Non-Coding RNA Search

Ss1.1-Pig4-TMW8052O05.5

Sequence:


               
               AGCTGCCCATGGCAGCAAACCCAATGTGTACGCCACCCGGGACTCGGCTGAGGATGTGGC
CGTGCAGGTGGAGGCGCAGGACGCAGTGATGGGGCAGGACCTGACGGTCTGTGTGGTGCT
GACCAACCGAGGTGGCAGCCGTCGCACTGTGAAGCTGCACCTCTACCTCTCCGTTACCTT
CTACACTGGTGTCACTGGGTCCGTCTTTAAGGAGAGCAAGAAGGAAGTAGTGCTGGAGCC
AGGGGCCTCGGAGCGGGTGACTATGCCCGTGGCCTACAAGGAGTACCAGCCCCACCTCGT
GGACCAGGGGGCCATGCTGCTCAACGTCTCGGGCCACGTCAAGGAGAACGGGCAGGTGCT
GGCCAAGCAGCACACCTTCCGTCTGCGCACCCCGGACCTCTCCCTCACGTTATTGGGAGC
AGCTGTGGTTGGCCAGGAGTGCGAAGTACAGATCGTCTTCAAGAACCCCCTGCCTGTCAC
CCTCACCAACGTCGTCTTCCGGCTGGAGGGCTCCGGGCTGCAGAGACCCAAGATCCTCAA
CGTTGGGGACATTGGGGGCAACGAGACAGTGACACTGCGCCAGACGTTTGTGCCTGTGAG
ACCAGGCCCCCGCCAGCTCATCGCCAGCTTGGACAGCCCACAGCTCTCCCAGGTGCATGG
TGTCATCCAGGTGGATGTGGCCCCAGCCGCTGGAGGTGGGGTCTTCTCAGATGCCAGAGG
CAACAGTCGCTCAGGAGAGACCATCCCTATGGCATCTCGAGGTGAGGCTTAGCCCTCCAC
CAGGACCAACGGGACTGGAGTCAGATGAGCAAGGACTCTGCCTTAAGACAGGGGCCCACT
GCAGAGCAGCTCCCCCCGGACGCAGGTGGGGAGACCGGGGCACCTGGGGAGGAGCCAATC
CCACGTGCACGGATGCTAATAAACTGTTTTTTAATGAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTGCCCATGGCAGCAAACCCAATGTGTACGCCACCCGGGACTCGGCTGAGGATGTGGC
CGTGCAGGTGGAGGCGCAGGACGCAGTGATGGGGCAGGACCTGACGGTCTGTGTGGTGCT
GACCAACCGAGGTGGCAGCCGTCGCACTGTGAAGCTGCACCTCTACCTCTCCGTTACCTT
CTACACTGGTGTCACTGGGTCCGTCTTTAAGGAGAGCAAGAAGGAAGTAGTGCTGGAGCC
AGGGGCCTCGGAGCGGGTGACTATGCCCGTGGCCTACAAGGAGTACCAGCCCCACCTCGT
GGACCAGGGGGCCATGCTGCTCAACGTCTCGGGCCACGTCAAGGAGAACGGGCAGGTGCT
GGCCAAGCAGCACACCTTCCGTCTGCGCACCCCGGACCTCTCCCTCACGTTATTGGGAGC
AGCTGTGGTTGGCCAGGAGTGCGAAGTACAGATCGTCTTCAAGAACCCCCTGCCTGTCAC
CCTCACCAACGTCGTCTTCCGGCTGGAGGGCTCCGGGCTGCAGAGACCCAAGATCCTCAA
CGTTGGGGACATTGGGGGCAACGAGACAGTGACACTGCGCCAGACGTTTGTGCCTGTGAG
ACCAGGCCCCCGCCAGCTCATCGCCAGCTTGGACAGCCCACAGCTCTCCCAGGTGCATGG
TGTCATCCAGGTGGATGTGGCCCCAGCCGCTGGAGGTGGGGTCTTCTCAGATGCCAGAGG
CAACAGTCGCTCAGGAGAGACCATCCCTATGGCATCTCGAGGTGAGGCTTAGCCCTCCAC
CAGGACCAACGGGACTGGAGTCAGATGAGCAAGGACTCTGCCTTAAGACAGGGGCCCACT
GCAGAGCAGCTCCCCCCGGACGCAGGTGGGGAGACCGGGGCACCTGGGGAGGAGCCAATC
CCACGTGCACGGATGCTAATAAACTGTTTTTTAATGAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|510525|emb|CAA41040.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|510525|emb|CAA41040.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               665-781, + strand, RNAz p=0.612053

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               665-781, + strand, RNAz p=0.612053

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_000359, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_000359, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               2-248, gnl|bosTau2|chr10 (12241220-12241466)
               

               
               2-248, gnl|Hg17|chr14 (23794264-23794018)
               

               
               2-248, gnl|Mm7|chr14 (50573057-50572811)
               


               
               249-436, gnl|bosTau2|chr10 (12241597-12241784)
               

               
               249-436, gnl|Hg17|chr14 (23793870-23793672)
               

               
               249-436, gnl|Mm7|chr14 (50572321-50572128)
               


               
               546-917, gnl|bosTau2|chr10 (12247062-12247431)
               

               
               546-917, gnl|Hg17|chr14 (23788588-23788194)
               

               
               546-917, gnl|Mm7|chr14 (50567782-50567418)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-248, gnl|bosTau2|chr10 (12241220-12241466)
               

               
               2-248, gnl|Hg17|chr14 (23794264-23794018)
               

               
               2-248, gnl|Mm7|chr14 (50573057-50572811)
               


               
               249-436, gnl|bosTau2|chr10 (12241597-12241784)
               

               
               249-436, gnl|Hg17|chr14 (23793870-23793672)
               

               
               249-436, gnl|Mm7|chr14 (50572321-50572128)
               


               
               546-917, gnl|bosTau2|chr10 (12247062-12247431)
               

               
               546-917, gnl|Hg17|chr14 (23788588-23788194)
               

               
               546-917, gnl|Mm7|chr14 (50567782-50567418)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ton (0.526501)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               clu (0.119646)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.526501)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               clu (0.119646)

	2-248, gnl\|bosTau2\|chr10 (12241220-12241466)
	2-248, gnl\|Hg17\|chr14 (23794264-23794018)
	2-248, gnl\|Mm7\|chr14 (50573057-50572811)

	249-436, gnl\|bosTau2\|chr10 (12241597-12241784)
	249-436, gnl\|Hg17\|chr14 (23793870-23793672)
	249-436, gnl\|Mm7\|chr14 (50572321-50572128)

	546-917, gnl\|bosTau2\|chr10 (12247062-12247431)
	546-917, gnl\|Hg17\|chr14 (23788588-23788194)
	546-917, gnl\|Mm7\|chr14 (50567782-50567418)