Ss1.1-Pig4-TMW8052N04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCGTTCTGGCTGGGGCTGTCGACCGCGGGGCGGAGGCACTCGCGCGGGGGGTAACTCGG GTCTGGGTTCGGGTGCCGCGCAGTTCTCCCCGTCTAAAAGTTGGTTTTAATTGGTTGCCC ACAGGATTGACTTGGCCTCTACTTCTTGTTAAGAAAATACATCTCTTGTTTTATCAGGTG TGTGTGGTTTCAGCGCAGCATGGCTGTGGTCATCCGTTTGCAAGGTCTCCCAATTGTGGC GGGGACCATGGACATTCGCCACTTCTTCTCTGGATTGACCATCCCTGATGGGGGCGTGCA TATTGTAGGGGGTCTCCCCGATGGCCCACTGCGTGACCTTGGTTCAGCTGTCCATTTCAT GTGACCACCTCACTGACAAGGACATCGGCTCCAAGTCTGACCCACTCTGTGTCCTTTTAC AGGATGTAGGAGGGGGCACCTGGGCTGAGCTTGGCCGTACAGAGCGAGTACGGAACTGCT CGAGCCCTGAGTTCTCCAAGACTCTGCAGCTTGAGTACCACTTTGAAACGGTTCAAAAAC TCCGATTTGGTATCTATGACATAGACAATAAGACGCCTGAGCTGGGGGATGATGACTTCC TAGGAGGGGCTGAGTGTTCCCTAGGACAGATTGTATCCAGCCAGATACTAACTCTACCCT TGATGTTGAAGCCTGGAAAACCTGCTGGGCGAGGGACCATCACGGTCTCAGCTCAGGAGT TGAAGGATAGTCGAGTAGTGACCATGGAGGTGGAGGCCAGAAACCTAGATAAGAAGGACT TCCTGGGGAAATCAGATCCATTCTTGGAGTTCTTCCGCCAGGGTGATGGGAAATGGCACC TGGCATACAGATCAGAGGTCATCAAGAACAACCTGAACCCTACTTGGAAGCGCTTCTCTG TTCCTTTTCAGCATTTCTGTGGGGGAGACCCCAGTACACCCATCCAGGTGCGATGTTCGG ATTATGACAGCGATGGTTCACATGATCTCATTGGTACCTTCCACACTACCTTGGCCCAAC TGCAGGCAGTCCCGGCTGAGTTTGAATGCATCCACCCTGAGAAACAGCAGAAAAAGAAAA GCTACAAGAACTCTGGAATAGTCCGTGTCAAGATTTGTCAGGTAGAAACAGAGTATTCAT TCCTGGACTATGTGATGGGAGGCTGTCAAATCAACTTCACTGTGGGTGTGGACTTCACAG GCTCCAATGGAGATCCTTCCTCACCTGATTCTCTGCACTACCTGAGCCCAACAGGGGTCA ATGAGTACCTGACAGCACTGTGGAGTGTGGGCAGCGTGGTTCAGGACTATGACTCGGACA AGCTGTTCCCAGCATTTGGATTTGGGGCTCAGGTACCCCCTGACTGGCAGGTCTCCCATG AATTTGCCTTGAACTTCAACCCCAGTAACCCCTACTGTGCAGGCATCCAGGGCATTGTGG ATGCCTACCGCCAGGCCCTACCCCAAGTTCGCCTCTATGGTCCCACCAACTTTGCACCCA TCATCAACCATGTGGCCAGGTTTGCAGCCCAGGCTGCTCATCAGAAGAGTGCCTCGCAAT ACTTCGTGCTGTTGCTGCTAACTGATGGTGCTGTGACAGATGTGGAGGCCACACGTGAGG CTGTGGTTCGAGCCTCCTACCTGCCCATGTCAGTGATCATCGTGGGTGTGGGTGGTGCTG ACTTCGAGGCCATGGAGCAACTGGACGCTGATGGCGGACCCCTGCATACACGCTCCGGGG AGGCAGCTGCTCGTGACATAGTGCAATTTGTGCCCTACCGCCGCTTTCAGAATGCCCCTC GAGAGGCATTGGCGCAGACTGTACTTGCAGAAGTACCCACGCAACTGGTTTCCTACTTCA AGGCCCAAGGTTGGGCTCCATTCAAGCCACTCCCACCCCCAACCAAGGGCCCTGCACAGG CCCCTCAGGCCTAGATTCCCTTGGCCTAGATTCCTTAGGACTGTGGCCAGTCCTCAATCC TATGTTCCCAAGGTCCCCCAACCCTGAACACACATTCCTCAGTGCTTGCACTTTCTGTTT TGTACTTTTATACTTCCTCCTCTCCATCCCACTGGCTTGCCCAGGAGCCCCTCATTCAAT AAAGATCAATGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCGTTCTGGCTGGGGCTGTCGACCGCGGGGCGGAGGCACTCGCGCGGGGGGTAACTCGG GTCTGGGTTCGGGTGCCGCGCAGTTCTCCCCGTCTAAAAGTTGGTTTTAATTGGTTGCCC ACAGGATTGACTTGGCCTCTACTTCTTGTTAAGAAAATACATCTCTTGTTTTATCAGGTG TGTGTGGTTTCAGCGCAGCATGGCTGTGGTCATCCGTTTGCAAGGTCTCCCAATTGTGGC GGGGACCATGGACATTCGCCACTTCTTCTCTGGATTGACCATCCCTGATGGGGGCGTGCA TATTGTAGGGGGTCTCCCCGATGGCCCACTGCGTGACCTTGGTTCAGCTGTCCATTTCAT GTGACCACCTCACTGACAAGGACATCGGCTCCAAGTCTGACCCACTCTGTGTCCTTTTAC AGGATGTAGGAGGGGGCACCTGGGCTGAGCTTGGCCGTACAGAGCGAGTACGGAACTGCT CGAGCCCTGAGTTCTCCAAGACTCTGCAGCTTGAGTACCACTTTGAAACGGTTCAAAAAC TCCGATTTGGTATCTATGACATAGACAATAAGACGCCTGAGCTGGGGGATGATGACTTCC TAGGAGGGGCTGAGTGTTCCCTAGGACAGATTGTATCCAGCCAGATACTAACTCTACCCT TGATGTTGAAGCCTGGAAAACCTGCTGGGCGAGGGACCATCACGGTCTCAGCTCAGGAGT TGAAGGATAGTCGAGTAGTGACCATGGAGGTGGAGGCCAGAAACCTAGATAAGAAGGACT TCCTGGGGAAATCAGATCCATTCTTGGAGTTCTTCCGCCAGGGTGATGGGAAATGGCACC TGGCATACAGATCAGAGGTCATCAAGAACAACCTGAACCCTACTTGGAAGCGCTTCTCTG TTCCTTTTCAGCATTTCTGTGGGGGAGACCCCAGTACACCCATCCAGGTGCGATGTTCGG ATTATGACAGCGATGGTTCACATGATCTCATTGGTACCTTCCACACTACCTTGGCCCAAC TGCAGGCAGTCCCGGCTGAGTTTGAATGCATCCACCCTGAGAAACAGCAGAAAAAGAAAA GCTACAAGAACTCTGGAATAGTCCGTGTCAAGATTTGTCAGGTAGAAACAGAGTATTCAT TCCTGGACTATGTGATGGGAGGCTGTCAAATCAACTTCACTGTGGGTGTGGACTTCACAG GCTCCAATGGAGATCCTTCCTCACCTGATTCTCTGCACTACCTGAGCCCAACAGGGGTCA ATGAGTACCTGACAGCACTGTGGAGTGTGGGCAGCGTGGTTCAGGACTATGACTCGGACA AGCTGTTCCCAGCATTTGGATTTGGGGCTCAGGTACCCCCTGACTGGCAGGTCTCCCATG AATTTGCCTTGAACTTCAACCCCAGTAACCCCTACTGTGCAGGCATCCAGGGCATTGTGG ATGCCTACCGCCAGGCCCTACCCCAAGTTCGCCTCTATGGTCCCACCAACTTTGCACCCA TCATCAACCATGTGGCCAGGTTTGCAGCCCAGGCTGCTCATCAGAAGAGTGCCTCGCAAT ACTTCGTGCTGTTGCTGCTAACTGATGGTGCTGTGACAGATGTGGAGGCCACACGTGAGG CTGTGGTTCGAGCCTCCTACCTGCCCATGTCAGTGATCATCGTGGGTGTGGGTGGTGCTG ACTTCGAGGCCATGGAGCAACTGGACGCTGATGGCGGACCCCTGCATACACGCTCCGGGG AGGCAGCTGCTCGTGACATAGTGCAATTTGTGCCCTACCGCCGCTTTCAGAATGCCCCTC GAGAGGCATTGGCGCAGACTGTACTTGCAGAAGTACCCACGCAACTGGTTTCCTACTTCA AGGCCCAAGGTTGGGCTCCATTCAAGCCACTCCCACCCCCAACCAAGGGCCCTGCACAGG CCCCTCAGGCCTAGATTCCCTTGGCCTAGATTCCTTAGGACTGTGGCCAGTCCTCAATCC TATGTTCCCAAGGTCCCCCAACCCTGAACACACATTCCTCAGTGCTTGCACTTTCTGTTT TGTACTTTTATACTTCCTCCTCTCCATCCCACTGGCTTGCCCAGGAGCCCCTCATTCAAT AAAGATCAATGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 448-567, - strand, RNAz p=0.713559 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 448-567, - strand, RNAz p=0.713559 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 175-313, gnl|bosTau2|chr13 (45098518-45098380) | |
| 175-313, gnl|Hg17|chr20 (33706683-33706545) | |
| 175-313, gnl|Mm7|chr2 (155839233-155839095) | |
| 448-635, gnl|bosTau2|chr13 (45077189-45077001) | |
| 448-635, gnl|canFam2|chr24 (27530510-27530715) | |
| 448-635, gnl|danRer3|chr11 (26400146-26399953) | |
| 448-635, gnl|dasNov1|scaffold_288285 (462-666) | |
| 448-635, gnl|echTel1|scaffold_314238 (11133-11332) | |
| 448-635, gnl|fr1|chrUn (254477669-254477859) | |
| 448-635, gnl|galGal2|chr20 (985316-985110) | |
| 448-635, gnl|hg17|chr20 (33683841-33684046) | |
| 448-635, gnl|Hg17|chr20 (33684034-33683846) | |
| 448-635, gnl|loxAfr1|scaffold_25990 (42871-43076) | |
| 448-635, gnl|mm7|chr2 (155819909-155820114) | |
| 448-635, gnl|Mm7|chr2 (155820102-155819914) | |
| 448-635, gnl|monDom2|scaffold_6 (11364997-11364791) | |
| 448-635, gnl|oryCun1|scaffold_206166 (28903-29108) | |
| 448-635, gnl|panTro1|chr21 (35704077-35704282) | |
| 448-635, gnl|rheMac2|chr10 (28900650-28900445) | |
| 448-635, gnl|rn3|chr3 (146393637-146393842) | |
| 448-635, gnl|tetNig1|chrUn_random (12066149-12066347) | |
| 448-635, gnl|xenTro1|scaffold_35 (2882066-2882271) | |
| 856-967, gnl|bosTau2|chr13 (45076238-45076127) | |
| 856-967, gnl|Hg17|chr20 (33683115-33683004) | |
| 856-967, gnl|Mm7|chr2 (155819281-155819174) | |
| 1031-1131, gnl|bosTau2|chr13 (45075819-45075720) | |
| 1031-1131, gnl|Hg17|chr20 (33682694-33682595) | |
| 1031-1131, gnl|Mm7|chr2 (155818877-155818778) | |
| 1182-1316, gnl|bosTau2|chr13 (45075495-45075360) | |
| 1182-1316, gnl|canFam2|chr24 (27528860-27529009) | |
| 1182-1316, gnl|danRer3|chr11 (26405060-26404916) | |
| 1182-1316, gnl|dasNov1|scaffold_46125 (44630-44480) | |
| 1182-1316, gnl|echTel1|scaffold_314238 (9608-9765) | |
| 1182-1316, gnl|fr1|chrUn (254474454-254474603) | |
| 1182-1316, gnl|galGal2|chr20 (993852-993703) | |
| 1182-1316, gnl|hg17|chr20 (33682229-33682378) | |
| 1182-1316, gnl|Hg17|chr20 (33682370-33682236) | |
| 1182-1316, gnl|loxAfr1|scaffold_25990 (41222-41371) | |
| 1182-1316, gnl|mm7|chr2 (155818406-155818555) | |
| 1182-1316, gnl|Mm7|chr2 (155818547-155818413) | |
| 1182-1316, gnl|monDom2|scaffold_6 (11367099-11366946) | |
| 1182-1316, gnl|oryCun1|scaffold_206166 (27276-27425) | |
| 1182-1316, gnl|panTro1|chr21 (35702466-35702615) | |
| 1182-1316, gnl|rheMac2|chr10 (28902611-28902462) | |
| 1182-1316, gnl|rn3|chr3 (146392073-146392222) | |
| 1182-1316, gnl|tetNig1|chrUn_random (12063553-12063702) | |
| 1182-1316, gnl|xenTro1|scaffold_35 (2877019-2877168) | |
| 1552-1794, gnl|bosTau2|chr10 (12421713-12421470) | |
| 1552-1794, gnl|Hg17|chr14 (23616197-23616440) | |
| 1552-1794, gnl|Mm7|chr14 (50383390-50383633) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 175-313, gnl|bosTau2|chr13 (45098518-45098380) | |
| 175-313, gnl|Hg17|chr20 (33706683-33706545) | |
| 175-313, gnl|Mm7|chr2 (155839233-155839095) | |
| 448-635, gnl|bosTau2|chr13 (45077189-45077001) | |
| 448-635, gnl|canFam2|chr24 (27530510-27530715) | |
| 448-635, gnl|danRer3|chr11 (26400146-26399953) | |
| 448-635, gnl|dasNov1|scaffold_288285 (462-666) | |
| 448-635, gnl|echTel1|scaffold_314238 (11133-11332) | |
| 448-635, gnl|fr1|chrUn (254477669-254477859) | |
| 448-635, gnl|galGal2|chr20 (985316-985110) | |
| 448-635, gnl|hg17|chr20 (33683841-33684046) | |
| 448-635, gnl|Hg17|chr20 (33684034-33683846) | |
| 448-635, gnl|loxAfr1|scaffold_25990 (42871-43076) | |
| 448-635, gnl|mm7|chr2 (155819909-155820114) | |
| 448-635, gnl|Mm7|chr2 (155820102-155819914) | |
| 448-635, gnl|monDom2|scaffold_6 (11364997-11364791) | |
| 448-635, gnl|oryCun1|scaffold_206166 (28903-29108) | |
| 448-635, gnl|panTro1|chr21 (35704077-35704282) | |
| 448-635, gnl|rheMac2|chr10 (28900650-28900445) | |
| 448-635, gnl|rn3|chr3 (146393637-146393842) | |
| 448-635, gnl|tetNig1|chrUn_random (12066149-12066347) | |
| 448-635, gnl|xenTro1|scaffold_35 (2882066-2882271) | |
| 856-967, gnl|bosTau2|chr13 (45076238-45076127) | |
| 856-967, gnl|Hg17|chr20 (33683115-33683004) | |
| 856-967, gnl|Mm7|chr2 (155819281-155819174) | |
| 1031-1131, gnl|bosTau2|chr13 (45075819-45075720) | |
| 1031-1131, gnl|Hg17|chr20 (33682694-33682595) | |
| 1031-1131, gnl|Mm7|chr2 (155818877-155818778) | |
| 1182-1316, gnl|bosTau2|chr13 (45075495-45075360) | |
| 1182-1316, gnl|canFam2|chr24 (27528860-27529009) | |
| 1182-1316, gnl|danRer3|chr11 (26405060-26404916) | |
| 1182-1316, gnl|dasNov1|scaffold_46125 (44630-44480) | |
| 1182-1316, gnl|echTel1|scaffold_314238 (9608-9765) | |
| 1182-1316, gnl|fr1|chrUn (254474454-254474603) | |
| 1182-1316, gnl|galGal2|chr20 (993852-993703) | |
| 1182-1316, gnl|hg17|chr20 (33682229-33682378) | |
| 1182-1316, gnl|Hg17|chr20 (33682370-33682236) | |
| 1182-1316, gnl|loxAfr1|scaffold_25990 (41222-41371) | |
| 1182-1316, gnl|mm7|chr2 (155818406-155818555) | |
| 1182-1316, gnl|Mm7|chr2 (155818547-155818413) | |
| 1182-1316, gnl|monDom2|scaffold_6 (11367099-11366946) | |
| 1182-1316, gnl|oryCun1|scaffold_206166 (27276-27425) | |
| 1182-1316, gnl|panTro1|chr21 (35702466-35702615) | |
| 1182-1316, gnl|rheMac2|chr10 (28902611-28902462) | |
| 1182-1316, gnl|rn3|chr3 (146392073-146392222) | |
| 1182-1316, gnl|tetNig1|chrUn_random (12063553-12063702) | |
| 1182-1316, gnl|xenTro1|scaffold_35 (2877019-2877168) | |
| 1552-1794, gnl|bosTau2|chr10 (12421713-12421470) | |
| 1552-1794, gnl|Hg17|chr14 (23616197-23616440) | |
| 1552-1794, gnl|Mm7|chr14 (50383390-50383633) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| cst (0.420109) | |
| nep (0.36785) | |
| fbs (0.350693) | |
| ecc (0.345105) | |
| cte (0.29274) | |
| tes (0.207814) | |
| eje (0.197668) | |
| aor (0.195274) | |
| ill (0.175593) | |
| nje (0.16592) | |
| cki (0.165235) | |
| cje (0.165235) | |
| csp (0.161186) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| cbl (0.114797) | |
| nbm (0.0993246) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cst (0.420109) | |
| nep (0.36785) | |
| fbs (0.350693) | |
| ecc (0.345105) | |
| cte (0.29274) | |
| tes (0.207814) | |
| eje (0.197668) | |
| aor (0.195274) | |
| ill (0.175593) | |
| nje (0.16592) | |
| cki (0.165235) | |
| cje (0.165235) | |
| csp (0.161186) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| cbl (0.114797) | |
| nbm (0.0993246) |