Non-Coding RNA Search

Ss1.1-Pig4-TMW8052O02.5

Sequence:


               
               CTCGGGCTGCGCGCGGAGCGGGCTCGGGAGGGAAGTCCCGAGACAAAGGAGCGCCGCCGC
CGCCGCCGCCGCCGCCGCCTCGTCCGCCTCACTCGCCGGGCCGCGGCCGCCCGAGGGACT
GGAGATGTCGGGGATCGCCCTCAGCAGACTCGCCCAGGAGAGGAAGGCCTGGAGGAAAGA
CCACCCCTTTGGGTTCGTGGCTGTCCCCACAAAAAACCCCGACGGCACAATGAACCTCAT
GAACTGGGAGTGCGCCATTCCCGGGAAGAAGGGGACGCCGTGGGAGGGAGGCTTGTTTAA
ACTGCGGATGCTGTTCAAAGACGACTACCCGTCCTCACCGCCGAAATGCAAGTTCGAGCC
GCCGTTATTCCACCCGAACGTGTACCCTTCGGGCACGGTGTGCCTGTCCATCCTGGAGGA
GGACAAGGACTGGAGGCCGGCCATCACGATTAAGCAGATCTTGTTAGGAATACAGGAACT
TCTAAATGAACCAAATATCCAAGATCCAGCTCAAGCAGAGGCCTACACGATCTACTGCCA
AAACAGAGTGGAATACGAGAAAAGGGTTCGAGCACAAGCCAAGAAGTTTGCTCCCTCATA
AGCAGCGACCTTGTGGCATCATGAAAAGGAAGGGATTGGTTTGGCAAGAACTTGTTTACA
GCATTTGGCGAATCTCACGTTGCTCTCTGCAATCCTGGTCACCCGGGGAGGGTTGGGCGG
GCGCCATTGCCATTTCCGCCACGGGCACAGTCTCGACTCGCAGAATCGCCCCGTTTTTCA
TACAGGGTCTCTTCCTTCAGTCTTTTGTATTTTTGATTGTTATGTAAAACTTGCTTTTAT
TTTAATATTGATGTCAGTATTTCAACTGCTGTAAAATTATAAACTTTTATACTTGGATGA
GTCCCGAGGAGCTAGTCCCCTTTGCTCGCGGATGCAGGCATGCTTCACACCGTCTAGAGC
TGCACTTAGCCTCCAGCTGGCTGCACGACAGAAAATCAGACCTGCCCCCGCCGCCGCCGC
CCTCCCAGAGCCTGGCTTGTGTTGCTTACGAGCCTCGGATCCAGTCAGCCAGCGTCGCGT
CTCCGCATCACTTCCTTTGTGTTTATATGGCGTTTGTCTGTGTTGCTGTTTAGAGTAAAT
AAACTGTTTATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGGGCTGCGCGCGGAGCGGGCTCGGGAGGGAAGTCCCGAGACAAAGGAGCGCCGCCGC
CGCCGCCGCCGCCGCCGCCTCGTCCGCCTCACTCGCCGGGCCGCGGCCGCCCGAGGGACT
GGAGATGTCGGGGATCGCCCTCAGCAGACTCGCCCAGGAGAGGAAGGCCTGGAGGAAAGA
CCACCCCTTTGGGTTCGTGGCTGTCCCCACAAAAAACCCCGACGGCACAATGAACCTCAT
GAACTGGGAGTGCGCCATTCCCGGGAAGAAGGGGACGCCGTGGGAGGGAGGCTTGTTTAA
ACTGCGGATGCTGTTCAAAGACGACTACCCGTCCTCACCGCCGAAATGCAAGTTCGAGCC
GCCGTTATTCCACCCGAACGTGTACCCTTCGGGCACGGTGTGCCTGTCCATCCTGGAGGA
GGACAAGGACTGGAGGCCGGCCATCACGATTAAGCAGATCTTGTTAGGAATACAGGAACT
TCTAAATGAACCAAATATCCAAGATCCAGCTCAAGCAGAGGCCTACACGATCTACTGCCA
AAACAGAGTGGAATACGAGAAAAGGGTTCGAGCACAAGCCAAGAAGTTTGCTCCCTCATA
AGCAGCGACCTTGTGGCATCATGAAAAGGAAGGGATTGGTTTGGCAAGAACTTGTTTACA
GCATTTGGCGAATCTCACGTTGCTCTCTGCAATCCTGGTCACCCGGGGAGGGTTGGGCGG
GCGCCATTGCCATTTCCGCCACGGGCACAGTCTCGACTCGCAGAATCGCCCCGTTTTTCA
TACAGGGTCTCTTCCTTCAGTCTTTTGTATTTTTGATTGTTATGTAAAACTTGCTTTTAT
TTTAATATTGATGTCAGTATTTCAACTGCTGTAAAATTATAAACTTTTATACTTGGATGA
GTCCCGAGGAGCTAGTCCCCTTTGCTCGCGGATGCAGGCATGCTTCACACCGTCTAGAGC
TGCACTTAGCCTCCAGCTGGCTGCACGACAGAAAATCAGACCTGCCCCCGCCGCCGCCGC
CCTCCCAGAGCCTGGCTTGTGTTGCTTACGAGCCTCGGATCCAGTCAGCCAGCGTCGCGT
CTCCGCATCACTTCCTTTGTGTTTATATGGCGTTTGTCTGTGTTGCTGTTTAGAGTAAAT
AAACTGTTTATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|2392592|pdb|1U9B|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2392592|pdb|1U9B|

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               35-1173, gnl|bosTau2|chr6 (55932018-55930910)
               

               
               35-1173, gnl|Hg17|chr16 (1303983-1315350)
               

               
               35-1173, gnl|Mm7|chr2 (157642352-157643435)
               


               
               348-457, gnl|bosTau2|chr25 (736458-736349)
               

               
               348-457, gnl|Hg17|chr16 (1310176-1310285)
               

               
               348-457, gnl|Mm7|chr17 (23448319-23448210)
               


               
               537-1156, gnl|bosTau2|chr25 (734380-733786)
               

               
               537-1156, gnl|Hg17|chr16 (1314731-1315352)
               

               
               537-1156, gnl|Mm7|chr17 (23445583-23445007)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               35-1173, gnl|bosTau2|chr6 (55932018-55930910)
               

               
               35-1173, gnl|Hg17|chr16 (1303983-1315350)
               

               
               35-1173, gnl|Mm7|chr2 (157642352-157643435)
               


               
               348-457, gnl|bosTau2|chr25 (736458-736349)
               

               
               348-457, gnl|Hg17|chr16 (1310176-1310285)
               

               
               348-457, gnl|Mm7|chr17 (23448319-23448210)
               


               
               537-1156, gnl|bosTau2|chr25 (734380-733786)
               

               
               537-1156, gnl|Hg17|chr16 (1314731-1315352)
               

               
               537-1156, gnl|Mm7|chr17 (23445583-23445007)

Expressed library(ies): 44 entry(ies)

More info

Expressed library(ies): 44 entry(ies)

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               fce (0.543183)
               

               
               fhi (0.508733)
               

               
               ece (0.45861)
               

               
               cly (0.361925)
               

               
               pgl (0.35545)
               

               
               ill (0.351185)
               

               
               mcp (0.341297)
               

               
               nje (0.33184)
               

               
               cag (0.302389)
               

               
               ldo (0.291008)
               

               
               nmm (0.265604)
               

               
               cov (0.264306)
               

               
               ese (0.253004)
               

               
               eru (0.240096)
               

               
               med (0.232504)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               nbm (0.198649)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               cbr (0.127975)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 44 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               fhi (0.508733)
               

               
               ece (0.45861)
               

               
               cly (0.361925)
               

               
               pgl (0.35545)
               

               
               ill (0.351185)
               

               
               mcp (0.341297)
               

               
               nje (0.33184)
               

               
               cag (0.302389)
               

               
               ldo (0.291008)
               

               
               nmm (0.265604)
               

               
               cov (0.264306)
               

               
               ese (0.253004)
               

               
               eru (0.240096)
               

               
               med (0.232504)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               nbm (0.198649)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               cbr (0.127975)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	35-1173, gnl\|bosTau2\|chr6 (55932018-55930910)
	35-1173, gnl\|Hg17\|chr16 (1303983-1315350)
	35-1173, gnl\|Mm7\|chr2 (157642352-157643435)

	348-457, gnl\|bosTau2\|chr25 (736458-736349)
	348-457, gnl\|Hg17\|chr16 (1310176-1310285)
	348-457, gnl\|Mm7\|chr17 (23448319-23448210)

	537-1156, gnl\|bosTau2\|chr25 (734380-733786)
	537-1156, gnl\|Hg17\|chr16 (1314731-1315352)
	537-1156, gnl\|Mm7\|chr17 (23445583-23445007)

	fce (0.543183)
	fhi (0.508733)
	ece (0.45861)
	cly (0.361925)
	pgl (0.35545)
	ill (0.351185)
	mcp (0.341297)
	nje (0.33184)
	cag (0.302389)
	ldo (0.291008)
	nmm (0.265604)
	cov (0.264306)
	ese (0.253004)
	eru (0.240096)
	med (0.232504)
	ecc (0.23007)
	nms (0.213858)
	cty (0.20816)
	nbm (0.198649)
	eje (0.197668)
	aor (0.195274)
	nlu (0.191681)
	duo (0.172801)
	eye (0.170503)
	cki (0.165235)
	nco (0.161734)
	mga (0.160205)
	fco (0.157208)
	lin (0.145603)
	spl (0.143184)
	hyp (0.142837)
	cst (0.140036)
	ssp (0.13552)
	pla (0.133672)
	lyg (0.133103)
	ute (0.132784)
	cbr (0.127975)
	thg (0.126791)
	bla (0.124347)
	eep (0.122564)
	ebs (0.118301)
	jca (0.11396)
	spc (0.113366)
	jej (0.0989218)