Ss1.1-Pig4-TMW8052N11.5
|
TCCTCTTCCCGGAAGCACTGGAGGACGTTCCCTGTTAACTGCTTCGCGATGTGTGGGGAC
TGTGTGGAGAAGGAATATCCCAACAGGGGTAACATCTGCCTGGAGAATGGATCTTTCTTG
CTGAACTTTACAGGCTGTGCAGTATGCAATAAGCGGGATTTTATGCTGATCACAAACAAA
TCTTTCAAAGAGGAAGATGGAGAAGAAATAGTTACCTATGATCATCTGTGTAAGAATTGT
CATCATGTCATAGCCAGGCATGAGTATACGTTCAGTATCATGGATGAATTTCAGGAGTAT
ACCATGCTGTGTCTGTTATGTGGTAAAGCCGAAGATACTATCAGTATTCTTCCCGATGAC
CCCCGACAAATGACTCTGTTATTCTAAGGATCCTTCTGCAGTTCTCTTGTAACGGTGTTG
TGTTGGTTTACCATCCAGCAAGCCTCATGGTTTGTCTAACCTAGTTTGTAATGGAAATTA
TGTGCATATTGTTTTTTTCTGCCTAGGTTTACCTATTCTTTGAAAGAAAAAGTAATTTAG
GGGATTGTTCTCTAGAGCTGAGCTCTTCTGCTAAGGTTCTCAGTGCGCATCAGTGCAGCT
AGAATGAAGTGTCTTTGTTAGAGGTTAGGTGGCTGAAAAAGAACTAGGATGAGAGCACAT
CTAGTGCCCATATCTTGGTTGCAATAAGAGGAACTAGGACTCCTCAGGGGAATGACTGAG
TCTAGGATTGGGGCAGTAAATGTGAAAGATGAGCTTGGAGTATCTTGAGTCACAAAAAGG
GAAGTGCTCAAAAGAACAGTCACAATGTTTGGGAGTATGTCAGAGGGACAGGAGAACCAG
CTGAAGGGGCTCTTGGTGGCCGACGTTGGAAAAGTTTGAGCAAGAAAATAAAGTAGTATT
GGATTATAACCGAAACTATAAAAT
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Blue-coloured subsequences are predicted RNA structures by RNAz
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TCCTCTTCCCGGAAGCACTGGAGGACGTTCCCTGTTAACTGCTTCGCGATGTGTGGGGAC
TGTGTGGAGAAGGAATATCCCAACAGGGGTAACATCTGCCTGGAGAATGGATCTTTCTTG
CTGAACTTTACAGGCTGTGCAGTATGCAATAAGCGGGATTTTATGCTGATCACAAACAAA
TCTTTCAAAGAGGAAGATGGAGAAGAAATAGTTACCTATGATCATCTGTGTAAGAATTGT
CATCATGTCATAGCCAGGCATGAGTATACGTTCAGTATCATGGATGAATTTCAGGAGTAT
ACCATGCTGTGTCTGTTATGTGGTAAAGCCGAAGATACTATCAGTATTCTTCCCGATGAC
CCCCGACAAATGACTCTGTTATTCTAAGGATCCTTCTGCAGTTCTCTTGTAACGGTGTTG
TGTTGGTTTACCATCCAGCAAGCCTCATGGTTTGTCTAACCTAGTTTGTAATGGAAATTA
TGTGCATATTGTTTTTTTCTGCCTAGGTTTACCTATTCTTTGAAAGAAAAAGTAATTTAG
GGGATTGTTCTCTAGAGCTGAGCTCTTCTGCTAAGGTTCTCAGTGCGCATCAGTGCAGCT
AGAATGAAGTGTCTTTGTTAGAGGTTAGGTGGCTGAAAAAGAACTAGGATGAGAGCACAT
CTAGTGCCCATATCTTGGTTGCAATAAGAGGAACTAGGACTCCTCAGGGGAATGACTGAG
TCTAGGATTGGGGCAGTAAATGTGAAAGATGAGCTTGGAGTATCTTGAGTCACAAAAAGG
GAAGTGCTCAAAAGAACAGTCACAATGTTTGGGAGTATGTCAGAGGGACAGGAGAACCAG
CTGAAGGGGCTCTTGGTGGCCGACGTTGGAAAAGTTTGAGCAAGAAAATAAAGTAGTATT
GGATTATAACCGAAACTATAAAAT
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gi|18088694|gb|AAH20550.1| |
Protein identifier
|
gi|18088694|gb|AAH20550.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
87-230, gnl|bosTau2|chr10 (52365704-52365847) |
|
87-230, gnl|canFam2|chr8 (42337192-42337357) |
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87-230, gnl|dasNov1|scaffold_49187 (4516-4679) |
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87-230, gnl|echTel1|scaffold_245773 (3417-3582) |
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87-230, gnl|fr1|chrUn (80764540-80764684) |
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87-230, gnl|hg17|chr14 (64460431-64460596) |
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87-230, gnl|Hg17|chr14 (64460461-64460604) |
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87-230, gnl|mm7|chr12 (74731918-74732077) |
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87-230, gnl|Mm7|chr12 (74731942-74732085) |
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87-230, gnl|monDom2|scaffold_8 (78761365-78761526) |
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87-230, gnl|oryCun1|scaffold_204710 (19156-18993) |
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87-230, gnl|panTro1|chr15 (64031801-64031966) |
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87-230, gnl|rheMac2|chr7 (127923140-127923304) |
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87-230, gnl|rn3|chr6 (99358722-99358881) |
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87-230, gnl|tetNig1|chr14 (4120403-4120266) |
| |
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289-530, gnl|bosTau2|chr10 (52373307-52373543) |
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289-530, gnl|Hg17|chr14 (64468603-64468842) |
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289-530, gnl|Mm7|chr12 (74741492-74741702) |
| |
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557-924, gnl|bosTau2|chr10 (52373686-52374054) |
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557-924, gnl|Hg17|chr14 (64468873-64469242) |
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557-924, gnl|Mm7|chr12 (74741944-74742490) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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87-230, gnl|bosTau2|chr10 (52365704-52365847) |
|
87-230, gnl|canFam2|chr8 (42337192-42337357) |
|
87-230, gnl|dasNov1|scaffold_49187 (4516-4679) |
|
87-230, gnl|echTel1|scaffold_245773 (3417-3582) |
|
87-230, gnl|fr1|chrUn (80764540-80764684) |
|
87-230, gnl|hg17|chr14 (64460431-64460596) |
|
87-230, gnl|Hg17|chr14 (64460461-64460604) |
|
87-230, gnl|mm7|chr12 (74731918-74732077) |
|
87-230, gnl|Mm7|chr12 (74731942-74732085) |
|
87-230, gnl|monDom2|scaffold_8 (78761365-78761526) |
|
87-230, gnl|oryCun1|scaffold_204710 (19156-18993) |
|
87-230, gnl|panTro1|chr15 (64031801-64031966) |
|
87-230, gnl|rheMac2|chr7 (127923140-127923304) |
|
87-230, gnl|rn3|chr6 (99358722-99358881) |
|
87-230, gnl|tetNig1|chr14 (4120403-4120266) |
| |
|
289-530, gnl|bosTau2|chr10 (52373307-52373543) |
|
289-530, gnl|Hg17|chr14 (64468603-64468842) |
|
289-530, gnl|Mm7|chr12 (74741492-74741702) |
| |
|
557-924, gnl|bosTau2|chr10 (52373686-52374054) |
|
557-924, gnl|Hg17|chr14 (64468873-64469242) |
|
557-924, gnl|Mm7|chr12 (74741944-74742490) |
|
cte (0.58548) |
|
tbr (0.308356) |
|
ldo (0.291008) |
|
sin (0.174948) |
|
lin (0.145603) |
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hlv (0.139256) |
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ssp (0.13552) |
|
sug (0.127291) |
|
eep (0.122564) |
|
cte (0.58548) |
|
tbr (0.308356) |
|
ldo (0.291008) |
|
sin (0.174948) |
|
lin (0.145603) |
|
hlv (0.139256) |
|
ssp (0.13552) |
|
sug (0.127291) |
|
eep (0.122564) |
