAGGA
CACAGGGCCCTATGGGTCCTTCAGTGGGCCTTGTCTGGCCCTGCCACCATGTCGACCCAG
CTCTAGAACCCACATCTGATTTGCTTTATTGCTTCTGGCCCCTCTCGCCCCACACAGCCA
CACACTCTGGCTGCTCTGCTGCGGCCAGGCAGACGCGCTGGTAGCTGAGGGGCCAGTGAA
GAGGAAGGCTCACGAGGGTTCTGACCTGAAAGTTGCATCTGCTGGTTGGTGGCCACCGCT
GCTCAGGCTTCTGCGCTGCTGGGTGCACCACTGGGAGGAGTTATGAGATGAACACTGGCT
CTCAGTCCCTTCGGGGAAGCAGTTCGGCCCCAAGGGGGAGTGGCTGGGATTGGGGGTTGT
CTTTAGGAGGGATACCTACATGTCTAGTTCCAGTTCGCACTGGGAGGAGGTCACAGATCT
GCCTGGCTTGCCCTGTCCTTTGTGCTCATTCTCCCTCCAGTCCTGGCCTAGCACTCAGGC
AGGGATTCCCCTGGGAAGGAAAGCCCTTTTGTTCTTGGGAGCCCAGGCTGTTCACCTTGG
GGCATGTGACTTCGCTTGAAAACAGTCACTACCTTTCACCCCCCCATCACTGTTCAGAGC
AAAACTTGATTAAAGTGGTGTCTGAGAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGAGCCGGCGCCGGTGAGCGGGGTCCCGGGGCGAGGCCCCGCGGGTTCCTGGGATTGG
CGACGTTGGTGCTCCCGGCGCGCCAGTGGAGGGCGGGAGCCCGACGGAGGAGTGTGGGCT
GCGGGGCAGATGTCATGTGGCCTGTGCTTTGGACCGTGGTGCGTACCTATGCTCCCTATG
TCACATTCCCTGTGGCCTTTGTGGTCGGGGCTGTGGGCTACCACCTGGAATGGTTCATCA
GAGGGAAGGATCCCCAGCCTGTGGAGGAGGAGAAGAGCATCTCAGAGCGCCGGGAGGACC
GCAAGCTGGATGAGCTGCTAGGCAAGGACCACACCCAGGTGGTGAGCCTTAAGGACAAGC
TGGAATTTGCCCCTAAAGCTGTCCTGAACAGAAACCGACCGGAGAAGAATTAACGAAGGA
CACAGGGCCCTATGGGTCCTTCAGTGGGCCTTGTCTGGCCCTGCCACCATGTCGACCCAG
CTCTAGAACCCACATCTGATTTGCTTTATTGCTTCTGGCCCCTCTCGCCCCACACAGCCA
CACACTCTGGCTGCTCTGCTGCGGCCAGGCAGACGCGCTGGTAGCTGAGGGGCCAGTGAA
GAGGAAGGCTCACGAGGGTTCTGACCTGAAAGTTGCATCTGCTGGTTGGTGGCCACCGCT
GCTCAGGCTTCTGCGCTGCTGGGTGCACCACTGGGAGGAGTTATGAGATGAACACTGGCT
CTCAGTCCCTTCGGGGAAGCAGTTCGGCCCCAAGGGGGAGTGGCTGGGATTGGGGGTTGT
CTTTAGGAGGGATACCTACATGTCTAGTTCCAGTTCGCACTGGGAGGAGGTCACAGATCT
GCCTGGCTTGCCCTGTCCTTTGTGCTCATTCTCCCTCCAGTCCTGGCCTAGCACTCAGGC
AGGGATTCCCCTGGGAAGGAAAGCCCTTTTGTTCTTGGGAGCCCAGGCTGTTCACCTTGG
GGCATGTGACTTCGCTTGAAAACAGTCACTACCTTTCACCCCCCCATCACTGTTCAGAGC
AAAACTTGATTAAAGTGGTGTCTGAGAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15080220|gb|AAH11880.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15080220|gb|AAH11880.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               409-603, - strand, RNAz p=0.991755

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               409-603, - strand, RNAz p=0.991755

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               90-700, gnl|bosTau2|chr21 (40728287-40727711)
               

               
               90-700, gnl|Hg17|chr1 (34990678-34990126)
               

               
               90-700, gnl|Mm7|chr4 (126691545-126692116)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-700, gnl|bosTau2|chr21 (40728287-40727711)
               

               
               90-700, gnl|Hg17|chr1 (34990678-34990126)
               

               
               90-700, gnl|Mm7|chr4 (126691545-126692116)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               nmm (0.265604)
               

               
               cov (0.264306)
               

               
               eje (0.197668)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               ctl (0.153069)
               

               
               che (0.136314)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.265604)
               

               
               cov (0.264306)
               

               
               eje (0.197668)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               ctl (0.153069)
               

               
               che (0.136314)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

	90-700, gnl\|bosTau2\|chr21 (40728287-40727711)
	90-700, gnl\|Hg17\|chr1 (34990678-34990126)
	90-700, gnl\|Mm7\|chr4 (126691545-126692116)

	nmm (0.265604)
	cov (0.264306)
	eje (0.197668)
	nlu (0.191681)
	ton (0.1755)
	nco (0.161734)
	ctl (0.153069)
	che (0.136314)
	ebs (0.118301)
	jca (0.11396)