Non-Coding RNA Search

Ss1.1-Pig4-TMW8052P04.3

Sequence:


               
               AGCGAGCCCGGGAAGAGCTGCTAAGACTTCCTCTGCGGTCTGTGAGCGCAGCCTTGGCAG
ATCCGCTGCCTCCGAGGACCACCGCGGGCAGAAGCGGCGCGTTCGGTTTCCGGCTTCAGA
GCTCTCGTCTGGGATCCCGGTTTCGAGTCTAGAGGCTGTTTGCGGAGAGAGCAGGCCAGC
GACATGGCGAAGAGCGTGGCCATCGGCATCGACCTGGGCACCACGTACTCGTGCGTGGGG
GTGTTCCAGCACGGCAAGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCC
AGCTACGTGGCCTTCACGGACACCGAGCGGCTGATCGGCGATGCGGCCAAGAACCAGGTG
GCGCTGAACCCGCAGAACACGGTGTTTGACGCGAAGCGGCTGATCGGGCGCAAGTTCGGC
GACCCGGTGGTGCAGGCGGACATGAAGCACTGGCCCTTCCGGGTGATCAACGACGGGGAC
AAGCCCAAGGTGCAGGTGAGCTACAAGGGCGAGACCAAGGCGTTCTACCCGGAGGAGATC
TCGTCGATGGTGCTGACCAAGATGAAGGAGATCGCCGAGGCGTACCTGGGCCACCCGGTG
AGCAACGCGGTGATCACGGTGCCGGCCTACTTCAACGACTCGCAGCGGCAGGCCACCAAG
GATGCGGGGGTGATCGCGGGGCTGAACGTGCTGCGGATCATCAACGAGCCCACGGCGGCG
GCCATCGCCTACGGCCTGGACAGGACGGGCAAGGGGGAGCGCAACGTGCTGATCTTCGAC
CTGGGCGGGGGCACGTTCGACGTGTCCATCCTGACGATCGACGACGGCATCTTCGAGGTG
AAGGCCACGGCGGGGGACACGCACCTGGGCGGCGAGGACTTCGACAACAGGCTGGTGAAC
CACTTCGTGGAGGAGTTCAAGAGGAAGCACAAGAAGGACATCAGCCAGAACAAGCGGGCG
GTGAGGCGGCTGCGCACGGCCTGCGAGCGGGCCAAGAGGACCCTGTCGTCCAGCACGCAG
GCCAGCCTGGAGATCGACTCCCTGTTCGAGGGCATCGACTTCTACACGTCCATCACCCGG
GCGCGCTTCGAGGAGCTGTGCTCGGACCTGTTCCGCAGCACCCTGGAGCCGGTGGAGAAG
GCTCTGCGCGACGCGAAGCTGGACAAGGCCCAGATCCACGACCTGGTGCTGGTGGGGGGC
TCGACGCGCATCCCCAAGGTGCAGAAGCTGCTGCAGGACTTCTTCAACGGGCGCGACCTC
AACAAGAGCATCAACCCGGACGAGGCGGTGGCGTATGGGGCGGCGGTGCAGGCGGCCATC
CTGATGGGCGACAAGTCGGAGAACGTGCAGGACCTGCTGCTGCTGGACGTGGCCCCGCTG
TCGCTGGGGCTGGAGACGGCCGGCGGCGTGATGACGGCGCTGATCAAGCGCAACTCCACC
ATCCCCACCAAGCAGACGCAGATCTTCACCACGTACTCGGACAACCAGCCGGGCGTGCTG
ATCCAGGTGTACGAGGGCGAGAGGGCCATGACGCGGGACAACAACCTGCTGGGGCGCTTC
GAGCTGAGCGGCATCCCGCCGGCCCCGCGGGGGGTGCCCCAGATCGAGGTGACCTTCGAC
ATCGACGCCAACGGCATCCTGAACGTCACGGCGACGGACAAGAGCACGGGCAAGGCCAAC
AAGATCACCATCACCAACGACAAGGGCCGGCTGAGCAAGGAGGAGATCGAGCGCATGGTG
CAGGAGGCGGAGAAGTACAAAGCGGAGGACGAGATCCAGCGCGAGAGGGTGTCGGCCAAG
AACGCGCTGGAGTCGTACGCCTTCAACATGAAGAGCGCCGTGGAGGATGAGGGGCTCAAG
GGCAAGATCAGCGAGGCGGACAAGAAGAAGGTGCTGGACAAGTGTCAGGAGGTGATTTCC
TGGCTGGACGCCAACACGCTGGCCGAGAAGGACGAGTTTGAGCACAAGAGGAAGGAGCTG
GAGCAGGTGTGTAACCCCATCATCAGCGGACTGTACCAGGGGGCGGGTGGCCCCGGGGCT
GGCGGCTTTGGGGCTCAGGCCCCCAAAGGGGGCTCTGGGTCTGGCCCCACCATCGAGGAG
GTGGATTAGAGGCCTTAGTTTCCTTTCTCTCTATTCCTCTTTGAGACCCAAGGACTTTGA
CATTGTCCTGTATTTTAGTTCTGTTCTGTATCACTTCATTCTAAGATTAGGTTGCAATCG
CATAATTGACTTGTTATATCTTTGTGTTATAACCAGCGTGTTCTTGAGAATTATTTGCCT
TTCATGTAAGTTAGTACTGTAAGGGTGGCTTTTGGTCGCCCCCACCCATATCAACTGCTC
AAATTGTTTGCAAAGTTGTACTGTCTCTTAGTGAAGGCATAAACTTTTTCAGAGTCCAGT
GTAGAGATGAATGTATACTACTATATTTTGTCAGTTTCCCTTTTTGTAAATAAAGGCACA
TGCCAAATTCAGGCGCTTTTTTTTTTCTTTAAAAACTTTATTAAAAGTAAATAAATTCAT
ATTTGAGTGAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGAGCCCGGGAAGAGCTGCTAAGACTTCCTCTGCGGTCTGTGAGCGCAGCCTTGGCAG
ATCCGCTGCCTCCGAGGACCACCGCGGGCAGAAGCGGCGCGTTCGGTTTCCGGCTTCAGA
GCTCTCGTCTGGGATCCCGGTTTCGAGTCTAGAGGCTGTTTGCGGAGAGAGCAGGCCAGC
GACATGGCGAAGAGCGTGGCCATCGGCATCGACCTGGGCACCACGTACTCGTGCGTGGGG
GTGTTCCAGCACGGCAAGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCC
AGCTACGTGGCCTTCACGGACACCGAGCGGCTGATCGGCGATGCGGCCAAGAACCAGGTG
GCGCTGAACCCGCAGAACACGGTGTTTGACGCGAAGCGGCTGATCGGGCGCAAGTTCGGC
GACCCGGTGGTGCAGGCGGACATGAAGCACTGGCCCTTCCGGGTGATCAACGACGGGGAC
AAGCCCAAGGTGCAGGTGAGCTACAAGGGCGAGACCAAGGCGTTCTACCCGGAGGAGATC
TCGTCGATGGTGCTGACCAAGATGAAGGAGATCGCCGAGGCGTACCTGGGCCACCCGGTG
AGCAACGCGGTGATCACGGTGCCGGCCTACTTCAACGACTCGCAGCGGCAGGCCACCAAG
GATGCGGGGGTGATCGCGGGGCTGAACGTGCTGCGGATCATCAACGAGCCCACGGCGGCG
GCCATCGCCTACGGCCTGGACAGGACGGGCAAGGGGGAGCGCAACGTGCTGATCTTCGAC
CTGGGCGGGGGCACGTTCGACGTGTCCATCCTGACGATCGACGACGGCATCTTCGAGGTG
AAGGCCACGGCGGGGGACACGCACCTGGGCGGCGAGGACTTCGACAACAGGCTGGTGAAC
CACTTCGTGGAGGAGTTCAAGAGGAAGCACAAGAAGGACATCAGCCAGAACAAGCGGGCG
GTGAGGCGGCTGCGCACGGCCTGCGAGCGGGCCAAGAGGACCCTGTCGTCCAGCACGCAG
GCCAGCCTGGAGATCGACTCCCTGTTCGAGGGCATCGACTTCTACACGTCCATCACCCGG
GCGCGCTTCGAGGAGCTGTGCTCGGACCTGTTCCGCAGCACCCTGGAGCCGGTGGAGAAG
GCTCTGCGCGACGCGAAGCTGGACAAGGCCCAGATCCACGACCTGGTGCTGGTGGGGGGC
TCGACGCGCATCCCCAAGGTGCAGAAGCTGCTGCAGGACTTCTTCAACGGGCGCGACCTC
AACAAGAGCATCAACCCGGACGAGGCGGTGGCGTATGGGGCGGCGGTGCAGGCGGCCATC
CTGATGGGCGACAAGTCGGAGAACGTGCAGGACCTGCTGCTGCTGGACGTGGCCCCGCTG
TCGCTGGGGCTGGAGACGGCCGGCGGCGTGATGACGGCGCTGATCAAGCGCAACTCCACC
ATCCCCACCAAGCAGACGCAGATCTTCACCACGTACTCGGACAACCAGCCGGGCGTGCTG
ATCCAGGTGTACGAGGGCGAGAGGGCCATGACGCGGGACAACAACCTGCTGGGGCGCTTC
GAGCTGAGCGGCATCCCGCCGGCCCCGCGGGGGGTGCCCCAGATCGAGGTGACCTTCGAC
ATCGACGCCAACGGCATCCTGAACGTCACGGCGACGGACAAGAGCACGGGCAAGGCCAAC
AAGATCACCATCACCAACGACAAGGGCCGGCTGAGCAAGGAGGAGATCGAGCGCATGGTG
CAGGAGGCGGAGAAGTACAAAGCGGAGGACGAGATCCAGCGCGAGAGGGTGTCGGCCAAG
AACGCGCTGGAGTCGTACGCCTTCAACATGAAGAGCGCCGTGGAGGATGAGGGGCTCAAG
GGCAAGATCAGCGAGGCGGACAAGAAGAAGGTGCTGGACAAGTGTCAGGAGGTGATTTCC
TGGCTGGACGCCAACACGCTGGCCGAGAAGGACGAGTTTGAGCACAAGAGGAAGGAGCTG
GAGCAGGTGTGTAACCCCATCATCAGCGGACTGTACCAGGGGGCGGGTGGCCCCGGGGCT
GGCGGCTTTGGGGCTCAGGCCCCCAAAGGGGGCTCTGGGTCTGGCCCCACCATCGAGGAG
GTGGATTAGAGGCCTTAGTTTCCTTTCTCTCTATTCCTCTTTGAGACCCAAGGACTTTGA
CATTGTCCTGTATTTTAGTTCTGTTCTGTATCACTTCATTCTAAGATTAGGTTGCAATCG
CATAATTGACTTGTTATATCTTTGTGTTATAACCAGCGTGTTCTTGAGAATTATTTGCCT
TTCATGTAAGTTAGTACTGTAAGGGTGGCTTTTGGTCGCCCCCACCCATATCAACTGCTC
AAATTGTTTGCAAAGTTGTACTGTCTCTTAGTGAAGGCATAAACTTTTTCAGAGTCCAGT
GTAGAGATGAATGTATACTACTATATTTTGTCAGTTTCCCTTTTTGTAAATAAAGGCACA
TGCCAAATTCAGGCGCTTTTTTTTTTCTTTAAAAACTTTATTAAAAGTAAATAAATTCAT
ATTTGAGTGAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               HS70B_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               HS70B_PIG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               477-596, + strand, RNAz p=0.746019
               

               
               1719-1838, - strand, RNAz p=0.722848
               

               
               1999-2178, - strand, RNAz p=0.999919

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               477-596, + strand, RNAz p=0.746019
               

               
               1719-1838, - strand, RNAz p=0.722848
               

               
               1999-2178, - strand, RNAz p=0.999919

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               5-2312, gnl|bosTau2|chr23 (23438240-23440532)
               

               
               5-2312, gnl|Hg17|chr6 (31903502-31905849)
               

               
               5-2312, gnl|Mm7|chr17 (33056322-33054163)
               


               
               198-2036, gnl|bosTau2|chr10 (51572777-51570933)
               

               
               198-2036, gnl|Hg17|chr14 (64077338-64079191)
               

               
               198-2036, gnl|Mm7|chr12 (74362737-74364581)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-2312, gnl|bosTau2|chr23 (23438240-23440532)
               

               
               5-2312, gnl|Hg17|chr6 (31903502-31905849)
               

               
               5-2312, gnl|Mm7|chr17 (33056322-33054163)
               


               
               198-2036, gnl|bosTau2|chr10 (51572777-51570933)
               

               
               198-2036, gnl|Hg17|chr14 (64077338-64079191)
               

               
               198-2036, gnl|Mm7|chr12 (74362737-74364581)

Expressed library(ies): 38 entry(ies)

More info

Expressed library(ies): 38 entry(ies)

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               csk (0.844476)
               

               
               amn (0.835422)
               

               
               liv (0.731422)
               

               
               cst (0.700182)
               

               
               pla (0.66836)
               

               
               cmu (0.55918)
               

               
               cje (0.495704)
               

               
               eje (0.395335)
               

               
               aor (0.390549)
               

               
               sin (0.349895)
               

               
               cut (0.339847)
               

               
               cag (0.302389)
               

               
               lun (0.300978)
               

               
               bfe (0.299715)
               

               
               jej (0.296765)
               

               
               fce (0.271592)
               

               
               cly (0.241284)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               jca (0.22792)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               ldo (0.194005)
               

               
               gul (0.177588)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)

Expressed library(ies): 38 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.844476)
               

               
               amn (0.835422)
               

               
               liv (0.731422)
               

               
               cst (0.700182)
               

               
               pla (0.66836)
               

               
               cmu (0.55918)
               

               
               cje (0.495704)
               

               
               eje (0.395335)
               

               
               aor (0.390549)
               

               
               sin (0.349895)
               

               
               cut (0.339847)
               

               
               cag (0.302389)
               

               
               lun (0.300978)
               

               
               bfe (0.299715)
               

               
               jej (0.296765)
               

               
               fce (0.271592)
               

               
               cly (0.241284)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               jca (0.22792)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               ldo (0.194005)
               

               
               gul (0.177588)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)

	477-596, + strand, RNAz p=0.746019
	1719-1838, - strand, RNAz p=0.722848
	1999-2178, - strand, RNAz p=0.999919

	5-2312, gnl\|bosTau2\|chr23 (23438240-23440532)
	5-2312, gnl\|Hg17\|chr6 (31903502-31905849)
	5-2312, gnl\|Mm7\|chr17 (33056322-33054163)

	198-2036, gnl\|bosTau2\|chr10 (51572777-51570933)
	198-2036, gnl\|Hg17\|chr14 (64077338-64079191)
	198-2036, gnl\|Mm7\|chr12 (74362737-74364581)

	csk (0.844476)
	amn (0.835422)
	liv (0.731422)
	cst (0.700182)
	pla (0.66836)
	cmu (0.55918)
	cje (0.495704)
	eje (0.395335)
	aor (0.390549)
	sin (0.349895)
	cut (0.339847)
	cag (0.302389)
	lun (0.300978)
	bfe (0.299715)
	jej (0.296765)
	fce (0.271592)
	cly (0.241284)
	cbe (0.239234)
	pgl (0.236967)
	jca (0.22792)
	spc (0.226732)
	nms (0.213858)
	mas (0.210305)
	tes (0.207814)
	ldo (0.194005)
	gul (0.177588)
	csp (0.161186)
	fco (0.157208)
	eli (0.151814)
	hyp (0.142837)
	pty (0.142714)
	che (0.136314)
	ssp (0.13552)
	ste (0.135208)
	ova (0.129132)
	sug (0.127291)
	bla (0.124347)
	ecc (0.115035)