Non-Coding RNA Search

Ss1.1-Pig4-TMW8052O12.5

Sequence:


               
               TTTTTTTTTTTTTTTTTACTTTTCTTTTTTTATTTTAGATTCAGAAAATTCAGCCCAGGT
GTCCAAACAACGGTTCCATAGAAAACACACACACACATACACATGTCCTCTTTCTGGTAA
GGTGCTGTGTTGGGAGCTCGCAGGGTCTCTGCTCCTCCCAGGTGCCCCAGCGCCCCCGGG
GTAGGGAGGGAGGGCCAGCAGGTCAGGACTCTGCACCCTAAAGGCAGAGGCGCTCAGTAC
TTGCGCTGCCTGGGGAAGAGGCTACTTCCCGAGGCCCGCAGCGCGGGGCTGGGGGGGCTG
GCGTCCTCTGCGTCCAGGCTGAAGAGGTCCCTGCCGGTCCGGAGGATCTGCTCCTCCAGC
TTCTTGTGTCGCTTCATGTCCGAGAGGACCTTGTCCAGGCGGGCCTCCCGTTTCTGGCTC
CGGGCTGAGCTTCCTGGGGTGCGCCTCCGGTCAATCAGGGAGTCCTTTGGTGTCATTGGC
TCATCATCAAAATCAAATTCTGTGGGCATGTGCGGCTTTTCCTCTTCCTCCTCTTTGGCC
TCGGGTTCCTCATCAGATCTTTCCTCTTCACTCTGGGCCTCAGGCGTAGGTGGTCGGCGG
GGCAGGATCTCTGCCTGAAGCTCCAGGGTACCGTGGGCAGCCAGCAGTTCATAGAGCCGT
TGGATTTCGGAGGGAGGTGGCATCCAGGGCTGCCCATCCTCAGGCAGCTCCACCTCTTCA
TCGCTGCAGGGCACGCACCAGTCCTCGGAGTCTCCCTGGGCGGGCTCTTCCCCCTCAGTG
CTGGGGGCTTCTCCCTGCACTTCCTCGGCCCTGGACCCCTCATGTTCGGCCTCCTCCCGG
CCTCCTTCCCCCTCTTCCTCGGCTTTATCGGCCGAAGCAGAGGGGCCTCCGGTGTCCTCC
ACGGCCAGAGCCTGGAGGCCGGAGGTCACTTCCCCTTCTTCAGACAGAGGCGCCGCCGCG
GTGGCTGCCGTGTCTCCATGACCCCGGACAAGGGACATAAGCCGCTAGGGAAGGGGCCCA
GCGATGCCAGGAGATGCAGGAGTACCAAGCCGGGGATTCCCCCCGCGCCCCCTCCCTCCC
TCCACTCCCTCCCAAAAAAAGGGATCACCCCGGGGTTCGGGGACTGTTTCGCTAACCAAT
CAGGCTCCAACAGCGGTCTCGCGACCAGACCACCGGTTCCCAGGAGGGGGCGCTCAGTCC
CCTCCAAGGACCCCGCCCCCCACAGATCGAGATCCGGTACTCCGAGGTTTCCAGCGAGCG
GCAGAAACCACTTTCCGGGCCGGAGACGGGCGGACCCGCTCTTCTCGCCTCCGCACTACG
CCGCTCTACACCTGGATGCGGCGTCCTCTCCCCACACCTCGAAGGTCCCCCACCTCAGCG
GCCGTACGCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTACTTTTCTTTTTTTATTTTAGATTCAGAAAATTCAGCCCAGGT
GTCCAAACAACGGTTCCATAGAAAACACACACACACATACACATGTCCTCTTTCTGGTAA
GGTGCTGTGTTGGGAGCTCGCAGGGTCTCTGCTCCTCCCAGGTGCCCCAGCGCCCCCGGG
GTAGGGAGGGAGGGCCAGCAGGTCAGGACTCTGCACCCTAAAGGCAGAGGCGCTCAGTAC
TTGCGCTGCCTGGGGAAGAGGCTACTTCCCGAGGCCCGCAGCGCGGGGCTGGGGGGGCTG
GCGTCCTCTGCGTCCAGGCTGAAGAGGTCCCTGCCGGTCCGGAGGATCTGCTCCTCCAGC
TTCTTGTGTCGCTTCATGTCCGAGAGGACCTTGTCCAGGCGGGCCTCCCGTTTCTGGCTC
CGGGCTGAGCTTCCTGGGGTGCGCCTCCGGTCAATCAGGGAGTCCTTTGGTGTCATTGGC
TCATCATCAAAATCAAATTCTGTGGGCATGTGCGGCTTTTCCTCTTCCTCCTCTTTGGCC
TCGGGTTCCTCATCAGATCTTTCCTCTTCACTCTGGGCCTCAGGCGTAGGTGGTCGGCGG
GGCAGGATCTCTGCCTGAAGCTCCAGGGTACCGTGGGCAGCCAGCAGTTCATAGAGCCGT
TGGATTTCGGAGGGAGGTGGCATCCAGGGCTGCCCATCCTCAGGCAGCTCCACCTCTTCA
TCGCTGCAGGGCACGCACCAGTCCTCGGAGTCTCCCTGGGCGGGCTCTTCCCCCTCAGTG
CTGGGGGCTTCTCCCTGCACTTCCTCGGCCCTGGACCCCTCATGTTCGGCCTCCTCCCGG
CCTCCTTCCCCCTCTTCCTCGGCTTTATCGGCCGAAGCAGAGGGGCCTCCGGTGTCCTCC
ACGGCCAGAGCCTGGAGGCCGGAGGTCACTTCCCCTTCTTCAGACAGAGGCGCCGCCGCG
GTGGCTGCCGTGTCTCCATGACCCCGGACAAGGGACATAAGCCGCTAGGGAAGGGGCCCA
GCGATGCCAGGAGATGCAGGAGTACCAAGCCGGGGATTCCCCCCGCGCCCCCTCCCTCCC
TCCACTCCCTCCCAAAAAAAGGGATCACCCCGGGGTTCGGGGACTGTTTCGCTAACCAAT
CAGGCTCCAACAGCGGTCTCGCGACCAGACCACCGGTTCCCAGGAGGGGGCGCTCAGTCC
CCTCCAAGGACCCCGCCCCCCACAGATCGAGATCCGGTACTCCGAGGTTTCCAGCGAGCG
GCAGAAACCACTTTCCGGGCCGGAGACGGGCGGACCCGCTCTTCTCGCCTCCGCACTACG
CCGCTCTACACCTGGATGCGGCGTCCTCTCCCCACACCTCGAAGGTCCCCCACCTCAGCG
GCCGTACGCACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9BTK6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BTK6_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               795-994, - strand, RNAz p=0.997299

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               795-994, - strand, RNAz p=0.997299

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_024516, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_024516, -

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               25-436, gnl|bosTau2|chr25 (24550746-24550353)
               

               
               25-436, gnl|Hg17|chr16 (29738916-29738374)
               

               
               25-436, gnl|Mm7|chr7 (123111632-123112029)
               


               
               516-1392, gnl|bosTau2|chr25 (24547993-24547135)
               

               
               516-1392, gnl|Hg17|chr16 (29735830-29734975)
               

               
               516-1392, gnl|Mm7|chr7 (123113000-123113835)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-436, gnl|bosTau2|chr25 (24550746-24550353)
               

               
               25-436, gnl|Hg17|chr16 (29738916-29738374)
               

               
               25-436, gnl|Mm7|chr7 (123111632-123112029)
               


               
               516-1392, gnl|bosTau2|chr25 (24547993-24547135)
               

               
               516-1392, gnl|Hg17|chr16 (29735830-29734975)
               

               
               516-1392, gnl|Mm7|chr7 (123113000-123113835)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fce (0.271592)
               

               
               nms (0.213858)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               nms (0.213858)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               eje (0.0988338)

	25-436, gnl\|bosTau2\|chr25 (24550746-24550353)
	25-436, gnl\|Hg17\|chr16 (29738916-29738374)
	25-436, gnl\|Mm7\|chr7 (123111632-123112029)

	516-1392, gnl\|bosTau2\|chr25 (24547993-24547135)
	516-1392, gnl\|Hg17\|chr16 (29735830-29734975)
	516-1392, gnl\|Mm7\|chr7 (123113000-123113835)

	fce (0.271592)
	nms (0.213858)
	fbs (0.175346)
	fhi (0.169578)
	eli (0.151814)
	hyp (0.142837)
	lnt (0.142308)
	eje (0.0988338)