Non-Coding RNA Search

Ss1.1-Pig4-TMW8052O23.3

Sequence:


               
               TGCAGACCCACAGGATTCGGTCATGGAGTCTCAGATGCTTCTTCTGGTGCTCTTGGGGGC
CCTGACCGAGACCTGGGCGGGCTCTCACTCCATGAGGTATTTCCACACGGTCGTGTCCCG
GCCCGGCCACGGGGAGCCCCGGTACCTTGAGGTCGGCTACGTGGACGACACGCAGTTCGT
GCGGTTCGACAGCGAAGCTCAGAATCCGAGGATGGAGCCGCGGGCGCCGTGGGTGGAGCA
GGAGGGGCAGGAGTATTGGGATGAGGAGACACAGCGCGCCAAGGATCTTGTACAGAATTT
TCGAAGGAACCTGATGATCCTTCGGGGCTACTACAACCAGAGTGAGACCGGGTCTCATAC
CTTCCAGTTGACCTATGGTTGCGAGGAGGGGTCGCACGGACGCCCCCTTCACGCGCACTG
GCAGTACGCCTACGACGGCGAGGATTACATCACTTTGAACGAGGACCTGAGTTCCTGGAC
TGCAGCGGACATGGCGGCTCGGGTCACACAGCGCAAGTGGGACAAGTCCCGTGCTCATGA
GCGCTTCAAGAGCTACCTGGAGGGCACGTGTGTGGAGTGGCTCAGAAGATACCTGGAGAA
CGGGAGGGAGATGCTGCAACGTGCAGACCCCCCAAAGGCATATGTGACCTGCCACCCCAG
CTCTGACAATAAAGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTAAGGAGATCTC
CCTGACCTGGCGGCGGGAGGGGCAGGACCAGAGCCAGGACGTGGAGGTTGTGGAAACCAG
GCCCTCAGGGGATGGGACCTTCCAGAAGTGGGCGGCCCTGGTGGTGCCTCCTGGAGAGGA
GCAGAGCTACACCTGCCATGTGAAGCACGAGGGCCTGCAGGAGCCACTCACCCTGAGATG
GGAACCGTCTCGGCTGTCCGCCATCACCATCGTAGGAATCGTTGCTGGTCTGGTTCTCCT
TGGAGCTGTGATCACTGTGATATGGAAAAAAAGGTTCTCAGGCAGAAAAAGAGGAAGCTA
CTCTCAGGCGCCAAGCAACAACAGCGTCGAGAACTCTGATGTGTCTCCCGCAAGTCCTCA
AGGCATCTGAATGCGTCTGTGTTCCCATCAGCGCAATGTGGGGAGATGGAAGACTGGCTT
CTCCACACTGATCTTCGCCCCATGTCCAAGCCACTTTCCTGTTCCAGCAGAGGCAGAGCT
GAGACATCTCAGCTTCTCGTAATTTCACATTCTACTGAGCTGCACTATTTTCCATATTGG
AAATAAAAATCCAAATATAAATTTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAGACCCACAGGATTCGGTCATGGAGTCTCAGATGCTTCTTCTGGTGCTCTTGGGGGC
CCTGACCGAGACCTGGGCGGGCTCTCACTCCATGAGGTATTTCCACACGGTCGTGTCCCG
GCCCGGCCACGGGGAGCCCCGGTACCTTGAGGTCGGCTACGTGGACGACACGCAGTTCGT
GCGGTTCGACAGCGAAGCTCAGAATCCGAGGATGGAGCCGCGGGCGCCGTGGGTGGAGCA
GGAGGGGCAGGAGTATTGGGATGAGGAGACACAGCGCGCCAAGGATCTTGTACAGAATTT
TCGAAGGAACCTGATGATCCTTCGGGGCTACTACAACCAGAGTGAGACCGGGTCTCATAC
CTTCCAGTTGACCTATGGTTGCGAGGAGGGGTCGCACGGACGCCCCCTTCACGCGCACTG
GCAGTACGCCTACGACGGCGAGGATTACATCACTTTGAACGAGGACCTGAGTTCCTGGAC
TGCAGCGGACATGGCGGCTCGGGTCACACAGCGCAAGTGGGACAAGTCCCGTGCTCATGA
GCGCTTCAAGAGCTACCTGGAGGGCACGTGTGTGGAGTGGCTCAGAAGATACCTGGAGAA
CGGGAGGGAGATGCTGCAACGTGCAGACCCCCCAAAGGCATATGTGACCTGCCACCCCAG
CTCTGACAATAAAGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTAAGGAGATCTC
CCTGACCTGGCGGCGGGAGGGGCAGGACCAGAGCCAGGACGTGGAGGTTGTGGAAACCAG
GCCCTCAGGGGATGGGACCTTCCAGAAGTGGGCGGCCCTGGTGGTGCCTCCTGGAGAGGA
GCAGAGCTACACCTGCCATGTGAAGCACGAGGGCCTGCAGGAGCCACTCACCCTGAGATG
GGAACCGTCTCGGCTGTCCGCCATCACCATCGTAGGAATCGTTGCTGGTCTGGTTCTCCT
TGGAGCTGTGATCACTGTGATATGGAAAAAAAGGTTCTCAGGCAGAAAAAGAGGAAGCTA
CTCTCAGGCGCCAAGCAACAACAGCGTCGAGAACTCTGATGTGTCTCCCGCAAGTCCTCA
AGGCATCTGAATGCGTCTGTGTTCCCATCAGCGCAATGTGGGGAGATGGAAGACTGGCTT
CTCCACACTGATCTTCGCCCCATGTCCAAGCCACTTTCCTGTTCCAGCAGAGGCAGAGCT
GAGACATCTCAGCTTCTCGTAATTTCACATTCTACTGAGCTGCACTATTTTCCATATTGG
AAATAAAAATCCAAATATAAATTTAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6S7D1_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6S7D1_PIG

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               80-351, gnl|bosTau2|chr23 (21180745-21180474)
               

               
               80-351, gnl|Hg17|chr6 (30335570-30335841)
               

               
               80-351, gnl|Mm7|chr17 (33571216-33571487)
               


               
               388-634, gnl|bosTau2|chr20 (36655631-36655873)
               

               
               388-634, gnl|Hg17|chr6 (31347067-31346829)
               

               
               388-634, gnl|Mm7|chr17 (32077844-32077606)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               80-351, gnl|bosTau2|chr23 (21180745-21180474)
               

               
               80-351, gnl|Hg17|chr6 (30335570-30335841)
               

               
               80-351, gnl|Mm7|chr17 (33571216-33571487)
               


               
               388-634, gnl|bosTau2|chr20 (36655631-36655873)
               

               
               388-634, gnl|Hg17|chr6 (31347067-31346829)
               

               
               388-634, gnl|Mm7|chr17 (32077844-32077606)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               csp (0.805932)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.805932)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	80-351, gnl\|bosTau2\|chr23 (21180745-21180474)
	80-351, gnl\|Hg17\|chr6 (30335570-30335841)
	80-351, gnl\|Mm7\|chr17 (33571216-33571487)

	388-634, gnl\|bosTau2\|chr20 (36655631-36655873)
	388-634, gnl\|Hg17\|chr6 (31347067-31346829)
	388-634, gnl\|Mm7\|chr17 (32077844-32077606)

	csp (0.805932)
	ece (0.229305)
	cty (0.20816)
	hea (0.204499)
	col (0.195008)
	sag (0.182715)
	fty (0.17584)
	fbs (0.175346)
	hyp (0.142837)
	lnt (0.142308)
	che (0.136314)
	pla (0.133672)
	lyg (0.133103)
	ute (0.132784)
	kid (0.129735)
	ova (0.129132)
	ebs (0.118301)
	cbl (0.114797)
	jca (0.11396)
	eje (0.0988338)