Non-Coding RNA Search

Ss1.1-Pig4-TMW8052P22.3

Sequence:


               
               TTAAAAGCATCGGATTCAGCAGAAGCAGTTGAGGCTTTTCCAACTAACCCCGCAACAGCA
ACATCTAATCAGAGAAGATCATCAAAACCAGAAGCTGTGGGATGAAGTTCTTGCATCGCT
TGTGGAAGGACCAAATTTTCTGAAAAAACTGGAACAATCTTTCATGTGTGTCTGCTGCCA
GGAGCTAGTTTACCAACCTGTAACAACAGATTGCCTCCACAATGTCTGTAAAGATTGCTT
ACAGCGCTCCTTTAAGGCTCAAGTGTTCTCCTGCCCTGCTTGCCGGCATGATCTTGGCCA
GAATTACATCATGATTCCCAATAAGATTCTGCAGACTCTACTTGACCTTTTCTTCCCTGG
CTACAGCAAAGGACGATGATCTGTCTGCTTCTACTGTGTTGCTGCCAGTGGCTTTTTGGA
CAAATAATCGAAAATGGTTAGGGGTGGGGGAGGGGTGGAAGCAATGGTGGACCACATCTC
TCACATTCTGAAGCAGCTAATCCTCTTTCCTACGTAGCCATCATCTTGTGTGTGTAGTAA
GAGGCCCATTTCTCAGCTGTCTTTTAAATATCAAAAGGTAGTTTTGTCAGTAACAACCAG
TTTTAATGAGTAAAAAGTCAAAGCCTCAGCTCTAGTTGATATCCAAGTTATGATTTATTT
TGCAACTACCTCAGGACAGAAAAGATTTATGGGGATTTTTTTAAATCATTGAATAATTAG
TTAAATGAAATTTTAGCTACACACTGCCTCCCTAATATTAGTTGTGCCTGGTTCATGTAA
TTTGATTTTACAAAAAGGAAGGGACACTTGAGATTGTTGAAATGAACACAGCTTCTATAG
TGTGCATAATACATTTTTAATGTCTTCTTCCATTACATTGTGTGTTTTGCAAGAACAGAT
TCATTTTTTTAGTCGATTTTGTGAGCTCCATTGTGCTTTTTCCTGGTGTTTTATGCAAGT
TGACTACTAATGAAAACAATATGAATGCATTGTTGCTGCATTAGTGTAATGTGGTGTGGT
TTTGCACTTAAAAGAGGTATTCAGATCTAGTTGTAAATGTTCTTGAAAAGCCTCTTCTGT
TCTAGTCAAACTGCTTTTAGTGAGTCTCACCAGTGGTTTTACATCTGCAGAACATTTGAG
GACTGGGCTGACTTTTTGAGAGGATTGAAATTGCTTCATATTGTGATCCTAAATTTTATA
TTCACTATATTCCCTAAAGTATACCTTAATAAATATTTTATGACTAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAAAGCATCGGATTCAGCAGAAGCAGTTGAGGCTTTTCCAACTAACCCCGCAACAGCA
ACATCTAATCAGAGAAGATCATCAAAACCAGAAGCTGTGGGATGAAGTTCTTGCATCGCT
TGTGGAAGGACCAAATTTTCTGAAAAAACTGGAACAATCTTTCATGTGTGTCTGCTGCCA
GGAGCTAGTTTACCAACCTGTAACAACAGATTGCCTCCACAATGTCTGTAAAGATTGCTT
ACAGCGCTCCTTTAAGGCTCAAGTGTTCTCCTGCCCTGCTTGCCGGCATGATCTTGGCCA
GAATTACATCATGATTCCCAATAAGATTCTGCAGACTCTACTTGACCTTTTCTTCCCTGG
CTACAGCAAAGGACGATGATCTGTCTGCTTCTACTGTGTTGCTGCCAGTGGCTTTTTGGA
CAAATAATCGAAAATGGTTAGGGGTGGGGGAGGGGTGGAAGCAATGGTGGACCACATCTC
TCACATTCTGAAGCAGCTAATCCTCTTTCCTACGTAGCCATCATCTTGTGTGTGTAGTAA
GAGGCCCATTTCTCAGCTGTCTTTTAAATATCAAAAGGTAGTTTTGTCAGTAACAACCAG
TTTTAATGAGTAAAAAGTCAAAGCCTCAGCTCTAGTTGATATCCAAGTTATGATTTATTT
TGCAACTACCTCAGGACAGAAAAGATTTATGGGGATTTTTTTAAATCATTGAATAATTAG
TTAAATGAAATTTTAGCTACACACTGCCTCCCTAATATTAGTTGTGCCTGGTTCATGTAA
TTTGATTTTACAAAAAGGAAGGGACACTTGAGATTGTTGAAATGAACACAGCTTCTATAG
TGTGCATAATACATTTTTAATGTCTTCTTCCATTACATTGTGTGTTTTGCAAGAACAGAT
TCATTTTTTTAGTCGATTTTGTGAGCTCCATTGTGCTTTTTCCTGGTGTTTTATGCAAGT
TGACTACTAATGAAAACAATATGAATGCATTGTTGCTGCATTAGTGTAATGTGGTGTGGT
TTTGCACTTAAAAGAGGTATTCAGATCTAGTTGTAAATGTTCTTGAAAAGCCTCTTCTGT
TCTAGTCAAACTGCTTTTAGTGAGTCTCACCAGTGGTTTTACATCTGCAGAACATTTGAG
GACTGGGCTGACTTTTTGAGAGGATTGAAATTGCTTCATATTGTGATCCTAAATTTTATA
TTCACTATATTCCCTAAAGTATACCTTAATAAATATTTTATGACTAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|52545637|emb|CAH56383.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|52545637|emb|CAH56383.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               4-133, gnl|bosTau2|chr8 (19101144-19101016)
               

               
               4-133, gnl|Hg17|chr9 (6490581-6490709)
               

               
               4-133, gnl|Mm7|chr19 (29789059-29789187)
               


               
               233-1248, gnl|bosTau2|chr8 (19095612-19094598)
               

               
               233-1248, gnl|Hg17|chr9 (6496033-6497050)
               

               
               233-1248, gnl|Mm7|chr19 (29792562-29793567)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-133, gnl|bosTau2|chr8 (19101144-19101016)
               

               
               4-133, gnl|Hg17|chr9 (6490581-6490709)
               

               
               4-133, gnl|Mm7|chr19 (29789059-29789187)
               


               
               233-1248, gnl|bosTau2|chr8 (19095612-19094598)
               

               
               233-1248, gnl|Hg17|chr9 (6496033-6497050)
               

               
               233-1248, gnl|Mm7|chr19 (29792562-29793567)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               kid (0.259471)
               

               
               col (0.195008)
               

               
               fat (0.147427)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.259471)
               

               
               col (0.195008)
               

               
               fat (0.147427)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

	4-133, gnl\|bosTau2\|chr8 (19101144-19101016)
	4-133, gnl\|Hg17\|chr9 (6490581-6490709)
	4-133, gnl\|Mm7\|chr19 (29789059-29789187)

	233-1248, gnl\|bosTau2\|chr8 (19095612-19094598)
	233-1248, gnl\|Hg17\|chr9 (6496033-6497050)
	233-1248, gnl\|Mm7\|chr19 (29792562-29793567)

	kid (0.259471)
	col (0.195008)
	fat (0.147427)
	pgl (0.118483)
	cty (0.10408)