Non-Coding RNA Search

Ss1.1-Pig4-TMW8053A15.3

Sequence:


               
               GGAATGGAAACATCTTCCCCACGTGCCGGAAGCCAGCCGGCGCCGACGGCGGCGCGGTAC
TTTGCGTCCTGCCGCGCGGAGCCCCTGCGGGTGTCATCGCGAGACCAGCTCGCCGAAATG
GCCGCAGCCAGTCAAGGAAACTTTGAGGGGAATTTTGAGTCACTTGACCTTGCAGAACTG
GCTAAAAAGCAGCCATGGTGGCGCAAGCTGTTTGGGCAGGAATCTGGGCCTTCAGCCGAA
AAGTATAGCGTGGCAACCCAGCTGTTAATTGGAGGTGTCACTGGCTGGTGCACGGGTTTC
ATATTCCAGAAGGTTGGAAAGTTGGCTGCAACGGCTGTGGGAGGTGGATTTTTTCTCCTG
CAGCTTGCAAACCATACTGGGTACATCAAAGTTGACTGGCAGCGAGTGGAGAAGGACATG
AAGAAGGCCAAGGAGCAGCTGAAGATCCGTAAGAGCAACCAGATACCGACGGAGGTCAAG
AGCAAAGCAGAAGAGGTGGTGTCCTTTGTGAAGAAGAACGTCCTGGTGACGGGGGGGTTT
TTCGGAGGCTTTCTGCTTGGCATGGCGTCCTAGAGCGACGACTTCGTGGCCGTCCTTCCC
GGCTTTTCCGACGGCAGCCGCTCCGCTCCAGGACAGGACGCCGAGCCTGTCCCTCTCCTC
CCCGCCGGGCGTGTCCGAGTGGCTTCTGCAGGCGTCTGTGGCTCCGAGGTGACCGGCCCG
CCGGGAGCTCGCAGGCGGTGAAGACACGGAGGCGGTAGCGCCCCTCCCCCTGAGTACCGC
GCGGCAAGAGTCCTCCCTGCTCCGCAAGGCACCCCCGGGCGAGAGGGCGCCCGGCTTGCT
TGGGAAAAGGAAGAAGCAGCGTGTGCGCTATAGCCGATGCTGTGCTGCAGGGAAGGGAAC
TGAATACACTTGCCTTGAAGCATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAATGGAAACATCTTCCCCACGTGCCGGAAGCCAGCCGGCGCCGACGGCGGCGCGGTAC
TTTGCGTCCTGCCGCGCGGAGCCCCTGCGGGTGTCATCGCGAGACCAGCTCGCCGAAATG
GCCGCAGCCAGTCAAGGAAACTTTGAGGGGAATTTTGAGTCACTTGACCTTGCAGAACTG
GCTAAAAAGCAGCCATGGTGGCGCAAGCTGTTTGGGCAGGAATCTGGGCCTTCAGCCGAA
AAGTATAGCGTGGCAACCCAGCTGTTAATTGGAGGTGTCACTGGCTGGTGCACGGGTTTC
ATATTCCAGAAGGTTGGAAAGTTGGCTGCAACGGCTGTGGGAGGTGGATTTTTTCTCCTG
CAGCTTGCAAACCATACTGGGTACATCAAAGTTGACTGGCAGCGAGTGGAGAAGGACATG
AAGAAGGCCAAGGAGCAGCTGAAGATCCGTAAGAGCAACCAGATACCGACGGAGGTCAAG
AGCAAAGCAGAAGAGGTGGTGTCCTTTGTGAAGAAGAACGTCCTGGTGACGGGGGGGTTT
TTCGGAGGCTTTCTGCTTGGCATGGCGTCCTAGAGCGACGACTTCGTGGCCGTCCTTCCC
GGCTTTTCCGACGGCAGCCGCTCCGCTCCAGGACAGGACGCCGAGCCTGTCCCTCTCCTC
CCCGCCGGGCGTGTCCGAGTGGCTTCTGCAGGCGTCTGTGGCTCCGAGGTGACCGGCCCG
CCGGGAGCTCGCAGGCGGTGAAGACACGGAGGCGGTAGCGCCCCTCCCCCTGAGTACCGC
GCGGCAAGAGTCCTCCCTGCTCCGCAAGGCACCCCCGGGCGAGAGGGCGCCCGGCTTGCT
TGGGAAAAGGAAGAAGCAGCGTGTGCGCTATAGCCGATGCTGTGCTGCAGGGAAGGGAAC
TGAATACACTTGCCTTGAAGCATG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q864V5_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q864V5_PIG

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               135-289, gnl|bosTau2|chrX (13208255-13208101)
               

               
               135-289, gnl|Hg17|chrX (153825380-153825534)
               

               
               135-289, gnl|Mm7|chrX (70773749-70773903)
               


               
               348-498, gnl|bosTau2|chrX (13193018-13192868)
               

               
               348-498, gnl|Hg17|chrX (153843630-153843783)
               

               
               348-498, gnl|Mm7|chrX (70778273-70778423)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               135-289, gnl|bosTau2|chrX (13208255-13208101)
               

               
               135-289, gnl|Hg17|chrX (153825380-153825534)
               

               
               135-289, gnl|Mm7|chrX (70773749-70773903)
               


               
               348-498, gnl|bosTau2|chrX (13193018-13192868)
               

               
               348-498, gnl|Hg17|chrX (153843630-153843783)
               

               
               348-498, gnl|Mm7|chrX (70778273-70778423)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

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               sme (0.610874)
               

               
               ldo (0.38801)
               

               
               fhi (0.339155)
               

               
               jej (0.296765)
               

               
               hlv (0.278513)
               

               
               cov (0.264306)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.610874)
               

               
               ldo (0.38801)
               

               
               fhi (0.339155)
               

               
               jej (0.296765)
               

               
               hlv (0.278513)
               

               
               cov (0.264306)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	135-289, gnl\|bosTau2\|chrX (13208255-13208101)
	135-289, gnl\|Hg17\|chrX (153825380-153825534)
	135-289, gnl\|Mm7\|chrX (70773749-70773903)

	348-498, gnl\|bosTau2\|chrX (13193018-13192868)
	348-498, gnl\|Hg17\|chrX (153843630-153843783)
	348-498, gnl\|Mm7\|chrX (70778273-70778423)

	sme (0.610874)
	ldo (0.38801)
	fhi (0.339155)
	jej (0.296765)
	hlv (0.278513)
	cov (0.264306)
	tes (0.207814)
	col (0.195008)
	nep (0.183925)
	ill (0.175593)
	mcp (0.170648)
	cje (0.165235)
	csp (0.161186)
	eli (0.151814)
	cag (0.151194)
	spl (0.143184)
	pty (0.142714)
	lnt (0.142308)
	che (0.136314)
	ssp (0.13552)
	ste (0.135208)
	pla (0.133672)
	med (0.116252)
	ecc (0.115035)
	nbm (0.0993246)