Ss1.1-Pig4-TMW8052O13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACAACATGGCGGCAGAAAGCGGCAGCGATTCACAGCTGAGCAAGAGAAGGCGCCGGGTC CCGGAGGAACCAGAAAAAACGGAACTCAGCGAAAGAGAGCTGGCAGTGGCAGTGGCAGTG ACCCAAGAAAATGAAGAGGAAAGTGAAGAACGCTGGGTTGGGCCTTTACCTGTAGAGGCA ACATTGGCCAAGAAGAGGAAAGTTCTAGAGTTTGAAAGAGTCTATCTTGATAATCTTCCC AGTGCTTCCATGTATGAACGCAGTTACATGCACAGAGATGTCATCACCCATGTTGTGTGC ACCAAAACAGACTTTATCATTACTGCCAGTCATGATGGACATGTTAAATTCTGGAAAAAA ATAGAAGAGGGAATTGAATTTGTTAAACATTTTCGTAGTCACCTAGGAATTATTGAGAGT ATTGCAGTTAGCTCTGAGGGAGCATTATTCTGTTCTGTGGGTGATGATAAAGCAATGAAG GTGTTTGATGTAGTGAACTTTGACATGATCAATATGCTGAAGCTTGGCTATTTTCCTGGA CAGTGTGAGTGGATCTATTGCCCAGGAGATGCCATATCTTCAGTTGCTGCTTCTGAGAAG AGTACAGGAAAAATTTTCATTTATGATGGTCGAGGAGATAATCAGCCGCTACATATTTTT GATAAACTCCATACATCACCTCTCACTCAGATACGGCTAAACCCAATTTACAAAGCAGTT GTGTCTTCTGACAAATCTGGAATGATTGAATACTGGACCGGTCCTCCTCATGAATATAAA TTCCCCAAAAATGTGAACTGGGAATATAAAACTGACACAGATTTATATGAATTTGCCAAG TGCAAGGCTTATCCAACCAGCATATGTTTTTCACCTGATGGGAAGAAAATTGCTACTATT GGTTCTGATAGAAAAGTTAGAATTTTCAGATTTTTAACTGGAAAACTCATGAGGGTCTTT GATGAATCACTAAGTATGTTTACTGAACTGCAGCAGATGAGGCAACAACTACCAGACATG GAATTTGGCCGACGAATGGCTGTAGAACGTGAATTGGAGAAGGTGGATGCAGTAAGATTA ATTAATATAGTTTTTGATGAAACTGGACACTTTGTGCTATATGGAACAATGCTGGGCATT AAAGTTATAAATGTTGAAACAAACCGGTGTGTGCGGATCTTAGGCAAGCAAGAAAATATT AGAGTAATGCAACTGGCTTTGTTCCAGGGAATAGCCAAAAAACATCGTGCTGCAACTACT ATAGAAATGAAAGCTTCTGAAAACCCTGTTCTTCAGAATATTCAAGCTGACCCAACAGTA GTCTGTACATCTTCACTTTTTATTTTCCTCCTTGAGTTTACTAAACGAGAACCTGAAGAT ACAAAAAGTGCAGATTCTGACCGAGATGTTTTTAATGAGAGGCCTTCTAAAGAAGAAGTC ATGGCAGCTACTCAAGCTGAGGGACCTAAACGAGTGTCAGATAGTGCTATTATCCACACA AGCATGGGAGACATTCACATCAAACTCTTTCCTGTTGAGTGCCCTAAGACAGTGGAAAAC TTCTGTGTTCACAGTAGAAATGGTTATTATAATGGACATACATTTCACCGCATAATTAAG GGCTTCATGATTCAGACAGGAGATCCAACAGGTACTGGTATGGGAGGAGAAAGCATATGG GGAGGAGAATTTGAAGATGAATTTCACTCAACATTACGACATGACAGACCATATACACTC AGCATGGCCAATGCTGGATCAAATACTAATGGATCCCAGTTTTTTATAACAGTAGTACCA ACGCCTTGGCTTGATAATAAGCACACAGTATTTGGACGAGTGACCAAAGGAATGGAAGTT GTGCAAAGAATTTCCAATGTGAAAGTCAATCCCAAAACAGATAAGCCATATGAAGATGTC AGCATCATAAATATTACTGTCAAGTAAAATGAGATTTTTCTCATTGTATGTGTAAAAAAT ACACATATATTAAACACAGGATTATTTTACATAAAGAAGCTCTTAAGATTTGCTTAACAC ATAAATCATGTTTCAAGGATTCAGTATTTTTATATTTTTCATTAAAGGCTATATTATTTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACAACATGGCGGCAGAAAGCGGCAGCGATTCACAGCTGAGCAAGAGAAGGCGCCGGGTC CCGGAGGAACCAGAAAAAACGGAACTCAGCGAAAGAGAGCTGGCAGTGGCAGTGGCAGTG ACCCAAGAAAATGAAGAGGAAAGTGAAGAACGCTGGGTTGGGCCTTTACCTGTAGAGGCA ACATTGGCCAAGAAGAGGAAAGTTCTAGAGTTTGAAAGAGTCTATCTTGATAATCTTCCC AGTGCTTCCATGTATGAACGCAGTTACATGCACAGAGATGTCATCACCCATGTTGTGTGC ACCAAAACAGACTTTATCATTACTGCCAGTCATGATGGACATGTTAAATTCTGGAAAAAA ATAGAAGAGGGAATTGAATTTGTTAAACATTTTCGTAGTCACCTAGGAATTATTGAGAGT ATTGCAGTTAGCTCTGAGGGAGCATTATTCTGTTCTGTGGGTGATGATAAAGCAATGAAG GTGTTTGATGTAGTGAACTTTGACATGATCAATATGCTGAAGCTTGGCTATTTTCCTGGA CAGTGTGAGTGGATCTATTGCCCAGGAGATGCCATATCTTCAGTTGCTGCTTCTGAGAAG AGTACAGGAAAAATTTTCATTTATGATGGTCGAGGAGATAATCAGCCGCTACATATTTTT GATAAACTCCATACATCACCTCTCACTCAGATACGGCTAAACCCAATTTACAAAGCAGTT GTGTCTTCTGACAAATCTGGAATGATTGAATACTGGACCGGTCCTCCTCATGAATATAAA TTCCCCAAAAATGTGAACTGGGAATATAAAACTGACACAGATTTATATGAATTTGCCAAG TGCAAGGCTTATCCAACCAGCATATGTTTTTCACCTGATGGGAAGAAAATTGCTACTATT GGTTCTGATAGAAAAGTTAGAATTTTCAGATTTTTAACTGGAAAACTCATGAGGGTCTTT GATGAATCACTAAGTATGTTTACTGAACTGCAGCAGATGAGGCAACAACTACCAGACATG GAATTTGGCCGACGAATGGCTGTAGAACGTGAATTGGAGAAGGTGGATGCAGTAAGATTA ATTAATATAGTTTTTGATGAAACTGGACACTTTGTGCTATATGGAACAATGCTGGGCATT AAAGTTATAAATGTTGAAACAAACCGGTGTGTGCGGATCTTAGGCAAGCAAGAAAATATT AGAGTAATGCAACTGGCTTTGTTCCAGGGAATAGCCAAAAAACATCGTGCTGCAACTACT ATAGAAATGAAAGCTTCTGAAAACCCTGTTCTTCAGAATATTCAAGCTGACCCAACAGTA GTCTGTACATCTTCACTTTTTATTTTCCTCCTTGAGTTTACTAAACGAGAACCTGAAGAT ACAAAAAGTGCAGATTCTGACCGAGATGTTTTTAATGAGAGGCCTTCTAAAGAAGAAGTC ATGGCAGCTACTCAAGCTGAGGGACCTAAACGAGTGTCAGATAGTGCTATTATCCACACA AGCATGGGAGACATTCACATCAAACTCTTTCCTGTTGAGTGCCCTAAGACAGTGGAAAAC TTCTGTGTTCACAGTAGAAATGGTTATTATAATGGACATACATTTCACCGCATAATTAAG GGCTTCATGATTCAGACAGGAGATCCAACAGGTACTGGTATGGGAGGAGAAAGCATATGG GGAGGAGAATTTGAAGATGAATTTCACTCAACATTACGACATGACAGACCATATACACTC AGCATGGCCAATGCTGGATCAAATACTAATGGATCCCAGTTTTTTATAACAGTAGTACCA ACGCCTTGGCTTGATAATAAGCACACAGTATTTGGACGAGTGACCAAAGGAATGGAAGTT GTGCAAAGAATTTCCAATGTGAAAGTCAATCCCAAAACAGATAAGCCATATGAAGATGTC AGCATCATAAATATTACTGTCAAGTAAAATGAGATTTTTCTCATTGTATGTGTAAAAAAT ACACATATATTAAACACAGGATTATTTTACATAAAGAAGCTCTTAAGATTTGCTTAACAC ATAAATCATGTTTCAAGGATTCAGTATTTTTATATTTTTCATTAAAGGCTATATTATTTA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 80 entry(ies) | More info |
| Aligned organism(s): 80 entry(ies) | Help | Less info |
| 1-202, gnl|bosTau2|chr20 (8868241-8868046) | |
| 1-202, gnl|Hg17|chr5 (64894888-64895089) | |
| 1-202, gnl|Mm7|chr13 (101366516-101366315) | |
| 307-407, gnl|bosTau2|chr20 (8862978-8862878) | |
| 307-407, gnl|canFam2|chr2 (54175752-54175885) | |
| 307-407, gnl|danRer3|chr2 (46270227-46270368) | |
| 307-407, gnl|dasNov1|scaffold_22876 (10333-10200) | |
| 307-407, gnl|echTel1|scaffold_312914 (44464-44597) | |
| 307-407, gnl|fr1|chrUn (36050481-36050607) | |
| 307-407, gnl|galGal2|chrZ (3853107-3853231) | |
| 307-407, gnl|hg17|chr5 (64901191-64901324) | |
| 307-407, gnl|Hg17|chr5 (64901216-64901316) | |
| 307-407, gnl|mm7|chr13 (101360928-101360794) | |
| 307-407, gnl|Mm7|chr13 (101360900-101360800) | |
| 307-407, gnl|monDom2|scaffold_27 (30789807-30789942) | |
| 307-407, gnl|panTro1|chr4 (51032115-51031982) | |
| 307-407, gnl|rheMac2|chr6 (63445608-63445741) | |
| 307-407, gnl|rn3|chr2 (35074138-35074004) | |
| 307-407, gnl|tetNig1|chrUn_random (1441527-1441641) | |
| 307-407, gnl|xenTro1|scaffold_597 (295355-295224) | |
| 524-975, gnl|bosTau2|chr20 (8859427-8858976) | |
| 524-975, gnl|Hg17|chr5 (64903418-64903869) | |
| 524-975, gnl|Mm7|chr13 (101358197-101357746) | |
| 976-1168, gnl|bosTau2|chr20 (8854947-8854754) | |
| 976-1168, gnl|canFam2|chr2 (54183322-54183547) | |
| 976-1168, gnl|danRer3|chr2 (46296029-46296274) | |
| 976-1168, gnl|dasNov1|scaffold_22876 (6439-6202) | |
| 976-1168, gnl|fr1|chrUn (36051476-36051712) | |
| 976-1168, gnl|galGal2|chrZ (3857809-3858045) | |
| 976-1168, gnl|hg17|chr5 (64908445-64908677) | |
| 976-1168, gnl|Hg17|chr5 (64908462-64908654) | |
| 976-1168, gnl|loxAfr1|scaffold_214980 (723-955) | |
| 976-1168, gnl|mm7|chr13 (101355007-101354776) | |
| 976-1168, gnl|Mm7|chr13 (101354988-101354796) | |
| 976-1168, gnl|monDom2|scaffold_27 (30804363-30804596) | |
| 976-1168, gnl|panTro1|chr4 (51025164-51024932) | |
| 976-1168, gnl|rheMac2|chr6 (63452737-63452969) | |
| 976-1168, gnl|rn3|chr2 (35068921-35068689) | |
| 976-1168, gnl|tetNig1|chrUn_random (1442398-1442615) | |
| 976-1168, gnl|xenTro1|scaffold_597 (292080-291875) | |
| 1333-1540, gnl|bosTau2|chr20 (8850798-8850591) | |
| 1333-1540, gnl|Hg17|chr5 (64914597-64914804) | |
| 1333-1540, gnl|Mm7|chr13 (101347523-101347321) | |
| 1616-1740, gnl|bosTau2|chr20 (8848377-8848253) | |
| 1616-1740, gnl|canFam2|chr2 (54190065-54190153) | |
| 1616-1740, gnl|danRer3|chr2 (46308761-46308854) | |
| 1616-1740, gnl|dasNov1|scaffold_136463 (2733-2817) | |
| 1616-1740, gnl|echTel1|scaffold_279687 (40904-40816) | |
| 1616-1740, gnl|fr1|chrUn (36052662-36052755) | |
| 1616-1740, gnl|galGal2|chrZ (3862801-3862889) | |
| 1616-1740, gnl|hg17|chr5 (64917576-64917664) | |
| 1616-1740, gnl|Hg17|chr5 (64917577-64917701) | |
| 1616-1740, gnl|loxAfr1|scaffold_15885 (53897-53809) | |
| 1616-1740, gnl|mm7|chr13 (101345000-101344910) | |
| 1616-1740, gnl|Mm7|chr13 (101344997-101344871) | |
| 1616-1740, gnl|monDom2|scaffold_27 (30816310-30816398) | |
| 1616-1740, gnl|oryCun1|scaffold_189430 (7612-7519) | |
| 1616-1740, gnl|panTro1|chr4 (51016051-51015963) | |
| 1616-1740, gnl|rheMac2|chr6 (63462580-63462668) | |
| 1616-1740, gnl|rn3|chr2 (35058953-35058863) | |
| 1616-1740, gnl|tetNig1|chrUn_random (1443436-1443529) | |
| 1616-1740, gnl|xenTro1|scaffold_597 (289402-289314) | |
| 1803-2095, gnl|bosTau2|chr20 (8846864-8846572) | |
| 1803-2095, gnl|canFam2|chr2 (54191264-54191477) | |
| 1803-2095, gnl|danRer3|chr2 (46310276-46310494) | |
| 1803-2095, gnl|echTel1|scaffold_279687 (38651-38439) | |
| 1803-2095, gnl|fr1|chrUn (36053040-36053218) | |
| 1803-2095, gnl|galGal2|chrZ (3863971-3864184) | |
| 1803-2095, gnl|hg17|chr5 (64918803-64919016) | |
| 1803-2095, gnl|Hg17|chr5 (64918835-64919122) | |
| 1803-2095, gnl|loxAfr1|scaffold_15885 (52023-51810) | |
| 1803-2095, gnl|mm7|chr13 (101343392-101343192) | |
| 1803-2095, gnl|Mm7|chr13 (101343357-101343057) | |
| 1803-2095, gnl|monDom2|scaffold_27 (30817614-30817812) | |
| 1803-2095, gnl|oryCun1|scaffold_199594 (174210-173999) | |
| 1803-2095, gnl|panTro1|chr4 (51014825-51014612) | |
| 1803-2095, gnl|rheMac2|chr6 (63463832-63464045) | |
| 1803-2095, gnl|rn3|chr2 (35057383-35057179) | |
| 1803-2095, gnl|tetNig1|chrUn_random (1443892-1444061) | |
| 1803-2095, gnl|xenTro1|scaffold_597 (288542-288383) |
| Aligned organism(s): 80 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-202, gnl|bosTau2|chr20 (8868241-8868046) | |
| 1-202, gnl|Hg17|chr5 (64894888-64895089) | |
| 1-202, gnl|Mm7|chr13 (101366516-101366315) | |
| 307-407, gnl|bosTau2|chr20 (8862978-8862878) | |
| 307-407, gnl|canFam2|chr2 (54175752-54175885) | |
| 307-407, gnl|danRer3|chr2 (46270227-46270368) | |
| 307-407, gnl|dasNov1|scaffold_22876 (10333-10200) | |
| 307-407, gnl|echTel1|scaffold_312914 (44464-44597) | |
| 307-407, gnl|fr1|chrUn (36050481-36050607) | |
| 307-407, gnl|galGal2|chrZ (3853107-3853231) | |
| 307-407, gnl|hg17|chr5 (64901191-64901324) | |
| 307-407, gnl|Hg17|chr5 (64901216-64901316) | |
| 307-407, gnl|mm7|chr13 (101360928-101360794) | |
| 307-407, gnl|Mm7|chr13 (101360900-101360800) | |
| 307-407, gnl|monDom2|scaffold_27 (30789807-30789942) | |
| 307-407, gnl|panTro1|chr4 (51032115-51031982) | |
| 307-407, gnl|rheMac2|chr6 (63445608-63445741) | |
| 307-407, gnl|rn3|chr2 (35074138-35074004) | |
| 307-407, gnl|tetNig1|chrUn_random (1441527-1441641) | |
| 307-407, gnl|xenTro1|scaffold_597 (295355-295224) | |
| 524-975, gnl|bosTau2|chr20 (8859427-8858976) | |
| 524-975, gnl|Hg17|chr5 (64903418-64903869) | |
| 524-975, gnl|Mm7|chr13 (101358197-101357746) | |
| 976-1168, gnl|bosTau2|chr20 (8854947-8854754) | |
| 976-1168, gnl|canFam2|chr2 (54183322-54183547) | |
| 976-1168, gnl|danRer3|chr2 (46296029-46296274) | |
| 976-1168, gnl|dasNov1|scaffold_22876 (6439-6202) | |
| 976-1168, gnl|fr1|chrUn (36051476-36051712) | |
| 976-1168, gnl|galGal2|chrZ (3857809-3858045) | |
| 976-1168, gnl|hg17|chr5 (64908445-64908677) | |
| 976-1168, gnl|Hg17|chr5 (64908462-64908654) | |
| 976-1168, gnl|loxAfr1|scaffold_214980 (723-955) | |
| 976-1168, gnl|mm7|chr13 (101355007-101354776) | |
| 976-1168, gnl|Mm7|chr13 (101354988-101354796) | |
| 976-1168, gnl|monDom2|scaffold_27 (30804363-30804596) | |
| 976-1168, gnl|panTro1|chr4 (51025164-51024932) | |
| 976-1168, gnl|rheMac2|chr6 (63452737-63452969) | |
| 976-1168, gnl|rn3|chr2 (35068921-35068689) | |
| 976-1168, gnl|tetNig1|chrUn_random (1442398-1442615) | |
| 976-1168, gnl|xenTro1|scaffold_597 (292080-291875) | |
| 1333-1540, gnl|bosTau2|chr20 (8850798-8850591) | |
| 1333-1540, gnl|Hg17|chr5 (64914597-64914804) | |
| 1333-1540, gnl|Mm7|chr13 (101347523-101347321) | |
| 1616-1740, gnl|bosTau2|chr20 (8848377-8848253) | |
| 1616-1740, gnl|canFam2|chr2 (54190065-54190153) | |
| 1616-1740, gnl|danRer3|chr2 (46308761-46308854) | |
| 1616-1740, gnl|dasNov1|scaffold_136463 (2733-2817) | |
| 1616-1740, gnl|echTel1|scaffold_279687 (40904-40816) | |
| 1616-1740, gnl|fr1|chrUn (36052662-36052755) | |
| 1616-1740, gnl|galGal2|chrZ (3862801-3862889) | |
| 1616-1740, gnl|hg17|chr5 (64917576-64917664) | |
| 1616-1740, gnl|Hg17|chr5 (64917577-64917701) | |
| 1616-1740, gnl|loxAfr1|scaffold_15885 (53897-53809) | |
| 1616-1740, gnl|mm7|chr13 (101345000-101344910) | |
| 1616-1740, gnl|Mm7|chr13 (101344997-101344871) | |
| 1616-1740, gnl|monDom2|scaffold_27 (30816310-30816398) | |
| 1616-1740, gnl|oryCun1|scaffold_189430 (7612-7519) | |
| 1616-1740, gnl|panTro1|chr4 (51016051-51015963) | |
| 1616-1740, gnl|rheMac2|chr6 (63462580-63462668) | |
| 1616-1740, gnl|rn3|chr2 (35058953-35058863) | |
| 1616-1740, gnl|tetNig1|chrUn_random (1443436-1443529) | |
| 1616-1740, gnl|xenTro1|scaffold_597 (289402-289314) | |
| 1803-2095, gnl|bosTau2|chr20 (8846864-8846572) | |
| 1803-2095, gnl|canFam2|chr2 (54191264-54191477) | |
| 1803-2095, gnl|danRer3|chr2 (46310276-46310494) | |
| 1803-2095, gnl|echTel1|scaffold_279687 (38651-38439) | |
| 1803-2095, gnl|fr1|chrUn (36053040-36053218) | |
| 1803-2095, gnl|galGal2|chrZ (3863971-3864184) | |
| 1803-2095, gnl|hg17|chr5 (64918803-64919016) | |
| 1803-2095, gnl|Hg17|chr5 (64918835-64919122) | |
| 1803-2095, gnl|loxAfr1|scaffold_15885 (52023-51810) | |
| 1803-2095, gnl|mm7|chr13 (101343392-101343192) | |
| 1803-2095, gnl|Mm7|chr13 (101343357-101343057) | |
| 1803-2095, gnl|monDom2|scaffold_27 (30817614-30817812) | |
| 1803-2095, gnl|oryCun1|scaffold_199594 (174210-173999) | |
| 1803-2095, gnl|panTro1|chr4 (51014825-51014612) | |
| 1803-2095, gnl|rheMac2|chr6 (63463832-63464045) | |
| 1803-2095, gnl|rn3|chr2 (35057383-35057179) | |
| 1803-2095, gnl|tetNig1|chrUn_random (1443892-1444061) | |
| 1803-2095, gnl|xenTro1|scaffold_597 (288542-288383) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| cty (0.31224) | |
| lin (0.291206) | |
| fce (0.271592) | |
| mgp (0.230681) | |
| fli (0.202881) | |
| eje (0.197668) | |
| gul (0.177588) | |
| rec (0.17307) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| ski (0.146735) | |
| liv (0.146284) | |
| spl (0.143184) | |
| nmm (0.132802) | |
| sug (0.127291) | |
| tra (0.123092) | |
| eru (0.120048) | |
| ebs (0.118301) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.31224) | |
| lin (0.291206) | |
| fce (0.271592) | |
| mgp (0.230681) | |
| fli (0.202881) | |
| eje (0.197668) | |
| gul (0.177588) | |
| rec (0.17307) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| ski (0.146735) | |
| liv (0.146284) | |
| spl (0.143184) | |
| nmm (0.132802) | |
| sug (0.127291) | |
| tra (0.123092) | |
| eru (0.120048) | |
| ebs (0.118301) |