Non-Coding RNA Search

Ss1.1-Pig4-TMW8052O16.3

Sequence:


               
               TGCAGCCACCGGTCGAGAGGCAGCGACTGCCCCGCGGCTGGTGGCTCGCGCGCCCGGGGC
CCCGAGGACAGCGGGCCCGGCGCTCGGGCCGCAGCCCTCCCCGTCCTGCCCACGCGTGCC
TTACTCCCGGTCCTGAGCCCGGGACCGCGGCGCGGTTTCTGAGGCGTCCGCCAGAAACCT
CCTGTCGTGTCGATCATGAAGTCCGATGACTAGGCGTCCACCCGTGACTGTGACGCGTTT
GTAGGGTGGGGGTCAGTGAGGTGTTGGACTGGAATGGCAGAGGAGTTGGAAGCAGGTTTT
TTTCTCTAGGCTTTTTGTTCGATTACGTAAAAACCACCAATCAGGTACTGTACTGTCGTT
TAACATTGCTTTAATTGCAACAAAGCAGCTTTTGTGGCCGTCGAGTCCAATCTGTAAATA
GGAGGCGGAGTTCAAGCCATCCTGCCCGCGCCCTTCCCGGCTGCAGCTCTGACGCGCCTC
GAGTCCAGAGCGCCATCTGGGAGGTGACTGTCACTGCAGCGGAGACGTGGCGTTGAAGAC
AAGCCTTCCCTCGCACGTCACGCTACCGGTCCTGCGCGACTCGGGGGCGTGCGCCCATTT
CAGGTGTTCCCTCGGATGCCCCGGACACATCCCAGCTGTTTACGGGCAGTGCCCGCGGTG
CCCGCCGTGTGGCCGGTGCTCAGCACACCCGTTTACAGCATCCCGTCGATGACCCCTCTC
CAAGCCCTCCCTGGTGGCTCCACGCCGTGAAGCCAGCTGGAAACGTGTGCACTGACCTCC
AGTTTGATCACCTTCTGTGTAAACTTCTCTGTAGAAGCGGCGGCGGCGGCTTATTAACGG
GGAAAGCGATTGTCGTGTTGCGGTTGTAAGACTAGCCTTAGGGGGTTCGAATTTCTTTTT
TGTTTCACAGGGAAGATGCAGCCATCAGCGGGTGTCAGAACCCAGGACATCGGGACGCAG
TATCAGTCACCAGGTTCTCCTAACAATACTACGTCTTCGAAGTTTCTGCCTCAACATCTA
GGAAAGGTTCGTTTCCTTATTTCCAGCCAGTTAAATGTTCTGGATGAAACAGGTCTCTCA
CTTGCCTACGACTTTTAGAGAAGTCGTCCTTCTGTTAAAATACTGTACCTACCATTAATC
TGGATTTGCATTGACTATGTTTTAGTGTATTTATAAATGGTGAACTCAGTTTCTGAAATT
AAACTTTTTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAGCCACCGGTCGAGAGGCAGCGACTGCCCCGCGGCTGGTGGCTCGCGCGCCCGGGGC
CCCGAGGACAGCGGGCCCGGCGCTCGGGCCGCAGCCCTCCCCGTCCTGCCCACGCGTGCC
TTACTCCCGGTCCTGAGCCCGGGACCGCGGCGCGGTTTCTGAGGCGTCCGCCAGAAACCT
CCTGTCGTGTCGATCATGAAGTCCGATGACTAGGCGTCCACCCGTGACTGTGACGCGTTT
GTAGGGTGGGGGTCAGTGAGGTGTTGGACTGGAATGGCAGAGGAGTTGGAAGCAGGTTTT
TTTCTCTAGGCTTTTTGTTCGATTACGTAAAAACCACCAATCAGGTACTGTACTGTCGTT
TAACATTGCTTTAATTGCAACAAAGCAGCTTTTGTGGCCGTCGAGTCCAATCTGTAAATA
GGAGGCGGAGTTCAAGCCATCCTGCCCGCGCCCTTCCCGGCTGCAGCTCTGACGCGCCTC
GAGTCCAGAGCGCCATCTGGGAGGTGACTGTCACTGCAGCGGAGACGTGGCGTTGAAGAC
AAGCCTTCCCTCGCACGTCACGCTACCGGTCCTGCGCGACTCGGGGGCGTGCGCCCATTT
CAGGTGTTCCCTCGGATGCCCCGGACACATCCCAGCTGTTTACGGGCAGTGCCCGCGGTG
CCCGCCGTGTGGCCGGTGCTCAGCACACCCGTTTACAGCATCCCGTCGATGACCCCTCTC
CAAGCCCTCCCTGGTGGCTCCACGCCGTGAAGCCAGCTGGAAACGTGTGCACTGACCTCC
AGTTTGATCACCTTCTGTGTAAACTTCTCTGTAGAAGCGGCGGCGGCGGCTTATTAACGG
GGAAAGCGATTGTCGTGTTGCGGTTGTAAGACTAGCCTTAGGGGGTTCGAATTTCTTTTT
TGTTTCACAGGGAAGATGCAGCCATCAGCGGGTGTCAGAACCCAGGACATCGGGACGCAG
TATCAGTCACCAGGTTCTCCTAACAATACTACGTCTTCGAAGTTTCTGCCTCAACATCTA
GGAAAGGTTCGTTTCCTTATTTCCAGCCAGTTAAATGTTCTGGATGAAACAGGTCTCTCA
CTTGCCTACGACTTTTAGAGAAGTCGTCCTTCTGTTAAAATACTGTACCTACCATTAATC
TGGATTTGCATTGACTATGTTTTAGTGTATTTATAAATGGTGAACTCAGTTTCTGAAATT
AAACTTTTTATT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               923-1212, gnl|bosTau2|chr10 (37076780-37077074)
               

               
               923-1212, gnl|Hg17|chr22 (48602692-48602943)
               

               
               923-1212, gnl|Mm7|chr3 (91213922-91214184)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               923-1212, gnl|bosTau2|chr10 (37076780-37077074)
               

               
               923-1212, gnl|Hg17|chr22 (48602692-48602943)
               

               
               923-1212, gnl|Mm7|chr3 (91213922-91214184)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               che (0.408942)
               

               
               fce (0.271592)
               

               
               col (0.195008)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               eru (0.120048)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.408942)
               

               
               fce (0.271592)
               

               
               col (0.195008)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               eru (0.120048)

	923-1212, gnl\|bosTau2\|chr10 (37076780-37077074)
	923-1212, gnl\|Hg17\|chr22 (48602692-48602943)
	923-1212, gnl\|Mm7\|chr3 (91213922-91214184)

	che (0.408942)
	fce (0.271592)
	col (0.195008)
	cut (0.169924)
	fco (0.157208)
	isp (0.150376)
	fat (0.147427)
	spl (0.143184)
	nca (0.136874)
	pla (0.133672)
	eru (0.120048)