Non-Coding RNA Search

Ss1.1-Pig4-TMW8052N01.3

Sequence:


               
               CTGCCGGCAGCAGAGACCACAGTGAAGGAGACAGCTACTGCTGCAGCTCCCGCTGCTACC
GCCGCCGTAGACCCCTGACACCGCCGCCACTGAGGAGGAAGAGCCGGAGAAGGATGTGGG
TTTTTGGTTATGGGTCCCTCATCTGGAAGGTGGACTTCCCCTATCAGGACAAGCTGGTTG
GATATATCACAGGCTACAGCAGGCGCTTCTGGCAAGGCAGCACCGACCACCGCGGAGTTC
CTGGCAAGGGCTGTGTATGGGGTGTTGCTTACAGACTGCCAGTAGGAAAAGAAGAAGAAG
TAAAAGCATACCTTGACTTCAGAGAGAAAGGAGGCTACAGGACCACAACAGTCAATTTTT
ATCCAAAAGATTCTACAACAGAACCATTCAGTGTGTTGCTATATATTGGAAGATGTGATA
ATCCTAATTATCTTGGTCCTGCACCTCTGGAGGACATTGCTGAACAAATTTTTAATGCAG
CTGGTCCGAGTGGAAGAAATACAGAATATCTTTTTGAACTTGCAAATTCTATTAGAAGCC
TTGTGCCAGAAGATGCAGATGAGCATCTTTTCTCTTTGGAAAAATTAGTTAAGGAACGTT
TAGAAGAAAAACAGAACTTCAGTTGCTTAAAAAGACCTAATCATTGAGAGTTTTTGTCTT
CAGAGAATAGCTTCACTGCACAATGGCAATATGATTTGTAAACATTTTTACTGGAAGATC
TTAGCTGTGTTTAATGTTGTAGTCGAGATATCATCAAAATTTATAGTTTAATTGCAAGTG
GCCTAAACACATACATATGTGAAATATTGGGGTATAGTTAAAGAAAAAATTTGTTTCAAT
AATATAATGATTTTGCAACTATATGACCCTGAATACTTGCTCAAAAGAAGTGAGTTCTTT
AGAAAAATATAATGAAGGACTCAGTTCAGAACTTGTTTTTATCTGAATAAATATATTTCT
GTTGTTTCATATTACAATATTATTTTGAAATTGTAGAGAATTAAACCAAAAGTCCAGTAA
ACATAATAAGGTTATACCTTCAATGTATCCCCACACATTAACTCTGTAACTGTGGTTTAA
AACACATAAGTGTAAAATAAGAAGTAACTAGAAATGTATGGTAGTATAGAAAAAATTTTG
GCCTTGATTGTGAATTTCCTTGTTTAGGTATTAAATAAGACCCTTTCTAATTTAAGTCAA
AAATTTTAGCATTTTAATTTAAAATTTTCCTTGGAATTATAATGTACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCGGCAGCAGAGACCACAGTGAAGGAGACAGCTACTGCTGCAGCTCCCGCTGCTACC
GCCGCCGTAGACCCCTGACACCGCCGCCACTGAGGAGGAAGAGCCGGAGAAGGATGTGGG
TTTTTGGTTATGGGTCCCTCATCTGGAAGGTGGACTTCCCCTATCAGGACAAGCTGGTTG
GATATATCACAGGCTACAGCAGGCGCTTCTGGCAAGGCAGCACCGACCACCGCGGAGTTC
CTGGCAAGGGCTGTGTATGGGGTGTTGCTTACAGACTGCCAGTAGGAAAAGAAGAAGAAG
TAAAAGCATACCTTGACTTCAGAGAGAAAGGAGGCTACAGGACCACAACAGTCAATTTTT
ATCCAAAAGATTCTACAACAGAACCATTCAGTGTGTTGCTATATATTGGAAGATGTGATA
ATCCTAATTATCTTGGTCCTGCACCTCTGGAGGACATTGCTGAACAAATTTTTAATGCAG
CTGGTCCGAGTGGAAGAAATACAGAATATCTTTTTGAACTTGCAAATTCTATTAGAAGCC
TTGTGCCAGAAGATGCAGATGAGCATCTTTTCTCTTTGGAAAAATTAGTTAAGGAACGTT
TAGAAGAAAAACAGAACTTCAGTTGCTTAAAAAGACCTAATCATTGAGAGTTTTTGTCTT
CAGAGAATAGCTTCACTGCACAATGGCAATATGATTTGTAAACATTTTTACTGGAAGATC
TTAGCTGTGTTTAATGTTGTAGTCGAGATATCATCAAAATTTATAGTTTAATTGCAAGTG
GCCTAAACACATACATATGTGAAATATTGGGGTATAGTTAAAGAAAAAATTTGTTTCAAT
AATATAATGATTTTGCAACTATATGACCCTGAATACTTGCTCAAAAGAAGTGAGTTCTTT
AGAAAAATATAATGAAGGACTCAGTTCAGAACTTGTTTTTATCTGAATAAATATATTTCT
GTTGTTTCATATTACAATATTATTTTGAAATTGTAGAGAATTAAACCAAAAGTCCAGTAA
ACATAATAAGGTTATACCTTCAATGTATCCCCACACATTAACTCTGTAACTGTGGTTTAA
AACACATAAGTGTAAAATAAGAAGTAACTAGAAATGTATGGTAGTATAGAAAAAATTTTG
GCCTTGATTGTGAATTTCCTTGTTTAGGTATTAAATAAGACCCTTTCTAATTTAAGTCAA
AAATTTTAGCATTTTAATTTAAAATTTTCCTTGGAATTATAATGTACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34879640|ref|XP_341269.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34879640|ref|XP_341269.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               326-445, - strand, RNAz p=0.977078

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               326-445, - strand, RNAz p=0.977078

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               247-1248, gnl|bosTau2|chr11 (25591883-25592892)
               

               
               247-1248, gnl|Hg17|chr2 (53912928-53913894)
               

               
               247-1248, gnl|Mm7|chr11 (30929754-30928902)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               247-1248, gnl|bosTau2|chr11 (25591883-25592892)
               

               
               247-1248, gnl|Hg17|chr2 (53912928-53913894)
               

               
               247-1248, gnl|Mm7|chr11 (30929754-30928902)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               bfe (0.449573)
               

               
               isp (0.300752)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               nbm (0.0993246)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.449573)
               

               
               isp (0.300752)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               nbm (0.0993246)

	247-1248, gnl\|bosTau2\|chr11 (25591883-25592892)
	247-1248, gnl\|Hg17\|chr2 (53912928-53913894)
	247-1248, gnl\|Mm7\|chr11 (30929754-30928902)

	bfe (0.449573)
	isp (0.300752)
	fco (0.157208)
	tbr (0.154178)
	lin (0.145603)
	lyg (0.133103)
	kid (0.129735)
	tra (0.123092)
	nbm (0.0993246)