Non-Coding RNA Search

Ss1.1-Pig4-TMW8052N13.3

Sequence:


               
               ACCCATTTACACATCACATATATGCTCTGAGTTTTTATTTTCAAATTAAGAGATTCCACA
GATATTTTGCAAAAAGAGCTTGGATTTAAAAAGTGCTTTGTGCCAAAAATATCATACTTA
ATTCTCAGTGCTCTTCCAGAAGTTATACTGCTTATAATCTCTGTTAAAAGCAGGTTTCCT
CTCTGACAGGGTAGATGAAAGAGGAAATGTCTTAGTGCTGGGACACCTCCCAGGGGGACT
TGCTGCAGAATCTGCCGTCCATCCTCACGCGTGGCGGCCCAAGCTGGCGGGCCCTTTGGG
AGAGACCAGCACCCACAGGGCTCCCAGTCCTGCAAGGTGCGGCCTCGCCCAGTACCTTTT
GCTGCTGACAATGCAATTTTGAACTTTGAGGATTATGCTAACCATTTTTTTAAATACACA
AGAGATGATCTTTTGTCTTAACCCACACTATGGATTTTATAACACCCTGCAACTCTAAAG
CATCTTTTTGTTTACACATTTTGTATGGTGTTTTATCATTTAAAGATTTCTCTAACCTTC
AGTTTGTATAGCACTTTCTCAAGAACTCTGTCAGCACCAAATACAAAATAATTTCTTTTT
AAGAAGAGATTTTAACATGTAATTATGTGGCAGAGTATAAGTTTTGTGACTTGGGACAGT
TGCTTTCCAACTAAGATAATTAATTGCATGGACTCTGTTAAAACTGATTATCATTCATAA
TGACATATTTTTAACCCCTAGCAATGTGCCTGGGTTTTACAGGATTTTAAGATATGTAAA
AACAGCTTTTCTTTGAAGATGTGTCATGCAGTCATTTTTCATTATTTGTACTAAATGAGT
AATGTTTTCTATATTCCTTTTGTATGTTTTTTTTCTCTCTTTTTTTAAGTCTTCCGTCTG
CACCACCCTCAGCCCCTGTCCAGATTAATGTTGGGAACATGATAGAATTTTCTAGGGCAT
GTCTTAAAGTGGTCAGGAGTGAATGTTGCTTTTCATAATATTGAAATATTCTGGCATTAT
CTATTGCAAAGTAATATGAAATGTTTATTTTTGCGTCACCAGTGGTCACCACTCCCATTG
CTGGCGGTGGGGTGGGTGCTGTGGAGAACTGATCCTCACAACGGGTACCCGCTAGTGGCT
CATCTTCCCCTTTCTACTCCGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCATTTACACATCACATATATGCTCTGAGTTTTTATTTTCAAATTAAGAGATTCCACA
GATATTTTGCAAAAAGAGCTTGGATTTAAAAAGTGCTTTGTGCCAAAAATATCATACTTA
ATTCTCAGTGCTCTTCCAGAAGTTATACTGCTTATAATCTCTGTTAAAAGCAGGTTTCCT
CTCTGACAGGGTAGATGAAAGAGGAAATGTCTTAGTGCTGGGACACCTCCCAGGGGGACT
TGCTGCAGAATCTGCCGTCCATCCTCACGCGTGGCGGCCCAAGCTGGCGGGCCCTTTGGG
AGAGACCAGCACCCACAGGGCTCCCAGTCCTGCAAGGTGCGGCCTCGCCCAGTACCTTTT
GCTGCTGACAATGCAATTTTGAACTTTGAGGATTATGCTAACCATTTTTTTAAATACACA
AGAGATGATCTTTTGTCTTAACCCACACTATGGATTTTATAACACCCTGCAACTCTAAAG
CATCTTTTTGTTTACACATTTTGTATGGTGTTTTATCATTTAAAGATTTCTCTAACCTTC
AGTTTGTATAGCACTTTCTCAAGAACTCTGTCAGCACCAAATACAAAATAATTTCTTTTT
AAGAAGAGATTTTAACATGTAATTATGTGGCAGAGTATAAGTTTTGTGACTTGGGACAGT
TGCTTTCCAACTAAGATAATTAATTGCATGGACTCTGTTAAAACTGATTATCATTCATAA
TGACATATTTTTAACCCCTAGCAATGTGCCTGGGTTTTACAGGATTTTAAGATATGTAAA
AACAGCTTTTCTTTGAAGATGTGTCATGCAGTCATTTTTCATTATTTGTACTAAATGAGT
AATGTTTTCTATATTCCTTTTGTATGTTTTTTTTCTCTCTTTTTTTAAGTCTTCCGTCTG
CACCACCCTCAGCCCCTGTCCAGATTAATGTTGGGAACATGATAGAATTTTCTAGGGCAT
GTCTTAAAGTGGTCAGGAGTGAATGTTGCTTTTCATAATATTGAAATATTCTGGCATTAT
CTATTGCAAAGTAATATGAAATGTTTATTTTTGCGTCACCAGTGGTCACCACTCCCATTG
CTGGCGGTGGGGTGGGTGCTGTGGAGAACTGATCCTCACAACGGGTACCCGCTAGTGGCT
CATCTTCCCCTTTCTACTCCGGAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               3-593, gnl|bosTau2|chr23 (2223148-2222552)
               

               
               3-593, gnl|Hg17|chr6 (57162599-57161929)
               

               
               3-593, gnl|Mm7|chr1 (33963039-33963589)
               


               
               626-1159, gnl|bosTau2|chr23 (2222552-2222024)
               

               
               626-1159, gnl|Hg17|chr6 (57161929-57161344)
               

               
               626-1159, gnl|Mm7|chr1 (33963589-33964088)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-593, gnl|bosTau2|chr23 (2223148-2222552)
               

               
               3-593, gnl|Hg17|chr6 (57162599-57161929)
               

               
               3-593, gnl|Mm7|chr1 (33963039-33963589)
               


               
               626-1159, gnl|bosTau2|chr23 (2222552-2222024)
               

               
               626-1159, gnl|Hg17|chr6 (57161929-57161344)
               

               
               626-1159, gnl|Mm7|chr1 (33963589-33964088)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               gul (0.177588)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)

	3-593, gnl\|bosTau2\|chr23 (2223148-2222552)
	3-593, gnl\|Hg17\|chr6 (57162599-57161929)
	3-593, gnl\|Mm7\|chr1 (33963039-33963589)

	626-1159, gnl\|bosTau2\|chr23 (2222552-2222024)
	626-1159, gnl\|Hg17\|chr6 (57161929-57161344)
	626-1159, gnl\|Mm7\|chr1 (33963589-33964088)