Ss1.1-Pig4-TMW8053A05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAACTGGATGGCCGTCAGCTCAAGGTTGACTTGGCAGTGACCCGTGATGAGGCTGCAAA GCTCCGGACAAAGAAGGTGAAGAAGCCGACGGGAACTCGGAACCTCTATCTGGCCCGAGA AGGCTTGATTCGTGCTGGGACGAAGGCTGCAGAGGGTGTGAGTGCTGCTGATATGGCCAA AAGAGAACGATTTGAGCTGCTGAAGCATCAGAAACTCAAGGACCAGAATATCTTTGTCTC CCGGACCAGGCTGTGCCTGCATAATCTCCCAAAGGCCGTGGATGACAAGCAGCTCAGAAA GCTGCTGCTGAGTTCCACAAGAGGGGAGAAGGGAGTGCGCATCAAGGAGTGTCGGGTGAT GAGAGACCTCAAAGGAGCTCATGGGAAAGTTAAGGGTCAGTCCTTGGGCTACGCCTTTGC AGAGTTCCAGGAGCACGAGCATGCCCTGGCCGCCCTGCGCCACATCAACAACAATCCAGA AATCTTTGGGCCTCAGAAGAGACCGATAGTGGAGTTCTCTTTGGAAGATCGAAGGAAACT TAAAATAAAGGAAATGAGGATGCAGCGCAGCCTGCAAAAAGTGAAATCCAAGTCTGCAAC TGGTGAGCCCCAGCAGGAGCCACCAGAGATGGGGAAAAAACAGCAACAGAAAGCAGCTCA GAACCACACGCAAGAGCAAAGCAAGGCCCCCGTGGAGCAGAAGGGGAAGGTGGGCTCCGT ATCGTGGACAGGGTTCCAGACCAAGGCCGAAGTGGAGCACGTGGAGCTGTCTGATGGAAA GAAGAGAAGAAAGGTCCTGGCGCTCCCCTCTCACCGAGGCCCCAAAATCAGGTTGCGGGA CAAAGGGAAGATGAAGTCTCTCCCTCCCAAGAAGCCAAAGCCCCAGGTAAACCATTGGAA GCAAGAGAAGCAGAAATTATCTTCCAAGCAGGTGCCTAGGAAAAAAGCTCAGGGAAATAA GACAGAAATTCGCTTCAACCAGCTGGTCGAACAATATAAGCAGAAGTTATTGGGACCTTC TAAAGGAGCTCCTCTTGCAAAGAGGAGCAAATGGTTCGACAGTTGATAATGCCAACGGAC TGGATAAGGAGCTGGATTGTGTGCTTCTTGGTGAAGCCCCCCTCCCCCCATGTCGTTTAT TGCGGGAAAGAAACCACTGAGTGCCCTGCCACTTTGTTGGGGGCCCCTCTGGGCCGTGCG CATCTGAACTTGCGTCTCTCCCTGGTGTGCGGTTAGTTAACCAAGAAGAGGAATATCAGA AAGACATCATGATGCTTCTTGCATGTTTCGTGCGAAGGTGTGTCTATAATTCTTACGCAT TTTAATTCTTTGTTTCTCAAATGGTAACAGTTATAAAAAGCATTCTTTAGTGCTGAATTT TTAAGATGTATATTTTGTTAAGGATCTTATTTAAATGAGATATTTTATGGCTTTTCGAGT AACAGACTCATTTCTAACATGTGAATCCTTTATTATTTATAAATGTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAACTGGATGGCCGTCAGCTCAAGGTTGACTTGGCAGTGACCCGTGATGAGGCTGCAAA GCTCCGGACAAAGAAGGTGAAGAAGCCGACGGGAACTCGGAACCTCTATCTGGCCCGAGA AGGCTTGATTCGTGCTGGGACGAAGGCTGCAGAGGGTGTGAGTGCTGCTGATATGGCCAA AAGAGAACGATTTGAGCTGCTGAAGCATCAGAAACTCAAGGACCAGAATATCTTTGTCTC CCGGACCAGGCTGTGCCTGCATAATCTCCCAAAGGCCGTGGATGACAAGCAGCTCAGAAA GCTGCTGCTGAGTTCCACAAGAGGGGAGAAGGGAGTGCGCATCAAGGAGTGTCGGGTGAT GAGAGACCTCAAAGGAGCTCATGGGAAAGTTAAGGGTCAGTCCTTGGGCTACGCCTTTGC AGAGTTCCAGGAGCACGAGCATGCCCTGGCCGCCCTGCGCCACATCAACAACAATCCAGA AATCTTTGGGCCTCAGAAGAGACCGATAGTGGAGTTCTCTTTGGAAGATCGAAGGAAACT TAAAATAAAGGAAATGAGGATGCAGCGCAGCCTGCAAAAAGTGAAATCCAAGTCTGCAAC TGGTGAGCCCCAGCAGGAGCCACCAGAGATGGGGAAAAAACAGCAACAGAAAGCAGCTCA GAACCACACGCAAGAGCAAAGCAAGGCCCCCGTGGAGCAGAAGGGGAAGGTGGGCTCCGT ATCGTGGACAGGGTTCCAGACCAAGGCCGAAGTGGAGCACGTGGAGCTGTCTGATGGAAA GAAGAGAAGAAAGGTCCTGGCGCTCCCCTCTCACCGAGGCCCCAAAATCAGGTTGCGGGA CAAAGGGAAGATGAAGTCTCTCCCTCCCAAGAAGCCAAAGCCCCAGGTAAACCATTGGAA GCAAGAGAAGCAGAAATTATCTTCCAAGCAGGTGCCTAGGAAAAAAGCTCAGGGAAATAA GACAGAAATTCGCTTCAACCAGCTGGTCGAACAATATAAGCAGAAGTTATTGGGACCTTC TAAAGGAGCTCCTCTTGCAAAGAGGAGCAAATGGTTCGACAGTTGATAATGCCAACGGAC TGGATAAGGAGCTGGATTGTGTGCTTCTTGGTGAAGCCCCCCTCCCCCCATGTCGTTTAT TGCGGGAAAGAAACCACTGAGTGCCCTGCCACTTTGTTGGGGGCCCCTCTGGGCCGTGCG CATCTGAACTTGCGTCTCTCCCTGGTGTGCGGTTAGTTAACCAAGAAGAGGAATATCAGA AAGACATCATGATGCTTCTTGCATGTTTCGTGCGAAGGTGTGTCTATAATTCTTACGCAT TTTAATTCTTTGTTTCTCAAATGGTAACAGTTATAAAAAGCATTCTTTAGTGCTGAATTT TTAAGATGTATATTTTGTTAAGGATCTTATTTAAATGAGATATTTTATGGCTTTTCGAGT AACAGACTCATTTCTAACATGTGAATCCTTTATTATTTATAAATGTGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 930-1048, - strand, RNAz p=0.75953 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 930-1048, - strand, RNAz p=0.75953 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 2-140, gnl|bosTau2|chr4 (50167157-50167297) | |
| 2-140, gnl|Hg17|chr7 (127558686-127558552) | |
| 2-140, gnl|Mm7|chr6 (29070772-29070633) | |
| 191-349, gnl|bosTau2|chr4 (50170090-50170248) | |
| 191-349, gnl|canFam2|chr14 (11021464-11021270) | |
| 191-349, gnl|danRer3|chr18 (9924325-9924154) | |
| 191-349, gnl|dasNov1|scaffold_5917 (42434-42628) | |
| 191-349, gnl|echTel1|scaffold_230080 (14167-13980) | |
| 191-349, gnl|fr1|chrUn (182578332-182578140) | |
| 191-349, gnl|hg17|chr7 (127555266-127555460) | |
| 191-349, gnl|Hg17|chr7 (127555428-127555270) | |
| 191-349, gnl|loxAfr1|scaffold_2979 (46110-45916) | |
| 191-349, gnl|mm7|chr6 (29067550-29067750) | |
| 191-349, gnl|Mm7|chr6 (29067712-29067554) | |
| 191-349, gnl|monDom2|scaffold_22 (16217820-16217633) | |
| 191-349, gnl|oryCun1|scaffold_194806 (13299-13493) | |
| 191-349, gnl|panTro1|chr6 (129970415-129970609) | |
| 191-349, gnl|rheMac2|chr3 (165856553-165856747) | |
| 191-349, gnl|rn3|chr4 (56258138-56258337) | |
| 191-349, gnl|tetNig1|chr13 (3822546-3822715) | |
| 191-349, gnl|xenTro1|scaffold_20 (3635389-3635190) | |
| 574-833, gnl|bosTau2|chr4 (50176579-50176838) | |
| 574-833, gnl|Hg17|chr7 (127549025-127548766) | |
| 574-833, gnl|Mm7|chr6 (29060832-29060573) | |
| 930-1486, gnl|bosTau2|chr4 (50179956-50180503) | |
| 930-1486, gnl|Hg17|chr7 (127544937-127544357) | |
| 930-1486, gnl|Mm7|chr6 (29057672-29057157) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-140, gnl|bosTau2|chr4 (50167157-50167297) | |
| 2-140, gnl|Hg17|chr7 (127558686-127558552) | |
| 2-140, gnl|Mm7|chr6 (29070772-29070633) | |
| 191-349, gnl|bosTau2|chr4 (50170090-50170248) | |
| 191-349, gnl|canFam2|chr14 (11021464-11021270) | |
| 191-349, gnl|danRer3|chr18 (9924325-9924154) | |
| 191-349, gnl|dasNov1|scaffold_5917 (42434-42628) | |
| 191-349, gnl|echTel1|scaffold_230080 (14167-13980) | |
| 191-349, gnl|fr1|chrUn (182578332-182578140) | |
| 191-349, gnl|hg17|chr7 (127555266-127555460) | |
| 191-349, gnl|Hg17|chr7 (127555428-127555270) | |
| 191-349, gnl|loxAfr1|scaffold_2979 (46110-45916) | |
| 191-349, gnl|mm7|chr6 (29067550-29067750) | |
| 191-349, gnl|Mm7|chr6 (29067712-29067554) | |
| 191-349, gnl|monDom2|scaffold_22 (16217820-16217633) | |
| 191-349, gnl|oryCun1|scaffold_194806 (13299-13493) | |
| 191-349, gnl|panTro1|chr6 (129970415-129970609) | |
| 191-349, gnl|rheMac2|chr3 (165856553-165856747) | |
| 191-349, gnl|rn3|chr4 (56258138-56258337) | |
| 191-349, gnl|tetNig1|chr13 (3822546-3822715) | |
| 191-349, gnl|xenTro1|scaffold_20 (3635389-3635190) | |
| 574-833, gnl|bosTau2|chr4 (50176579-50176838) | |
| 574-833, gnl|Hg17|chr7 (127549025-127548766) | |
| 574-833, gnl|Mm7|chr6 (29060832-29060573) | |
| 930-1486, gnl|bosTau2|chr4 (50179956-50180503) | |
| 930-1486, gnl|Hg17|chr7 (127544937-127544357) | |
| 930-1486, gnl|Mm7|chr6 (29057672-29057157) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| gul (0.177588) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| bla (0.124347) | |
| spc (0.113366) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| gul (0.177588) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| bla (0.124347) | |
| spc (0.113366) |