Ss1.1-Pig4-TMW8052O06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGTTGCTTCTACAGTGGCTGTGGCATATAGAGGTTCCCAGGCTAGGGATCCCATTGGAGC TGTAGCTGCTGGCCTATGCCACAGCCACAGCAACATGGGATCTGGGCTGCGCCCGCGACC CACACCACAGCTCATGGCAGCTCGGGATCCTTAACCCACTGAGCGAGGCCACAGATCGAA CCCATGTCCTCACCAGTGCTAGTCGGGTTCGTTCAACTGCTGAGCCACCTGACAGGAATT CCACGAACCTTAAATAAGTTCCTTAATAATCTAAACCTGCAGCACCAATGTCGATTTAGG GACTATTGAGATTAATGGAGTTAGTTGCAGTTTACCAGATCAGATACATGAAAATATCCT GTCTCAACTTAAATATTTCCATCCTGTTAATGTAATTAACACCAAGAATGGTCTGCCTCA TCTGATAATCCCTTGGTGGGAACCACATGTGATTCCTACCTCGTTGAACAATATTTCATA AATTTGACAGTGTACCATCCCATTGTCCACCCTGTGATTTTTTTTCCAAGTTCATGCTTA GTCAATGTTTTGCAACATTGTGATTGTATGTTGACTATATTGTTTTTAGAATGCTCTTTC TCATAAAGCAAGGAAATAAATTTATTTGAAATGACAATTTTACTCAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGTTGCTTCTACAGTGGCTGTGGCATATAGAGGTTCCCAGGCTAGGGATCCCATTGGAGC TGTAGCTGCTGGCCTATGCCACAGCCACAGCAACATGGGATCTGGGCTGCGCCCGCGACC CACACCACAGCTCATGGCAGCTCGGGATCCTTAACCCACTGAGCGAGGCCACAGATCGAA CCCATGTCCTCACCAGTGCTAGTCGGGTTCGTTCAACTGCTGAGCCACCTGACAGGAATT CCACGAACCTTAAATAAGTTCCTTAATAATCTAAACCTGCAGCACCAATGTCGATTTAGG GACTATTGAGATTAATGGAGTTAGTTGCAGTTTACCAGATCAGATACATGAAAATATCCT GTCTCAACTTAAATATTTCCATCCTGTTAATGTAATTAACACCAAGAATGGTCTGCCTCA TCTGATAATCCCTTGGTGGGAACCACATGTGATTCCTACCTCGTTGAACAATATTTCATA AATTTGACAGTGTACCATCCCATTGTCCACCCTGTGATTTTTTTTCCAAGTTCATGCTTA GTCAATGTTTTGCAACATTGTGATTGTATGTTGACTATATTGTTTTTAGAATGCTCTTTC TCATAAAGCAAGGAAATAAATTTATTTGAAATGACAATTTTACTCAGA |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 321-531, - strand, RNAz p=0.965971 | |
| 343-455, - strand, RNAz p=0.604385 | |
| 361-478, - strand, RNAz p=0.885356 | |
| 396-505, - strand, RNAz p=0.802756 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 321-531, - strand, RNAz p=0.965971 | |
| 343-455, - strand, RNAz p=0.604385 | |
| 361-478, - strand, RNAz p=0.885356 | |
| 396-505, - strand, RNAz p=0.802756 |
| Similar Transcript(s): 1 entry(ies) | More info |
| Similar Transcript(s): 1 entry(ies) | Help | Less info |
| 352-517, BP459958 full-length enriched swine cDNA library, adult ovary Sus (dbj|BP459958.1|), blast E-value=0, identity=100% |
| Similar Transcript(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 352-517, BP459958 full-length enriched swine cDNA library, adult ovary Sus (dbj|BP459958.1|), blast E-value=0, identity=100% |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 242-648, gnl|bosTau2|chr28 (16638242-16637833) | |
| 242-648, gnl|canFam2|chr4 (23098496-23098806) | |
| 242-648, gnl|canFam2|chr4 (23098499-23098768) | |
| 242-648, gnl|canFam2|chr4 (23098382-23098768) | |
| 242-648, gnl|dasNov1|scaffold_33188 (7605-7905) | |
| 242-648, gnl|dasNov1|scaffold_33188 (7612-7883) | |
| 242-648, gnl|dasNov1|scaffold_33188 (7487-7883) | |
| 242-648, gnl|echTel1|scaffold_184050 (3934-3631) | |
| 242-648, gnl|echTel1|scaffold_184050 (3927-3669) | |
| 242-648, gnl|echTel1|scaffold_184050 (4013-3669) | |
| 242-648, gnl|hg17|chr1 (240885806-240886117) | |
| 242-648, gnl|hg17|chr10 (70123825-70124212) | |
| 242-648, gnl|Hg17|chr10 (70123852-70124247) | |
| 242-648, gnl|hg17|chr3 (52035985-52036251) | |
| 242-648, gnl|loxAfr1|scaffold_2417 (58232-58546) | |
| 242-648, gnl|loxAfr1|scaffold_2417 (58232-58507) | |
| 242-648, gnl|loxAfr1|scaffold_2417 (57967-58507) | |
| 242-648, gnl|mm7|chr10 (62329175-62328939) | |
| 242-648, gnl|mm7|chr10 (62329168-62328949) | |
| 242-648, gnl|mm7|chr10 (62329290-62328949) | |
| 242-648, gnl|oryCun1|scaffold_172871 (53780-53414) | |
| 242-648, gnl|oryCun1|scaffold_205599 (87499-87772) | |
| 242-648, gnl|oryCun1|scaffold_205599 (87494-87743) | |
| 242-648, gnl|panTro1|chr1 (224905814-224906125) | |
| 242-648, gnl|panTro1|chr2 (53645825-53646091) | |
| 242-648, gnl|panTro1|chr8 (71220831-71221218) | |
| 242-648, gnl|rheMac2|chr1 (212686770-212686449) | |
| 242-648, gnl|rheMac2|chr9 (68545752-68545489) | |
| 242-648, gnl|rheMac2|chr9 (68545871-68545489) | |
| 242-648, gnl|rn3|chr20 (25143376-25143018) | |
| 242-648, gnl|rn3|chr20 (25143368-25143070) | |
| 242-648, gnl|rn3|chr20 (25143479-25143070) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 242-648, gnl|bosTau2|chr28 (16638242-16637833) | |
| 242-648, gnl|canFam2|chr4 (23098496-23098806) | |
| 242-648, gnl|canFam2|chr4 (23098499-23098768) | |
| 242-648, gnl|canFam2|chr4 (23098382-23098768) | |
| 242-648, gnl|dasNov1|scaffold_33188 (7605-7905) | |
| 242-648, gnl|dasNov1|scaffold_33188 (7612-7883) | |
| 242-648, gnl|dasNov1|scaffold_33188 (7487-7883) | |
| 242-648, gnl|echTel1|scaffold_184050 (3934-3631) | |
| 242-648, gnl|echTel1|scaffold_184050 (3927-3669) | |
| 242-648, gnl|echTel1|scaffold_184050 (4013-3669) | |
| 242-648, gnl|hg17|chr1 (240885806-240886117) | |
| 242-648, gnl|hg17|chr10 (70123825-70124212) | |
| 242-648, gnl|Hg17|chr10 (70123852-70124247) | |
| 242-648, gnl|hg17|chr3 (52035985-52036251) | |
| 242-648, gnl|loxAfr1|scaffold_2417 (58232-58546) | |
| 242-648, gnl|loxAfr1|scaffold_2417 (58232-58507) | |
| 242-648, gnl|loxAfr1|scaffold_2417 (57967-58507) | |
| 242-648, gnl|mm7|chr10 (62329175-62328939) | |
| 242-648, gnl|mm7|chr10 (62329168-62328949) | |
| 242-648, gnl|mm7|chr10 (62329290-62328949) | |
| 242-648, gnl|oryCun1|scaffold_172871 (53780-53414) | |
| 242-648, gnl|oryCun1|scaffold_205599 (87499-87772) | |
| 242-648, gnl|oryCun1|scaffold_205599 (87494-87743) | |
| 242-648, gnl|panTro1|chr1 (224905814-224906125) | |
| 242-648, gnl|panTro1|chr2 (53645825-53646091) | |
| 242-648, gnl|panTro1|chr8 (71220831-71221218) | |
| 242-648, gnl|rheMac2|chr1 (212686770-212686449) | |
| 242-648, gnl|rheMac2|chr9 (68545752-68545489) | |
| 242-648, gnl|rheMac2|chr9 (68545871-68545489) | |
| 242-648, gnl|rn3|chr20 (25143376-25143018) | |
| 242-648, gnl|rn3|chr20 (25143368-25143070) | |
| 242-648, gnl|rn3|chr20 (25143479-25143070) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bla (0.124347) | |
| eru (0.120048) |