Non-Coding RNA Search

Ss1.1-Pig4-TMW8052P09.3

Sequence:


               
               TTTTTTCTGCAGCTTTTCTTCTGTGCTTTCCTAAGGCACCTTGAACCCAACAGTACTGTG
AGATGCAGTCTTTGTGCACAGGCAAGTTGACCCCAGCAAGGAAAGTGGGCTGTGCAAGTC
CAGAGAGTCCACCCAGGTTCCCTGCAGCCTGGGGTGGCCTAGTCCACAGAGACCCCCCTT
CCAGGGCTCCTCTCCAGGGTGTGCCAGTGCTCTCAGAAAGCTGATGGGGTGGACTGACCT
CTGCTGAACTACGGTACAAGGCGGCCGTGTTGGGCAGTGAAGGGCAGAAACTAACATAAC
TTGAGCATCGGACCGTGGGCTTGGCCTTCTGCCTCTAACCTTAGATCCTAGCACTGCGAT
CCGAGTTAAGCCTGCTTCTCAGATCCCTTATCTTCAAAAGGTTTCTGAGAATGCTTAATA
ATCCTGCTCTGCCTACCTCACAGCGTTTTATTAAATGAAATACACTATCCAAGTGTTAAG
TAAATTGGGCACTTGGCTCCCAGCTCCCCAAGACAGCCAAGCTTCTGGGAGCATGAATTA
GCAGCACTTTGAAGAACACTTCGGTGCTGTGCAGTCAGTCTGGAGCTGCCCTTGGCCCCA
GGATGCAGCAGTTCTCCTCTGGGTTGACATCCTAGAGAAGCACCAGCATGTACGCAGGAG
GCAGGCTTATTGGTGACAGTAAAAACTGGGAAACCACCCAGTGCCCCCCCCAGGAGCAGG
ACCCGTTATGAAATAGCCACACAGTGGAATACAGCACAGCGGTGAAACACATGGACCAGA
GCCACATACATCAACACAGATGAACCTCTTAAGCAGCATTGGTACAAAAACCAAGTTGCA
AGACACCTACTGTACAATCCCGGTTATGCAAGTTCAGAAGCATGTGAACATAGATGTACT
TGATGGGTGCTCCCCCCCGTTTCTGACATTGTGAATGCACTAAATGCCACTTTAAAATGG
TCAATTTTATGTTATGTGAATCTCAATAAAATTTTTAAAACATGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTCTGCAGCTTTTCTTCTGTGCTTTCCTAAGGCACCTTGAACCCAACAGTACTGTG
AGATGCAGTCTTTGTGCACAGGCAAGTTGACCCCAGCAAGGAAAGTGGGCTGTGCAAGTC
CAGAGAGTCCACCCAGGTTCCCTGCAGCCTGGGGTGGCCTAGTCCACAGAGACCCCCCTT
CCAGGGCTCCTCTCCAGGGTGTGCCAGTGCTCTCAGAAAGCTGATGGGGTGGACTGACCT
CTGCTGAACTACGGTACAAGGCGGCCGTGTTGGGCAGTGAAGGGCAGAAACTAACATAAC
TTGAGCATCGGACCGTGGGCTTGGCCTTCTGCCTCTAACCTTAGATCCTAGCACTGCGAT
CCGAGTTAAGCCTGCTTCTCAGATCCCTTATCTTCAAAAGGTTTCTGAGAATGCTTAATA
ATCCTGCTCTGCCTACCTCACAGCGTTTTATTAAATGAAATACACTATCCAAGTGTTAAG
TAAATTGGGCACTTGGCTCCCAGCTCCCCAAGACAGCCAAGCTTCTGGGAGCATGAATTA
GCAGCACTTTGAAGAACACTTCGGTGCTGTGCAGTCAGTCTGGAGCTGCCCTTGGCCCCA
GGATGCAGCAGTTCTCCTCTGGGTTGACATCCTAGAGAAGCACCAGCATGTACGCAGGAG
GCAGGCTTATTGGTGACAGTAAAAACTGGGAAACCACCCAGTGCCCCCCCCAGGAGCAGG
ACCCGTTATGAAATAGCCACACAGTGGAATACAGCACAGCGGTGAAACACATGGACCAGA
GCCACATACATCAACACAGATGAACCTCTTAAGCAGCATTGGTACAAAAACCAAGTTGCA
AGACACCTACTGTACAATCCCGGTTATGCAAGTTCAGAAGCATGTGAACATAGATGTACT
TGATGGGTGCTCCCCCCCGTTTCTGACATTGTGAATGCACTAAATGCCACTTTAAAATGG
TCAATTTTATGTTATGTGAATCTCAATAAAATTTTTAAAACATGAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               132-234, - strand, RNAz p=0.84413
               

               
               606-723, + strand, RNAz p=0.671142

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               132-234, - strand, RNAz p=0.84413
               

               
               606-723, + strand, RNAz p=0.671142

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               16-1009, gnl|bosTau2|chr18 (5920878-5919885)
               

               
               16-1009, gnl|Hg17|chr16 (73878910-73875902)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-1009, gnl|bosTau2|chr18 (5920878-5919885)
               

               
               16-1009, gnl|Hg17|chr16 (73878910-73875902)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fhi (0.339155)
               

               
               nms (0.213858)
               

               
               ill (0.175593)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)
               

               
               nms (0.213858)
               

               
               ill (0.175593)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	132-234, - strand, RNAz p=0.84413
	606-723, + strand, RNAz p=0.671142

	16-1009, gnl\|bosTau2\|chr18 (5920878-5919885)
	16-1009, gnl\|Hg17\|chr16 (73878910-73875902)

	fhi (0.339155)
	nms (0.213858)
	ill (0.175593)
	cag (0.151194)
	hyp (0.142837)
	eru (0.120048)
	spc (0.113366)
	eje (0.0988338)