Ss1.1-Pig4-TMW8052P01.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCGTGAAGGACCTCATGGTCATCAACCGCTCCACCGCCGAGCTGCCGCTCACGGTGTCC TACGACAAGATCTCGCTGGGGCGGCTGCGCTTCTGGATCCACATGCAGGACGCCGTGTAC TCGCTGCAGCAGCTCGGCTTTTCGGAGAAGGACGCTGACGAGGTGAAGGGCATTTTCGTG GACACCAACCTGTACTTCCTGGCGCTGACCTTCTTCGTGGCCGCGTTCCACCTGCTTTTT GATTTCCTGGCGTTTAAAAACGACATCAGTTTTTGGAAGAAAAAGAAGACCATGATTGGC ATGTCCACCAAAGCAGTGCTCTGGCGCTGCTTCAGCACCGTGGTCATCTTCCTGTTCCTG CTGGACGAGCAGACGAGCCTGCTGGTGCTGGTCCCCGCGGGCATCGGGGCCGCCATCGAG CTGTGGAAGGTGAAGAAGGCCTTGAAGATGAGCGTGGTTTGGAGAGGCCTGAGGCCCGCC TTTCAGTTCGGCTCGTCCAGTGAATCCGAGAGGAAGACGGAGGAGTACGACACGCAGGCC ATGACGCTCTTGTCCTACCTCCTCTACCCGCTGTGCGTCGGAGGCGCCGTCTACTCCCTG CTTAACGTCAAGTACAAAAGCTGGTACTCCTGGCTCATCAACAGCTTCGTCAACGGGGTC TACGCGTTCGGCTTCCTGTTCATGCTGCCCCAGCTCTTCGTGAACTACAAGATGAAGTCG GTGGCGCACCTGCCCTGGAAAGCCTTCACCTACAAGGCTTTCAACACCTTCATTGACGAC GTGTTCGCCTTCATCATCACCATGCCCACCTCCCACCGGCTGGCCTGCTTCAGGGACGAC GTGGTGTTTCTCGTGTACCTGTACCAGCGATGGCTTTATCCCGTGGATAAGAGCAGGGTG AACGAGTTCGGGGAGTCGTACGAGGAGAGCCCCCCGCGGAAGCCCCACACAGACTGAGCG CCCCGCTGGCTGCTCGTGGCCGCCTGGCGGAGCCTCGCGTGTCAGCCGAGTATTTTGGAC ACTTTGGTGGAACTTCCGGGCGTCCCATCCTCTGCGTTGCCAAAACCTCGGGAGGCCCCT TGCGCCCCCGGTCCCCTCGCGCCGTGATCGGGATCGGGAGGCGCTGCGGGCGCAGGGGCC TCGCCCGCAGGACCCGTGTCACGGCGTCTAAAAGTGCCCCTCGAAGGAAAGTCTGACGCC TCTGAGTCCATTCCGTGTAGACTCTGGGGTCACGCGGCTTTTTTCCTTTTTGTTTAAAAT TTGACAATTTTAAAGCTTAATGTATGTACGTTTCTATTTTAAAATAAATTTCTCCGGCTG TAACGGGTTTCCCGGCCTGGGACGACGTGCCGGTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCGTGAAGGACCTCATGGTCATCAACCGCTCCACCGCCGAGCTGCCGCTCACGGTGTCC TACGACAAGATCTCGCTGGGGCGGCTGCGCTTCTGGATCCACATGCAGGACGCCGTGTAC TCGCTGCAGCAGCTCGGCTTTTCGGAGAAGGACGCTGACGAGGTGAAGGGCATTTTCGTG GACACCAACCTGTACTTCCTGGCGCTGACCTTCTTCGTGGCCGCGTTCCACCTGCTTTTT GATTTCCTGGCGTTTAAAAACGACATCAGTTTTTGGAAGAAAAAGAAGACCATGATTGGC ATGTCCACCAAAGCAGTGCTCTGGCGCTGCTTCAGCACCGTGGTCATCTTCCTGTTCCTG CTGGACGAGCAGACGAGCCTGCTGGTGCTGGTCCCCGCGGGCATCGGGGCCGCCATCGAG CTGTGGAAGGTGAAGAAGGCCTTGAAGATGAGCGTGGTTTGGAGAGGCCTGAGGCCCGCC TTTCAGTTCGGCTCGTCCAGTGAATCCGAGAGGAAGACGGAGGAGTACGACACGCAGGCC ATGACGCTCTTGTCCTACCTCCTCTACCCGCTGTGCGTCGGAGGCGCCGTCTACTCCCTG CTTAACGTCAAGTACAAAAGCTGGTACTCCTGGCTCATCAACAGCTTCGTCAACGGGGTC TACGCGTTCGGCTTCCTGTTCATGCTGCCCCAGCTCTTCGTGAACTACAAGATGAAGTCG GTGGCGCACCTGCCCTGGAAAGCCTTCACCTACAAGGCTTTCAACACCTTCATTGACGAC GTGTTCGCCTTCATCATCACCATGCCCACCTCCCACCGGCTGGCCTGCTTCAGGGACGAC GTGGTGTTTCTCGTGTACCTGTACCAGCGATGGCTTTATCCCGTGGATAAGAGCAGGGTG AACGAGTTCGGGGAGTCGTACGAGGAGAGCCCCCCGCGGAAGCCCCACACAGACTGAGCG CCCCGCTGGCTGCTCGTGGCCGCCTGGCGGAGCCTCGCGTGTCAGCCGAGTATTTTGGAC ACTTTGGTGGAACTTCCGGGCGTCCCATCCTCTGCGTTGCCAAAACCTCGGGAGGCCCCT TGCGCCCCCGGTCCCCTCGCGCCGTGATCGGGATCGGGAGGCGCTGCGGGCGCAGGGGCC TCGCCCGCAGGACCCGTGTCACGGCGTCTAAAAGTGCCCCTCGAAGGAAAGTCTGACGCC TCTGAGTCCATTCCGTGTAGACTCTGGGGTCACGCGGCTTTTTTCCTTTTTGTTTAAAAT TTGACAATTTTAAAGCTTAATGTATGTACGTTTCTATTTTAAAATAAATTTCTCCGGCTG TAACGGGTTTCCCGGCCTGGGACGACGTGCCGGTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 20-137, - strand, RNAz p=0.647313 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 20-137, - strand, RNAz p=0.647313 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 18-137, gnl|bosTau2|chr20 (42629947-42630066) | |
| 18-137, gnl|canFam2|chr34 (14275544-14275406) | |
| 18-137, gnl|danRer3|chr20 (20286612-20286489) | |
| 18-137, gnl|dasNov1|scaffold_60630 (635-770) | |
| 18-137, gnl|echTel1|scaffold_218084 (2482-2581) | |
| 18-137, gnl|fr1|chrUn (280366222-280366100) | |
| 18-137, gnl|galGal2|chr2 (85727309-85727435) | |
| 18-137, gnl|hg17|chr5 (1388167-1388309) | |
| 18-137, gnl|Hg17|chr5 (1388290-1388171) | |
| 18-137, gnl|loxAfr1|scaffold_47782 (417-273) | |
| 18-137, gnl|mm7|chr13 (70543342-70543197) | |
| 18-137, gnl|Mm7|chr13 (70543217-70543336) | |
| 18-137, gnl|monDom2|scaffold_4 (15771426-15771552) | |
| 18-137, gnl|oryCun1|scaffold_89048 (897-1038) | |
| 18-137, gnl|panTro1|chr4 (1434796-1434938) | |
| 18-137, gnl|rheMac2|chr6 (1013358-1013500) | |
| 18-137, gnl|rn3|chr1 (30486363-30486508) | |
| 18-137, gnl|tetNig1|chr21 (2644886-2644761) | |
| 18-137, gnl|xenTro1|scaffold_26 (1558203-1558068) | |
| 314-423, gnl|bosTau2|chr20 (42631737-42631846) | |
| 314-423, gnl|Hg17|chr5 (1383501-1383392) | |
| 314-423, gnl|Mm7|chr13 (70545729-70545838) | |
| 755-873, gnl|bosTau2|chr20 (42636105-42636223) | |
| 755-873, gnl|canFam2|chr1 (113362540-113362440) | |
| 755-873, gnl|canFam2|chr34 (14282450-14282315) | |
| 755-873, gnl|danRer3|chr15 (14041262-14041358) | |
| 755-873, gnl|danRer3|chr20 (20293701-20293564) | |
| 755-873, gnl|dasNov1|scaffold_116825 (4178-4278) | |
| 755-873, gnl|dasNov1|scaffold_94582 (3514-3375) | |
| 755-873, gnl|echTel1|scaffold_218084 (1268-1382) | |
| 755-873, gnl|echTel1|scaffold_267263 (25071-25171) | |
| 755-873, gnl|fr1|chrUn (87387163-87387063) | |
| 755-873, gnl|fr1|chrUn (280368050-280367930) | |
| 755-873, gnl|hg17|chr19 (50187405-50187505) | |
| 755-873, gnl|hg17|chr5 (1373725-1373865) | |
| 755-873, gnl|Hg17|chr5 (1373848-1373730) | |
| 755-873, gnl|loxAfr1|scaffold_35372 (28675-28775) | |
| 755-873, gnl|loxAfr1|scaffold_47782 (12519-12379) | |
| 755-873, gnl|mm7|chr13 (70550599-70550460) | |
| 755-873, gnl|Mm7|chr13 (70550474-70550592) | |
| 755-873, gnl|mm7|chr7 (17316525-17316425) | |
| 755-873, gnl|monDom2|scaffold_221 (112887-112789) | |
| 755-873, gnl|monDom2|scaffold_4 (15756414-15756554) | |
| 755-873, gnl|oryCun1|scaffold_188405 (9281-9169) | |
| 755-873, gnl|oryCun1|scaffold_7848 (7042-6938) | |
| 755-873, gnl|panTro1|chr20 (47327088-47327188) | |
| 755-873, gnl|panTro1|chr4_random (13404562-13404422) | |
| 755-873, gnl|rheMac2|chr6 (1003265-1003171) | |
| 755-873, gnl|rheMac2|chr6 (1003136-1003276) | |
| 755-873, gnl|rn3|chr1 (79017933-79017833) | |
| 755-873, gnl|rn3|chr1 (30479544-30479683) | |
| 755-873, gnl|tetNig1|chr16 (1656600-1656500) | |
| 755-873, gnl|tetNig1|chr21 (2646698-2646573) | |
| 1154-1348, gnl|bosTau2|chr20 (42636938-42637132) | |
| 1154-1348, gnl|Hg17|chr5 (1371151-1370959) | |
| 1154-1348, gnl|Mm7|chr13 (70552512-70552704) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 18-137, gnl|bosTau2|chr20 (42629947-42630066) | |
| 18-137, gnl|canFam2|chr34 (14275544-14275406) | |
| 18-137, gnl|danRer3|chr20 (20286612-20286489) | |
| 18-137, gnl|dasNov1|scaffold_60630 (635-770) | |
| 18-137, gnl|echTel1|scaffold_218084 (2482-2581) | |
| 18-137, gnl|fr1|chrUn (280366222-280366100) | |
| 18-137, gnl|galGal2|chr2 (85727309-85727435) | |
| 18-137, gnl|hg17|chr5 (1388167-1388309) | |
| 18-137, gnl|Hg17|chr5 (1388290-1388171) | |
| 18-137, gnl|loxAfr1|scaffold_47782 (417-273) | |
| 18-137, gnl|mm7|chr13 (70543342-70543197) | |
| 18-137, gnl|Mm7|chr13 (70543217-70543336) | |
| 18-137, gnl|monDom2|scaffold_4 (15771426-15771552) | |
| 18-137, gnl|oryCun1|scaffold_89048 (897-1038) | |
| 18-137, gnl|panTro1|chr4 (1434796-1434938) | |
| 18-137, gnl|rheMac2|chr6 (1013358-1013500) | |
| 18-137, gnl|rn3|chr1 (30486363-30486508) | |
| 18-137, gnl|tetNig1|chr21 (2644886-2644761) | |
| 18-137, gnl|xenTro1|scaffold_26 (1558203-1558068) | |
| 314-423, gnl|bosTau2|chr20 (42631737-42631846) | |
| 314-423, gnl|Hg17|chr5 (1383501-1383392) | |
| 314-423, gnl|Mm7|chr13 (70545729-70545838) | |
| 755-873, gnl|bosTau2|chr20 (42636105-42636223) | |
| 755-873, gnl|canFam2|chr1 (113362540-113362440) | |
| 755-873, gnl|canFam2|chr34 (14282450-14282315) | |
| 755-873, gnl|danRer3|chr15 (14041262-14041358) | |
| 755-873, gnl|danRer3|chr20 (20293701-20293564) | |
| 755-873, gnl|dasNov1|scaffold_116825 (4178-4278) | |
| 755-873, gnl|dasNov1|scaffold_94582 (3514-3375) | |
| 755-873, gnl|echTel1|scaffold_218084 (1268-1382) | |
| 755-873, gnl|echTel1|scaffold_267263 (25071-25171) | |
| 755-873, gnl|fr1|chrUn (87387163-87387063) | |
| 755-873, gnl|fr1|chrUn (280368050-280367930) | |
| 755-873, gnl|hg17|chr19 (50187405-50187505) | |
| 755-873, gnl|hg17|chr5 (1373725-1373865) | |
| 755-873, gnl|Hg17|chr5 (1373848-1373730) | |
| 755-873, gnl|loxAfr1|scaffold_35372 (28675-28775) | |
| 755-873, gnl|loxAfr1|scaffold_47782 (12519-12379) | |
| 755-873, gnl|mm7|chr13 (70550599-70550460) | |
| 755-873, gnl|Mm7|chr13 (70550474-70550592) | |
| 755-873, gnl|mm7|chr7 (17316525-17316425) | |
| 755-873, gnl|monDom2|scaffold_221 (112887-112789) | |
| 755-873, gnl|monDom2|scaffold_4 (15756414-15756554) | |
| 755-873, gnl|oryCun1|scaffold_188405 (9281-9169) | |
| 755-873, gnl|oryCun1|scaffold_7848 (7042-6938) | |
| 755-873, gnl|panTro1|chr20 (47327088-47327188) | |
| 755-873, gnl|panTro1|chr4_random (13404562-13404422) | |
| 755-873, gnl|rheMac2|chr6 (1003265-1003171) | |
| 755-873, gnl|rheMac2|chr6 (1003136-1003276) | |
| 755-873, gnl|rn3|chr1 (79017933-79017833) | |
| 755-873, gnl|rn3|chr1 (30479544-30479683) | |
| 755-873, gnl|tetNig1|chr16 (1656600-1656500) | |
| 755-873, gnl|tetNig1|chr21 (2646698-2646573) | |
| 1154-1348, gnl|bosTau2|chr20 (42636938-42637132) | |
| 1154-1348, gnl|Hg17|chr5 (1371151-1370959) | |
| 1154-1348, gnl|Mm7|chr13 (70552512-70552704) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| amn (0.417711) | |
| jej (0.395687) | |
| ton (0.351) | |
| eye (0.341006) | |
| nco (0.323468) | |
| cag (0.302389) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| pla (0.267344) | |
| cov (0.264306) | |
| cly (0.241284) | |
| nep (0.183925) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| ute (0.132784) | |
| thg (0.126791) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| jej (0.395687) | |
| ton (0.351) | |
| eye (0.341006) | |
| nco (0.323468) | |
| cag (0.302389) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| pla (0.267344) | |
| cov (0.264306) | |
| cly (0.241284) | |
| nep (0.183925) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| ute (0.132784) | |
| thg (0.126791) | |
| cty (0.10408) | |
| eje (0.0988338) |