Non-Coding RNA Search

Ss1.1-Pig4-TMW8052P08.3

Sequence:


               
               CTAATTATGTTATTTGGAAAGATTTTAAGAATCTGAACCTAAGAAGATTTCCAAATTTGA
AGAGCTAGGACAGCAGAAGTGCATCATCCTAAAATGTGTAGATCTAAGTAGCTTATACAC
TACAGAGCAGTTTGTCTCTTAGAAAGTAATTCAGGAGTAGATGACTTTGGGATGTAATAT
CCTGAACCTTTTTTGGAGCGGGGTGGGTGGGTGGATATGAAGTTGACACAAAGGATGGAC
AAGGCCCTTTTAGTTGATTAGCATTTTTCATATATATTTTTTTTTGTTCTGTTTGTCAGT
TCATTTCTGTGTGTTAACTCTACAAAGTACTTAGTTTTTAGTGACTTTAAAAGTGTTACT
AGTTTGGAGAAGTATTTTAGTATAAAAACTATTGATTTAGTTGATGGCTTAACCATTCCC
TATTAAGAGTTAGTTGAGTCAAAAATTATGACAGTTTGATCCTAATTTTCCCCATATTTG
ACTTAAAAACACTGACACCTTGTATACTCAAAAGTCTAGGAACATTAAGACTTGTCAGTC
ATAAAACCTGAGCTAGCCAATACAAATACCAGTACCTATGAAATTTAATTTTGCTCTATT
TTCGGAAATGTTAAGAATGTACCCTTACTAGATACTGGAATGCTTGCGCAAAGTCTTCAA
ATTGTAATTTTTTGCAGGGAGCAGTCCATAACATCTTGTAATAGACTGTCACAACTACTG
AAAATTTAGTCAGAAGCATGATTTTGCTAAAACTGGTTTTATGACTGTAACCTTGACCAC
ATGGAACCAGGGCCTCGTCTGTAAGCCCACATGATAAGAAAGTTGCACACTTTATTCCAA
ACAAGTATTGGTTTGTCTGGTATCTTTAGAGGCTTACTCTGTTGAAGTGATTCTCAGCTA
GACATTATGTGTGTTGTAACTTTGATAAATATTTCCACTTTTGTTATTTATTAGTGTTAT
CTTTTTTTTGAAGTGTCAAATCTTGTGACTATTTAAAATAAAATATAATTTAAGGTGAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAATTATGTTATTTGGAAAGATTTTAAGAATCTGAACCTAAGAAGATTTCCAAATTTGA
AGAGCTAGGACAGCAGAAGTGCATCATCCTAAAATGTGTAGATCTAAGTAGCTTATACAC
TACAGAGCAGTTTGTCTCTTAGAAAGTAATTCAGGAGTAGATGACTTTGGGATGTAATAT
CCTGAACCTTTTTTGGAGCGGGGTGGGTGGGTGGATATGAAGTTGACACAAAGGATGGAC
AAGGCCCTTTTAGTTGATTAGCATTTTTCATATATATTTTTTTTTGTTCTGTTTGTCAGT
TCATTTCTGTGTGTTAACTCTACAAAGTACTTAGTTTTTAGTGACTTTAAAAGTGTTACT
AGTTTGGAGAAGTATTTTAGTATAAAAACTATTGATTTAGTTGATGGCTTAACCATTCCC
TATTAAGAGTTAGTTGAGTCAAAAATTATGACAGTTTGATCCTAATTTTCCCCATATTTG
ACTTAAAAACACTGACACCTTGTATACTCAAAAGTCTAGGAACATTAAGACTTGTCAGTC
ATAAAACCTGAGCTAGCCAATACAAATACCAGTACCTATGAAATTTAATTTTGCTCTATT
TTCGGAAATGTTAAGAATGTACCCTTACTAGATACTGGAATGCTTGCGCAAAGTCTTCAA
ATTGTAATTTTTTGCAGGGAGCAGTCCATAACATCTTGTAATAGACTGTCACAACTACTG
AAAATTTAGTCAGAAGCATGATTTTGCTAAAACTGGTTTTATGACTGTAACCTTGACCAC
ATGGAACCAGGGCCTCGTCTGTAAGCCCACATGATAAGAAAGTTGCACACTTTATTCCAA
ACAAGTATTGGTTTGTCTGGTATCTTTAGAGGCTTACTCTGTTGAAGTGATTCTCAGCTA
GACATTATGTGTGTTGTAACTTTGATAAATATTTCCACTTTTGTTATTTATTAGTGTTAT
CTTTTTTTTGAAGTGTCAAATCTTGTGACTATTTAAAATAAAATATAATTTAAGGTGAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               1-741, gnl|bosTau2|chr26 (25324847-25324103)
               

               
               1-741, gnl|Hg17|chr10 (121577386-121578392)
               


               
               853-1026, gnl|bosTau2|chr21 (19289176-19289005)
               

               
               853-1026, gnl|Hg17|chr2 (170256494-170256324)
               

               
               853-1026, gnl|Mm7|chr7 (124792724-124792878)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-741, gnl|bosTau2|chr26 (25324847-25324103)
               

               
               1-741, gnl|Hg17|chr10 (121577386-121578392)
               


               
               853-1026, gnl|bosTau2|chr21 (19289176-19289005)
               

               
               853-1026, gnl|Hg17|chr2 (170256494-170256324)
               

               
               853-1026, gnl|Mm7|chr7 (124792724-124792878)

Expressed library(ies): 34 entry(ies)

More info

Expressed library(ies): 34 entry(ies)

Help | Less info


               
               fco (1.8865)
               

               
               cbe (1.43541)
               

               
               sin (1.04969)
               

               
               ret (0.514933)
               

               
               pro (0.512033)
               

               
               ece (0.45861)
               

               
               amn (0.417711)
               

               
               fcc (0.39557)
               

               
               sug (0.381874)
               

               
               ebs (0.354904)
               

               
               ecc (0.345105)
               

               
               spc (0.340097)
               

               
               fhi (0.339155)
               

               
               sme (0.305437)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               cbr (0.255951)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 34 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (1.8865)
               

               
               cbe (1.43541)
               

               
               sin (1.04969)
               

               
               ret (0.514933)
               

               
               pro (0.512033)
               

               
               ece (0.45861)
               

               
               amn (0.417711)
               

               
               fcc (0.39557)
               

               
               sug (0.381874)
               

               
               ebs (0.354904)
               

               
               ecc (0.345105)
               

               
               spc (0.340097)
               

               
               fhi (0.339155)
               

               
               sme (0.305437)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               cbr (0.255951)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	1-741, gnl\|bosTau2\|chr26 (25324847-25324103)
	1-741, gnl\|Hg17\|chr10 (121577386-121578392)

	853-1026, gnl\|bosTau2\|chr21 (19289176-19289005)
	853-1026, gnl\|Hg17\|chr2 (170256494-170256324)
	853-1026, gnl\|Mm7\|chr7 (124792724-124792878)

	fco (1.8865)
	cbe (1.43541)
	sin (1.04969)
	ret (0.514933)
	pro (0.512033)
	ece (0.45861)
	amn (0.417711)
	fcc (0.39557)
	sug (0.381874)
	ebs (0.354904)
	ecc (0.345105)
	spc (0.340097)
	fhi (0.339155)
	sme (0.305437)
	liv (0.292569)
	lin (0.291206)
	hyp (0.285673)
	fce (0.271592)
	ste (0.270416)
	cbr (0.255951)
	fbs (0.175346)
	rec (0.17307)
	eye (0.170503)
	nje (0.16592)
	nco (0.161734)
	tbr (0.154178)
	fat (0.147427)
	lnt (0.142308)
	lyg (0.133103)
	thg (0.126791)
	tra (0.123092)
	eru (0.120048)
	cty (0.10408)
	ldo (0.0970026)