Non-Coding RNA Search

Ss1.1-Pig4-TMW8053A13.3

Sequence:


               
               ACCGACCATGTGGCTTAGGCTCTGGCTTGGGGGCTAGTGAGGGCCTGGGCGAGTGCTGCT
ACAGTGAGGCACAGCGCTGCGATGGCTCCTGGGACTGTGCCGATGGCACAGACGAGGAGA
ACTGTCCCAGCTGCCCACCTGGACACTACCCCTGTGGGGCTGCCGGCACCCCTGGTGCCA
CAGCCTGCTACCTGCCTGCTGACCGCTGCAACTACCAGACCTTCTGTGCTGATGGAGCAG
ACGAGAGACGCTGTCGGCACTGCCAGCCTGGCAACTTTCGATGCCGGGATGAGAAGTGCG
TGTATGAGACATGGGTGTGCGATGGGCAGCCTGACTGTGCTGATGGCAGCGACGAGTGGG
ACTGCTCCTATGCCCTGCCCCGCAAAGTCATTACTGCCGCCGTCATTGGCAGCCTCGTGT
GTGGCTTGCTGCTGGTCATTGCCCTGGGCTGCACCTGCAAGCTCTATGCCATTCGCACCC
AGGAGTACAGCATCTTTGCCCCCCTCTCCCGGATGGAGGCTGAAATTGTGCAGCAGCAGG
CGCCTCCCTCCTATGGGCAGCTCATTGCCCAGGGCGCCATCCCACCTGTAGAGGACTTCC
CTACAGAGAACCCCAATGATAACTCAGTGCTGGGCAACCTGCGCTCTCTGCTGCAGATCT
TGCGCCAGGACATGACTCCAGGGGGGGCCACAGGTGCCCGCCGCCGCCAACGGGGCCGTT
CTATGCGCCGCCTGGTGCGTCGTCTCCGCCGCTGGGGCCTGCTTCCTCGAACCAACCCCC
CGGCCAGGACCCCTGAGACCAGATCCCAGGTCACATCTTCTGCTGCTCCCCCCGAGACCT
TAGATGGCAGCACAGGTCTGGCCAGTGAGGGCGGGGCAGTGGGCGGACAGGATGGGGAAC
AGGCACCCCCGCTGCCTGTCAAGGCCCCGCTGCCACCTGCCAGCACATCTGCAGCCTTTC
CTACTGTCTCTGAGGCCCCGGGGCCACTGCCCTCAGCATCCCTGGAGCCATCACTGCTGT
CCGGAGTAGTACAGGCCCTGCGAGGCCGCCTCCTGCCCAGCCTGCGGCCCCCAGGACCAA
CCCGGGACCCACCTGGACCCCACACAACAGTCCTATCCCCAGAGGATGAGGATGATGTGC
TCTTGGTGCCACTGGCTGAGCCGGGGGTCTGGGTGGTTGAAGCGGAGGATGAGCCACTGC
TTGCCTGAGGTGACCTGACTCCCCTGTTGCTCTATTCAGAGTGACAACAAGCCTTTAGAG
GGCAGCTCAGCTTCCCTTCTACTACTTCCCTCCTTGTTCCTCAGTCTGAGGGGACATGAT
GGGCTTTCCATTGATGACAGGTAGCTGCGTTAAAGTTAGGTGTCCCTCAGGCAGGGAGAG
GGCTCACACAGAGCCCCTTCTGCACATGGCCAGAGACCACAGGCCACCACCACCACCATT
TGGGTGGCTGATTTTAAAAGGTAAAGTTCTTAAAGGGTCATAGGCCTGGACACTCCATCC
TTGCCAAACCGCCACCCAAAAGTGGCCTTAAGCACTAGAATGCCAATTGGCTGGGACTTC
CAGCTCCCAAGGGGAGGATTTGGGCAGGGCCTGAGGTTTTGCCTACAGGGATCCCTCCCA
GAAGGCCTGGCTCATAAAAAGAGCACAACAAATGCTTTTGTCCCATAGCTAGGTCATTGC
CCAGGAAGCCAAGGTTGAAAATAAAGGAATCAGAAATTTAAGATTTTTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCGACCATGTGGCTTAGGCTCTGGCTTGGGGGCTAGTGAGGGCCTGGGCGAGTGCTGCT
ACAGTGAGGCACAGCGCTGCGATGGCTCCTGGGACTGTGCCGATGGCACAGACGAGGAGA
ACTGTCCCAGCTGCCCACCTGGACACTACCCCTGTGGGGCTGCCGGCACCCCTGGTGCCA
CAGCCTGCTACCTGCCTGCTGACCGCTGCAACTACCAGACCTTCTGTGCTGATGGAGCAG
ACGAGAGACGCTGTCGGCACTGCCAGCCTGGCAACTTTCGATGCCGGGATGAGAAGTGCG
TGTATGAGACATGGGTGTGCGATGGGCAGCCTGACTGTGCTGATGGCAGCGACGAGTGGG
ACTGCTCCTATGCCCTGCCCCGCAAAGTCATTACTGCCGCCGTCATTGGCAGCCTCGTGT
GTGGCTTGCTGCTGGTCATTGCCCTGGGCTGCACCTGCAAGCTCTATGCCATTCGCACCC
AGGAGTACAGCATCTTTGCCCCCCTCTCCCGGATGGAGGCTGAAATTGTGCAGCAGCAGG
CGCCTCCCTCCTATGGGCAGCTCATTGCCCAGGGCGCCATCCCACCTGTAGAGGACTTCC
CTACAGAGAACCCCAATGATAACTCAGTGCTGGGCAACCTGCGCTCTCTGCTGCAGATCT
TGCGCCAGGACATGACTCCAGGGGGGGCCACAGGTGCCCGCCGCCGCCAACGGGGCCGTT
CTATGCGCCGCCTGGTGCGTCGTCTCCGCCGCTGGGGCCTGCTTCCTCGAACCAACCCCC
CGGCCAGGACCCCTGAGACCAGATCCCAGGTCACATCTTCTGCTGCTCCCCCCGAGACCT
TAGATGGCAGCACAGGTCTGGCCAGTGAGGGCGGGGCAGTGGGCGGACAGGATGGGGAAC
AGGCACCCCCGCTGCCTGTCAAGGCCCCGCTGCCACCTGCCAGCACATCTGCAGCCTTTC
CTACTGTCTCTGAGGCCCCGGGGCCACTGCCCTCAGCATCCCTGGAGCCATCACTGCTGT
CCGGAGTAGTACAGGCCCTGCGAGGCCGCCTCCTGCCCAGCCTGCGGCCCCCAGGACCAA
CCCGGGACCCACCTGGACCCCACACAACAGTCCTATCCCCAGAGGATGAGGATGATGTGC
TCTTGGTGCCACTGGCTGAGCCGGGGGTCTGGGTGGTTGAAGCGGAGGATGAGCCACTGC
TTGCCTGAGGTGACCTGACTCCCCTGTTGCTCTATTCAGAGTGACAACAAGCCTTTAGAG
GGCAGCTCAGCTTCCCTTCTACTACTTCCCTCCTTGTTCCTCAGTCTGAGGGGACATGAT
GGGCTTTCCATTGATGACAGGTAGCTGCGTTAAAGTTAGGTGTCCCTCAGGCAGGGAGAG
GGCTCACACAGAGCCCCTTCTGCACATGGCCAGAGACCACAGGCCACCACCACCACCATT
TGGGTGGCTGATTTTAAAAGGTAAAGTTCTTAAAGGGTCATAGGCCTGGACACTCCATCC
TTGCCAAACCGCCACCCAAAAGTGGCCTTAAGCACTAGAATGCCAATTGGCTGGGACTTC
CAGCTCCCAAGGGGAGGATTTGGGCAGGGCCTGAGGTTTTGCCTACAGGGATCCCTCCCA
GAAGGCCTGGCTCATAAAAAGAGCACAACAAATGCTTTTGTCCCATAGCTAGGTCATTGC
CCAGGAAGCCAAGGTTGAAAATAAAGGAATCAGAAATTTAAGATTTTTAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q5I0F9_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q5I0F9_HUMAN

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               1-199, - strand, RNAz p=0.597766
               

               
               240-439, + strand, RNAz p=0.612813
               

               
               740-979, - strand, RNAz p=0.976309
               

               
               1282-1695, - strand, RNAz p=0.985092

Predicted RNA structure(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-199, - strand, RNAz p=0.597766
               

               
               240-439, + strand, RNAz p=0.612813
               

               
               740-979, - strand, RNAz p=0.976309
               

               
               1282-1695, - strand, RNAz p=0.985092

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of AY358399, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of AY358399, +

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-490, gnl|bosTau2|chr10 (14142775-14142286)
               

               
               1-490, gnl|Hg17|chr14 (22414932-22415421)
               

               
               1-490, gnl|Mm7|chr14 (49335800-49336289)
               


               
               621-1722, gnl|bosTau2|chr10 (14141708-14140592)
               

               
               621-1722, gnl|Hg17|chr14 (22415989-22417131)
               

               
               621-1722, gnl|Mm7|chr14 (49336773-49337789)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-490, gnl|bosTau2|chr10 (14142775-14142286)
               

               
               1-490, gnl|Hg17|chr14 (22414932-22415421)
               

               
               1-490, gnl|Mm7|chr14 (49335800-49336289)
               


               
               621-1722, gnl|bosTau2|chr10 (14141708-14140592)
               

               
               621-1722, gnl|Hg17|chr14 (22415989-22417131)
               

               
               621-1722, gnl|Mm7|chr14 (49336773-49337789)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

Help | Less info


               
               cga (1.11638)
               

               
               fce (0.543183)
               

               
               cov (0.528611)
               

               
               cly (0.482567)
               

               
               cty (0.41632)
               

               
               ill (0.351185)
               

               
               jca (0.34188)
               

               
               mcp (0.341297)
               

               
               cag (0.302389)
               

               
               med (0.232504)
               

               
               col (0.195008)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (1.11638)
               

               
               fce (0.543183)
               

               
               cov (0.528611)
               

               
               cly (0.482567)
               

               
               cty (0.41632)
               

               
               ill (0.351185)
               

               
               jca (0.34188)
               

               
               mcp (0.341297)
               

               
               cag (0.302389)
               

               
               med (0.232504)
               

               
               col (0.195008)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	1-199, - strand, RNAz p=0.597766
	240-439, + strand, RNAz p=0.612813
	740-979, - strand, RNAz p=0.976309
	1282-1695, - strand, RNAz p=0.985092

	1-490, gnl\|bosTau2\|chr10 (14142775-14142286)
	1-490, gnl\|Hg17\|chr14 (22414932-22415421)
	1-490, gnl\|Mm7\|chr14 (49335800-49336289)

	621-1722, gnl\|bosTau2\|chr10 (14141708-14140592)
	621-1722, gnl\|Hg17\|chr14 (22415989-22417131)
	621-1722, gnl\|Mm7\|chr14 (49336773-49337789)

	cga (1.11638)
	fce (0.543183)
	cov (0.528611)
	cly (0.482567)
	cty (0.41632)
	ill (0.351185)
	jca (0.34188)
	mcp (0.341297)
	cag (0.302389)
	med (0.232504)
	col (0.195008)
	eye (0.170503)
	fhi (0.169578)
	nje (0.16592)
	nco (0.161734)
	csp (0.161186)
	cli (0.152812)
	che (0.136314)
	pla (0.133672)
	ute (0.132784)
	eru (0.120048)
	clu (0.119646)
	jej (0.0989218)
	eje (0.0988338)