Non-Coding RNA Search

Ss1.1-Pig4-TMW8052P05.3

Sequence:


               
               GTGCAGGTACCAGCAAGCCTAGGAAGTCATTTGGGACGGCCGTTCGGGGTTTATACATAA
CAGCTGCGGCTCTGAGAGCGGTCACCCCCTGGCAAAGGGGCAGCAGGCTCCTCGCGGCCT
CTCGCGGACCTTGGGCTCTTCGGGAAATGTCGTCCTCCAACCCTGAAGCTGGCGAAGGGC
AGATCCACCTTACCGACAGCTGCGTCCAGAGGCTTCTGGAAATCACCGAAGGGTCAGAAT
TCCTCAGACTGGAGGTGGAGGGAGGAGGATGCTCCGGATTCCAATACAAATTTTCACTGG
ATACAGTTATCAACCCCGACGACAGGGTATTTGAACAGGGTGGGGCAAGAGTGGTGGTTG
ATTCTGATAGCTTGGCCTTCGTGAAAGGGGCCCAGGTGGACTTCAGTCAAGAACTGATCC
GAAGCTCATTTCAAGTGTTGAACAATCCTCAAGCGCAGCAAGGCTGCTCCTGTGGGTCAT
CCTTCTCTGTTAAACTTTGACGTGATAGCAGGTGACCCAGAGATTGCTCTCATTTGTACC
AATTTGAAGAACCTGGGATTTGAAGAATTCTAGAGGTTTCCTTCCAATCATGTTCTTTTT
TCCATTTTATTTCTCTCAGTCCAGGAGTGCCGTATTTTGCCACTATTTATTTTCAGAATA
TGAAGCTTTTAGTCTTGATTTAATTTCTCCAATTGTAAGGCCAAGCCTCTAGATGCTGAG
ACTTATTAACTGGTTGAAACCCAGTATAATCTGTAGAGCCTCCAGGGTTCCAGAATTTGG
AGTTACTTCTCTGGCCTTCAGAGCTGTTTGTATATATGTGTATAATTATGTATAAAAGCT
TCATTTTAAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCAGGTACCAGCAAGCCTAGGAAGTCATTTGGGACGGCCGTTCGGGGTTTATACATAA
CAGCTGCGGCTCTGAGAGCGGTCACCCCCTGGCAAAGGGGCAGCAGGCTCCTCGCGGCCT
CTCGCGGACCTTGGGCTCTTCGGGAAATGTCGTCCTCCAACCCTGAAGCTGGCGAAGGGC
AGATCCACCTTACCGACAGCTGCGTCCAGAGGCTTCTGGAAATCACCGAAGGGTCAGAAT
TCCTCAGACTGGAGGTGGAGGGAGGAGGATGCTCCGGATTCCAATACAAATTTTCACTGG
ATACAGTTATCAACCCCGACGACAGGGTATTTGAACAGGGTGGGGCAAGAGTGGTGGTTG
ATTCTGATAGCTTGGCCTTCGTGAAAGGGGCCCAGGTGGACTTCAGTCAAGAACTGATCC
GAAGCTCATTTCAAGTGTTGAACAATCCTCAAGCGCAGCAAGGCTGCTCCTGTGGGTCAT
CCTTCTCTGTTAAACTTTGACGTGATAGCAGGTGACCCAGAGATTGCTCTCATTTGTACC
AATTTGAAGAACCTGGGATTTGAAGAATTCTAGAGGTTTCCTTCCAATCATGTTCTTTTT
TCCATTTTATTTCTCTCAGTCCAGGAGTGCCGTATTTTGCCACTATTTATTTTCAGAATA
TGAAGCTTTTAGTCTTGATTTAATTTCTCCAATTGTAAGGCCAAGCCTCTAGATGCTGAG
ACTTATTAACTGGTTGAAACCCAGTATAATCTGTAGAGCCTCCAGGGTTCCAGAATTTGG
AGTTACTTCTCTGGCCTTCAGAGCTGTTTGTATATATGTGTATAATTATGTATAAAAGCT
TCATTTTAAAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55731316|emb|CAH92372.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55731316|emb|CAH92372.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               402-561, - strand, RNAz p=0.840923

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               402-561, - strand, RNAz p=0.840923

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               100-209, gnl|bosTau2|chr10 (61040740-61040631)
               

               
               100-209, gnl|canFam2|chr8 (50687874-50687773)
               

               
               100-209, gnl|dasNov1|scaffold_122825 (4881-4760)
               

               
               100-209, gnl|echTel1|scaffold_320024 (12407-12298)
               

               
               100-209, gnl|galGal2|chr5 (34784080-34784163)
               

               
               100-209, gnl|Hg17|chr14 (74030500-74030608)
               

               
               100-209, gnl|hg17|chr22 (25365695-25365794)
               

               
               100-209, gnl|loxAfr1|scaffold_11993 (53981-54090)
               

               
               100-209, gnl|mm7|chr12 (82773974-82773868)
               

               
               100-209, gnl|Mm7|chr12 (82773864-82773973)
               

               
               100-209, gnl|monDom2|scaffold_8 (60228566-60228648)
               

               
               100-209, gnl|oryCun1|scaffold_198977 (91540-91435)
               

               
               100-209, gnl|panTro1|chr23 (25448358-25448458)
               

               
               100-209, gnl|rheMac2|chr10 (70479603-70479705)
               

               
               100-209, gnl|rn3|chr14 (72889478-72889367)
               


               
               323-852, gnl|bosTau2|chr10 (61039959-61039432)
               

               
               323-852, gnl|Hg17|chr14 (74031279-74031821)
               

               
               323-852, gnl|Mm7|chr12 (82774836-82775382)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               100-209, gnl|bosTau2|chr10 (61040740-61040631)
               

               
               100-209, gnl|canFam2|chr8 (50687874-50687773)
               

               
               100-209, gnl|dasNov1|scaffold_122825 (4881-4760)
               

               
               100-209, gnl|echTel1|scaffold_320024 (12407-12298)
               

               
               100-209, gnl|galGal2|chr5 (34784080-34784163)
               

               
               100-209, gnl|Hg17|chr14 (74030500-74030608)
               

               
               100-209, gnl|hg17|chr22 (25365695-25365794)
               

               
               100-209, gnl|loxAfr1|scaffold_11993 (53981-54090)
               

               
               100-209, gnl|mm7|chr12 (82773974-82773868)
               

               
               100-209, gnl|Mm7|chr12 (82773864-82773973)
               

               
               100-209, gnl|monDom2|scaffold_8 (60228566-60228648)
               

               
               100-209, gnl|oryCun1|scaffold_198977 (91540-91435)
               

               
               100-209, gnl|panTro1|chr23 (25448358-25448458)
               

               
               100-209, gnl|rheMac2|chr10 (70479603-70479705)
               

               
               100-209, gnl|rn3|chr14 (72889478-72889367)
               


               
               323-852, gnl|bosTau2|chr10 (61039959-61039432)
               

               
               323-852, gnl|Hg17|chr14 (74031279-74031821)
               

               
               323-852, gnl|Mm7|chr12 (82774836-82775382)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               cje (0.330469)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               thg (0.126791)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.330469)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               thg (0.126791)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	100-209, gnl\|bosTau2\|chr10 (61040740-61040631)
	100-209, gnl\|canFam2\|chr8 (50687874-50687773)
	100-209, gnl\|dasNov1\|scaffold_122825 (4881-4760)
	100-209, gnl\|echTel1\|scaffold_320024 (12407-12298)
	100-209, gnl\|galGal2\|chr5 (34784080-34784163)
	100-209, gnl\|Hg17\|chr14 (74030500-74030608)
	100-209, gnl\|hg17\|chr22 (25365695-25365794)
	100-209, gnl\|loxAfr1\|scaffold_11993 (53981-54090)
	100-209, gnl\|mm7\|chr12 (82773974-82773868)
	100-209, gnl\|Mm7\|chr12 (82773864-82773973)
	100-209, gnl\|monDom2\|scaffold_8 (60228566-60228648)
	100-209, gnl\|oryCun1\|scaffold_198977 (91540-91435)
	100-209, gnl\|panTro1\|chr23 (25448358-25448458)
	100-209, gnl\|rheMac2\|chr10 (70479603-70479705)
	100-209, gnl\|rn3\|chr14 (72889478-72889367)

	323-852, gnl\|bosTau2\|chr10 (61039959-61039432)
	323-852, gnl\|Hg17\|chr14 (74031279-74031821)
	323-852, gnl\|Mm7\|chr12 (82774836-82775382)

	cje (0.330469)
	fcc (0.197785)
	eye (0.170503)
	nje (0.16592)
	mga (0.160205)
	thg (0.126791)
	med (0.116252)
	jej (0.0989218)
	eje (0.0988338)