Ss1.1-Pig4-TMW8052P19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGGAGGCAGGTGGGCGCCAGGCCCGGGCTCGGGAGCCAGGCAGCCGAGGTAGAGAGGC GGGCTCCGGCGGGCCGGGCGGCCGGCACCATGACGCTGTTCCACTTTGGGAACTGCTTCG CCTTGGCCTACTTCCCCTACTTCATCACCTACAAGTGCAGCGGCCTGTCCGAGTATAATG CCTTCTGGAAGTGCGTGCAGGCCGGGGTCACCTACCTCTTCGTGCAGCTGTGCAAGATGC TGTTCCTGGCCACTTTCTTTCCTACCTGGGAAGGCGGCATCTATGACTTCATTGGGGAGT TCATGAAGGCCAGCGTGGATGTGGCAGACCTGATAGGCCTAAACCTTGTCATGTCCCGGA ATGCCGGCAAGGGGGAATACAAGATCATGGTTGCTGCCCTGGGCTGGGCCACCGCCGAGC TCATTATGTCCCGCTGCATCCCCCTCTGGGTTGGAGCTCGGGGCATTGAGTTTGACTGGA AATACATCCAGATGAGCATTGACTCCAACATCAGTCTGGTCCATTACATCGTCGCATCTG CCCAGGTGTGGATGATAACACGCTACGACCTGTACCACACTTTCCGGCCAGCAGTCCTCC TCCTGATGTTCCTTAGCGTCTACAAGGCCTTTGTCATGGAGACGTTCGTCCACCTCTGTT CCCTGGGCAGCTGGACAGCACTGCTGGCCCGAGCAGTGGTGACGGGACTGCTGGCTCTCA GCACCCTGGCCCTGTATGTCGCCGTTGTCAACGTGCACTCCTAGGCTTGGTGTCCCAGAA TTTCACATACCTTCTCCCTGTCTCCAGGTTTCAGTGAAGTAAACAGTATTTGGAAAGTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGGAGGCAGGTGGGCGCCAGGCCCGGGCTCGGGAGCCAGGCAGCCGAGGTAGAGAGGC GGGCTCCGGCGGGCCGGGCGGCCGGCACCATGACGCTGTTCCACTTTGGGAACTGCTTCG CCTTGGCCTACTTCCCCTACTTCATCACCTACAAGTGCAGCGGCCTGTCCGAGTATAATG CCTTCTGGAAGTGCGTGCAGGCCGGGGTCACCTACCTCTTCGTGCAGCTGTGCAAGATGC TGTTCCTGGCCACTTTCTTTCCTACCTGGGAAGGCGGCATCTATGACTTCATTGGGGAGT TCATGAAGGCCAGCGTGGATGTGGCAGACCTGATAGGCCTAAACCTTGTCATGTCCCGGA ATGCCGGCAAGGGGGAATACAAGATCATGGTTGCTGCCCTGGGCTGGGCCACCGCCGAGC TCATTATGTCCCGCTGCATCCCCCTCTGGGTTGGAGCTCGGGGCATTGAGTTTGACTGGA AATACATCCAGATGAGCATTGACTCCAACATCAGTCTGGTCCATTACATCGTCGCATCTG CCCAGGTGTGGATGATAACACGCTACGACCTGTACCACACTTTCCGGCCAGCAGTCCTCC TCCTGATGTTCCTTAGCGTCTACAAGGCCTTTGTCATGGAGACGTTCGTCCACCTCTGTT CCCTGGGCAGCTGGACAGCACTGCTGGCCCGAGCAGTGGTGACGGGACTGCTGGCTCTCA GCACCCTGGCCCTGTATGTCGCCGTTGTCAACGTGCACTCCTAGGCTTGGTGTCCCAGAA TTTCACATACCTTCTCCCTGTCTCCAGGTTTCAGTGAAGTAAACAGTATTTGGAAAGTTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-168, gnl|bosTau2|chr18 (39572183-39572016) | |
| 1-168, gnl|Hg17|chr19 (40728364-40728560) | |
| 1-168, gnl|Mm7|chr7 (27667283-27667104) | |
| 296-436, gnl|bosTau2|chr18 (39571169-39571029) | |
| 296-436, gnl|canFam2|chr1 (120028931-120028777) | |
| 296-436, gnl|danRer3|chr16 (48618864-48619018) | |
| 296-436, gnl|dasNov1|scaffold_12214 (37237-37386) | |
| 296-436, gnl|echTel1|scaffold_323482 (10849-10687) | |
| 296-436, gnl|fr1|chrUn (119805288-119805148) | |
| 296-436, gnl|hg17|chr19 (40729399-40729553) | |
| 296-436, gnl|Hg17|chr19 (40729413-40729553) | |
| 296-436, gnl|mm7|chr7 (27666347-27666193) | |
| 296-436, gnl|Mm7|chr7 (27666331-27666191) | |
| 296-436, gnl|monDom2|scaffold_139 (1707219-1707386) | |
| 296-436, gnl|oryCun1|scaffold_206110 (11358-11204) | |
| 296-436, gnl|rheMac2|chr19 (42039625-42039779) | |
| 296-436, gnl|rn3|chr1 (85850672-85850518) | |
| 296-436, gnl|tetNig1|chr8 (3135633-3135777) | |
| 296-436, gnl|xenTro1|scaffold_1275 (39799-39648) | |
| 641-840, gnl|bosTau2|chr18 (39570512-39570314) | |
| 641-840, gnl|Hg17|chr19 (40730066-40730269) | |
| 641-840, gnl|Mm7|chr7 (27665665-27665462) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-168, gnl|bosTau2|chr18 (39572183-39572016) | |
| 1-168, gnl|Hg17|chr19 (40728364-40728560) | |
| 1-168, gnl|Mm7|chr7 (27667283-27667104) | |
| 296-436, gnl|bosTau2|chr18 (39571169-39571029) | |
| 296-436, gnl|canFam2|chr1 (120028931-120028777) | |
| 296-436, gnl|danRer3|chr16 (48618864-48619018) | |
| 296-436, gnl|dasNov1|scaffold_12214 (37237-37386) | |
| 296-436, gnl|echTel1|scaffold_323482 (10849-10687) | |
| 296-436, gnl|fr1|chrUn (119805288-119805148) | |
| 296-436, gnl|hg17|chr19 (40729399-40729553) | |
| 296-436, gnl|Hg17|chr19 (40729413-40729553) | |
| 296-436, gnl|mm7|chr7 (27666347-27666193) | |
| 296-436, gnl|Mm7|chr7 (27666331-27666191) | |
| 296-436, gnl|monDom2|scaffold_139 (1707219-1707386) | |
| 296-436, gnl|oryCun1|scaffold_206110 (11358-11204) | |
| 296-436, gnl|rheMac2|chr19 (42039625-42039779) | |
| 296-436, gnl|rn3|chr1 (85850672-85850518) | |
| 296-436, gnl|tetNig1|chr8 (3135633-3135777) | |
| 296-436, gnl|xenTro1|scaffold_1275 (39799-39648) | |
| 641-840, gnl|bosTau2|chr18 (39570512-39570314) | |
| 641-840, gnl|Hg17|chr19 (40730066-40730269) | |
| 641-840, gnl|Mm7|chr7 (27665665-27665462) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| fce (0.543183) | |
| fhi (0.508733) | |
| csp (0.483559) | |
| ebs (0.473205) | |
| med (0.465008) | |
| ece (0.45861) | |
| cag (0.453583) | |
| hyp (0.42851) | |
| mas (0.42061) | |
| cov (0.396458) | |
| col (0.390016) | |
| ute (0.265569) | |
| nms (0.213858) | |
| hea (0.204499) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| nje (0.16592) | |
| eli (0.151814) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| che (0.136314) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ecc (0.115035) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.543183) | |
| fhi (0.508733) | |
| csp (0.483559) | |
| ebs (0.473205) | |
| med (0.465008) | |
| ece (0.45861) | |
| cag (0.453583) | |
| hyp (0.42851) | |
| mas (0.42061) | |
| cov (0.396458) | |
| col (0.390016) | |
| ute (0.265569) | |
| nms (0.213858) | |
| hea (0.204499) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| nje (0.16592) | |
| eli (0.151814) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| che (0.136314) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ecc (0.115035) |