Non-Coding RNA Search

Ss1.1-Pig4-TMW8053A03.3

Sequence:


               
               ATCAGTGTCAGTACTCCTGTCTTTGTACCAATGACGACTCATGTGCTGCTTCATCGGATG
AGTGGGAAAGGACTAGCGGCCCATTATTCCTTTCCAAGACAGCCTTGCATTTTTGGTGAC
AAGATGGTCTCTGTGCAAATAACATTGAATAATACCACTGATCGGAAGATAGAAAATATC
CACATAGGGGAGAAGAAACTTCCTATGGGCATGCAAATGCATGTTTTTAATCCAATAGGA
TCTCTTGAGCCTGGGGGATCCATTACTGTTTCAATGGGTATTGACTTTTGTGATTCCACT
CAGACTGCCAGTTTGCAGTTGTGTACCAAGGATGATTGCTTCAGTGTTAACATTCAGCCC
CCTGTTGGAGAACTGCTTTTACCTGTGGCCATGTCAGAGAAAGATTTTAAGAAAGAGCAA
GGAAGGCTAACAGGAATGAATGAAACCTCTACTCTAATTATTGCTGCACCGCAGAATTTT
ACTTCCTCTGTGATCCTTCAGAAGGTTGTAAACGTAGCCAACTTAGGGGTAGTTCCTTCT
GGTCAAGATAATGTACACAGGTTTGCAGCTAAAACTGTGCACAGTGGGTCATTGATGCTA
GTCACCGTGGAACTGAAGGAAGGCTCTACAGCACAGCTTATCATAAACACTGAGAAAACT
GTGATTGGTTCTGTTCTGCTGCGGGAGCTGAAGCCTGTCCTGTCCCAGGGGTAACCTGCC
TACATCTGGGCTTCAGAATCTGGCACACAGCGAAAGTGCCTGGCATCCACTACTGCTGCC
TTTCATTTATAATAATAGCCCTTCCATCTGGCAGTGGGGGGAAGAATACACTCTTGACAT
TCTTGCCTCCTGCTTTAGAATGCTAGTGTGTATCTATCATGTATGCAACACTTTCCCCCT
TCTCGCTTTGCTAACCAAAGAACATATATTTTACTGTCAGTTATCTCAACTCTTAAATCC
ATGTGGCATTTTCTCTGTCCTGCTACTTCTTCTGGCCTTCTCAGCTTTCCTTCTCTTTTT
CAACAATGATGGACATGGCTTGGATATTTAAAGTTCACTGGAAATCATCTCTCCTCCCAC
TGTAAGCAAAAATCAGCCTAGAAATCATCTAAATGGCCTCTCAACTTGGTATGTGAAAAT
GGGAAAGCATGCTTTTTAGAATTCAATTCACAAACAACAATTTGTCTGCAATATTTTGTT
CTGCGAATTTCCTGGGGTTGTAATTGCTTATGGACAACTGTCATCATGAAATTATCCCTA
AATAATAAATAAACTAGCATATAAATAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCAGTGTCAGTACTCCTGTCTTTGTACCAATGACGACTCATGTGCTGCTTCATCGGATG
AGTGGGAAAGGACTAGCGGCCCATTATTCCTTTCCAAGACAGCCTTGCATTTTTGGTGAC
AAGATGGTCTCTGTGCAAATAACATTGAATAATACCACTGATCGGAAGATAGAAAATATC
CACATAGGGGAGAAGAAACTTCCTATGGGCATGCAAATGCATGTTTTTAATCCAATAGGA
TCTCTTGAGCCTGGGGGATCCATTACTGTTTCAATGGGTATTGACTTTTGTGATTCCACT
CAGACTGCCAGTTTGCAGTTGTGTACCAAGGATGATTGCTTCAGTGTTAACATTCAGCCC
CCTGTTGGAGAACTGCTTTTACCTGTGGCCATGTCAGAGAAAGATTTTAAGAAAGAGCAA
GGAAGGCTAACAGGAATGAATGAAACCTCTACTCTAATTATTGCTGCACCGCAGAATTTT
ACTTCCTCTGTGATCCTTCAGAAGGTTGTAAACGTAGCCAACTTAGGGGTAGTTCCTTCT
GGTCAAGATAATGTACACAGGTTTGCAGCTAAAACTGTGCACAGTGGGTCATTGATGCTA
GTCACCGTGGAACTGAAGGAAGGCTCTACAGCACAGCTTATCATAAACACTGAGAAAACT
GTGATTGGTTCTGTTCTGCTGCGGGAGCTGAAGCCTGTCCTGTCCCAGGGGTAACCTGCC
TACATCTGGGCTTCAGAATCTGGCACACAGCGAAAGTGCCTGGCATCCACTACTGCTGCC
TTTCATTTATAATAATAGCCCTTCCATCTGGCAGTGGGGGGAAGAATACACTCTTGACAT
TCTTGCCTCCTGCTTTAGAATGCTAGTGTGTATCTATCATGTATGCAACACTTTCCCCCT
TCTCGCTTTGCTAACCAAAGAACATATATTTTACTGTCAGTTATCTCAACTCTTAAATCC
ATGTGGCATTTTCTCTGTCCTGCTACTTCTTCTGGCCTTCTCAGCTTTCCTTCTCTTTTT
CAACAATGATGGACATGGCTTGGATATTTAAAGTTCACTGGAAATCATCTCTCCTCCCAC
TGTAAGCAAAAATCAGCCTAGAAATCATCTAAATGGCCTCTCAACTTGGTATGTGAAAAT
GGGAAAGCATGCTTTTTAGAATTCAATTCACAAACAACAATTTGTCTGCAATATTTTGTT
CTGCGAATTTCCTGGGGTTGTAATTGCTTATGGACAACTGTCATCATGAAATTATCCCTA
AATAATAAATAAACTAGCATATAAATAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61809215|ref|XP_611792.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61809215|ref|XP_611792.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               122-916, - strand, RNAz p=0.633313

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               122-916, - strand, RNAz p=0.633313

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               7-239, gnl|bosTau2|chr10 (3109920-3109688)
               

               
               7-239, gnl|Hg17|chr5 (77370854-77370622)
               

               
               7-239, gnl|Mm7|chr13 (91591156-91591388)
               


               
               558-1288, gnl|bosTau2|chr10 (3052744-3052010)
               

               
               558-1288, gnl|Hg17|chr5 (77334638-77333908)
               

               
               558-1288, gnl|Mm7|chr13 (91628593-91629305)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-239, gnl|bosTau2|chr10 (3109920-3109688)
               

               
               7-239, gnl|Hg17|chr5 (77370854-77370622)
               

               
               7-239, gnl|Mm7|chr13 (91591156-91591388)
               


               
               558-1288, gnl|bosTau2|chr10 (3052744-3052010)
               

               
               558-1288, gnl|Hg17|chr5 (77334638-77333908)
               

               
               558-1288, gnl|Mm7|chr13 (91628593-91629305)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               fty (0.527519)
               

               
               pro (0.512033)
               

               
               elu (0.385356)
               

               
               sag (0.36543)
               

               
               pla (0.267344)
               

               
               fcc (0.197785)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.527519)
               

               
               pro (0.512033)
               

               
               elu (0.385356)
               

               
               sag (0.36543)
               

               
               pla (0.267344)
               

               
               fcc (0.197785)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	7-239, gnl\|bosTau2\|chr10 (3109920-3109688)
	7-239, gnl\|Hg17\|chr5 (77370854-77370622)
	7-239, gnl\|Mm7\|chr13 (91591156-91591388)

	558-1288, gnl\|bosTau2\|chr10 (3052744-3052010)
	558-1288, gnl\|Hg17\|chr5 (77334638-77333908)
	558-1288, gnl\|Mm7\|chr13 (91628593-91629305)

	fty (0.527519)
	pro (0.512033)
	elu (0.385356)
	sag (0.36543)
	pla (0.267344)
	fcc (0.197785)
	rec (0.17307)
	tbr (0.154178)
	liv (0.146284)
	ste (0.135208)
	ova (0.129132)
	bla (0.124347)
	ebs (0.118301)
	cty (0.10408)
	ldo (0.0970026)