Ss1.1-Pig4-TMW8053A18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATTTTCTGAAAGCCATTGAAGAAGCCAATAAGAAGATGCAAGCGGCAGAGATTAGCCTG GAGGAGAAGGACCAGAGGATCGGAGAGCTGGACAGGCTGATTGAGCGCATGGAGAAGGAA CGCCATCAGCTTCAACTCCAACTCCTGGAGCATGAAACAGAAATGTCAGCAGAAATAACT GATTCTGACAAAGAAAGGTATCAGCAGCTGGAGGAGGCGTCAGCCAGCCTCCGGGAGCGG ATCAGACACCTAGATGACATGGTGCATTGCCAGCAGAAGAAAGTCAAGCAGATGGTCGAG GAGATTGAATCACTGAAGAAAAAGGTGCAGCAGAAACAGCTCTTAATATTGCAGCTTTTA GAGAAGATATCTTTCTTAGAAGGAGAGAATAATGAACTACAAAGCAGGCTGGACTATTTA ACAGAAACCCAGCCCAGGACTGAGGTGGAAACCAGAGAGATTGGAGTGGGCTGTGATCTC CTACCCAGCCAAACAGGTAGGACCCGTGAAATTGCAATGCCTTCCAGGAACTATACCCCG TACACACGAGTCCTGGAATTAACCATGAAGAAAACGCTGACTTAAGCACTTGGAGACATG CACTTTTCACAGAGGGACAAAGGCCCTGGAACCCTGCGGCATGAAGTCTGGAAAGGGTGA CGGTTGCTTCCTCCTCTATACACTTTAAGCCCCAGTGGAAACTGCTGAGGTTCTGATCCA CTTCTAAAACATGAAGGGAGGGGGAGGGCAAGAGAGAGGGCAGGTTTCAAGGTCGTATTT CAAACAACTAACCTGTGTCCCCACTGTGCTGGGCCGTCCTTAGCTTTCCATGTAGACACT GAGTCGTGTTGGGAGAATCCCCTCACAGTTTATTTTGTTTTACTAGACTTCGGTTGGGAG GAAAAGGGCATTAACCTGAAATTTCATGTTACTCAGGCCAGGATCATTTGTTACAGCATG AAGGTTTTACTTACCCATAAAAGTATTACAGGCAGTGTTTCTCTGGTACAGGGAAGCCTG CCCACAGGGGCATGGGCCTCTCCAGGGGGAGAAGTGACCCAGAAGGGCAGGTGCCCCAGC GCACAAGGGCAGGTGCTGAGGCCAGTGCAGGGGCGTGGGAGCCTTCAGTACAGCTGGGCC TCACCTGGGCAGACATGCTTCATTCTGATGTGCTAATCCCTTGGTTTAATTTGTGCCTTA TGCCTTTATGGGGCCAGCTGAAATCACTGTATTTATTGAACCTGTGATTTTTTTTTTTTT TTCCTTTCTTTCTCACTTTAATGGAGAGAATTTTGTATGTATGTTGTGGAAATTTAATCA CTTAATGTTTTCAGTATCAACTGGTGTTTTTGTTAAAGGAATGAGTAATTTGCTCATGCA TGCTCTACTGATATAACTCATGTCACATATGTTTAATAAATGCCATAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATTTTCTGAAAGCCATTGAAGAAGCCAATAAGAAGATGCAAGCGGCAGAGATTAGCCTG GAGGAGAAGGACCAGAGGATCGGAGAGCTGGACAGGCTGATTGAGCGCATGGAGAAGGAA CGCCATCAGCTTCAACTCCAACTCCTGGAGCATGAAACAGAAATGTCAGCAGAAATAACT GATTCTGACAAAGAAAGGTATCAGCAGCTGGAGGAGGCGTCAGCCAGCCTCCGGGAGCGG ATCAGACACCTAGATGACATGGTGCATTGCCAGCAGAAGAAAGTCAAGCAGATGGTCGAG GAGATTGAATCACTGAAGAAAAAGGTGCAGCAGAAACAGCTCTTAATATTGCAGCTTTTA GAGAAGATATCTTTCTTAGAAGGAGAGAATAATGAACTACAAAGCAGGCTGGACTATTTA ACAGAAACCCAGCCCAGGACTGAGGTGGAAACCAGAGAGATTGGAGTGGGCTGTGATCTC CTACCCAGCCAAACAGGTAGGACCCGTGAAATTGCAATGCCTTCCAGGAACTATACCCCG TACACACGAGTCCTGGAATTAACCATGAAGAAAACGCTGACTTAAGCACTTGGAGACATG CACTTTTCACAGAGGGACAAAGGCCCTGGAACCCTGCGGCATGAAGTCTGGAAAGGGTGA CGGTTGCTTCCTCCTCTATACACTTTAAGCCCCAGTGGAAACTGCTGAGGTTCTGATCCA CTTCTAAAACATGAAGGGAGGGGGAGGGCAAGAGAGAGGGCAGGTTTCAAGGTCGTATTT CAAACAACTAACCTGTGTCCCCACTGTGCTGGGCCGTCCTTAGCTTTCCATGTAGACACT GAGTCGTGTTGGGAGAATCCCCTCACAGTTTATTTTGTTTTACTAGACTTCGGTTGGGAG GAAAAGGGCATTAACCTGAAATTTCATGTTACTCAGGCCAGGATCATTTGTTACAGCATG AAGGTTTTACTTACCCATAAAAGTATTACAGGCAGTGTTTCTCTGGTACAGGGAAGCCTG CCCACAGGGGCATGGGCCTCTCCAGGGGGAGAAGTGACCCAGAAGGGCAGGTGCCCCAGC GCACAAGGGCAGGTGCTGAGGCCAGTGCAGGGGCGTGGGAGCCTTCAGTACAGCTGGGCC TCACCTGGGCAGACATGCTTCATTCTGATGTGCTAATCCCTTGGTTTAATTTGTGCCTTA TGCCTTTATGGGGCCAGCTGAAATCACTGTATTTATTGAACCTGTGATTTTTTTTTTTTT TTCCTTTCTTTCTCACTTTAATGGAGAGAATTTTGTATGTATGTTGTGGAAATTTAATCA CTTAATGTTTTCAGTATCAACTGGTGTTTTTGTTAAAGGAATGAGTAATTTGCTCATGCA TGCTCTACTGATATAACTCATGTCACATATGTTTAATAAATGCCATAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 198-315, + strand, RNAz p=0.525237 | |
| 964-1118, - strand, RNAz p=0.999412 | |
| 980-1091, + strand, RNAz p=0.974484 | |
| 1199-1318, - strand, RNAz p=0.647723 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 198-315, + strand, RNAz p=0.525237 | |
| 964-1118, - strand, RNAz p=0.999412 | |
| 980-1091, + strand, RNAz p=0.974484 | |
| 1199-1318, - strand, RNAz p=0.647723 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of CR617486, + |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 3-118, gnl|bosTau2|chr10 (34721288-34721173) | |
| 3-118, gnl|Hg17|chr15 (55713117-55713232) | |
| 3-118, gnl|Mm7|chr9 (71585142-71585027) | |
| 196-315, gnl|bosTau2|chr10 (34715650-34715532) | |
| 196-315, gnl|canFam2|chr30 (25798511-25798648) | |
| 196-315, gnl|danRer3|chr7 (43301421-43301267) | |
| 196-315, gnl|dasNov1|scaffold_25380 (78603-78740) | |
| 196-315, gnl|echTel1|scaffold_312756 (304724-304589) | |
| 196-315, gnl|galGal2|chr10 (8058619-8058480) | |
| 196-315, gnl|hg17|chr15 (55718904-55719043) | |
| 196-315, gnl|Hg17|chr15 (55718928-55719046) | |
| 196-315, gnl|loxAfr1|scaffold_96101 (947-811) | |
| 196-315, gnl|mm7|chr9 (71581643-71581513) | |
| 196-315, gnl|Mm7|chr9 (71581625-71581508) | |
| 196-315, gnl|monDom2|scaffold_12 (35515017-35515154) | |
| 196-315, gnl|oryCun1|scaffold_159944 (1742-1609) | |
| 196-315, gnl|panTro1|chr16 (56069632-56069771) | |
| 196-315, gnl|rheMac2|chr7 (35971306-35971445) | |
| 196-315, gnl|rn3|chr8 (76033139-76033007) | |
| 196-315, gnl|tetNig1|chr5 (5402769-5402896) | |
| 196-315, gnl|xenTro1|scaffold_297 (1287513-1287379) | |
| 486-1428, gnl|bosTau2|chr10 (34659103-34658171) | |
| 486-1428, gnl|canFam2|chr30 (25840807-25841497) | |
| 486-1428, gnl|dasNov1|scaffold_2670 (46262-46942) | |
| 486-1428, gnl|echTel1|scaffold_312756 (254822-254168) | |
| 486-1428, gnl|hg17|chr15 (55763737-55764448) | |
| 486-1428, gnl|Hg17|chr15 (55763889-55764839) | |
| 486-1428, gnl|mm7|chr9 (71540215-71539589) | |
| 486-1428, gnl|Mm7|chr9 (71540081-71539205) | |
| 486-1428, gnl|monDom2|scaffold_12 (35549658-35550404) | |
| 486-1428, gnl|oryCun1|scaffold_201726 (138585-137878) | |
| 486-1428, gnl|panTro1|chr16 (56114483-56115194) | |
| 486-1428, gnl|rheMac2|chr7 (36017251-36017957) | |
| 486-1428, gnl|rn3|chr8 (75991063-75990439) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-118, gnl|bosTau2|chr10 (34721288-34721173) | |
| 3-118, gnl|Hg17|chr15 (55713117-55713232) | |
| 3-118, gnl|Mm7|chr9 (71585142-71585027) | |
| 196-315, gnl|bosTau2|chr10 (34715650-34715532) | |
| 196-315, gnl|canFam2|chr30 (25798511-25798648) | |
| 196-315, gnl|danRer3|chr7 (43301421-43301267) | |
| 196-315, gnl|dasNov1|scaffold_25380 (78603-78740) | |
| 196-315, gnl|echTel1|scaffold_312756 (304724-304589) | |
| 196-315, gnl|galGal2|chr10 (8058619-8058480) | |
| 196-315, gnl|hg17|chr15 (55718904-55719043) | |
| 196-315, gnl|Hg17|chr15 (55718928-55719046) | |
| 196-315, gnl|loxAfr1|scaffold_96101 (947-811) | |
| 196-315, gnl|mm7|chr9 (71581643-71581513) | |
| 196-315, gnl|Mm7|chr9 (71581625-71581508) | |
| 196-315, gnl|monDom2|scaffold_12 (35515017-35515154) | |
| 196-315, gnl|oryCun1|scaffold_159944 (1742-1609) | |
| 196-315, gnl|panTro1|chr16 (56069632-56069771) | |
| 196-315, gnl|rheMac2|chr7 (35971306-35971445) | |
| 196-315, gnl|rn3|chr8 (76033139-76033007) | |
| 196-315, gnl|tetNig1|chr5 (5402769-5402896) | |
| 196-315, gnl|xenTro1|scaffold_297 (1287513-1287379) | |
| 486-1428, gnl|bosTau2|chr10 (34659103-34658171) | |
| 486-1428, gnl|canFam2|chr30 (25840807-25841497) | |
| 486-1428, gnl|dasNov1|scaffold_2670 (46262-46942) | |
| 486-1428, gnl|echTel1|scaffold_312756 (254822-254168) | |
| 486-1428, gnl|hg17|chr15 (55763737-55764448) | |
| 486-1428, gnl|Hg17|chr15 (55763889-55764839) | |
| 486-1428, gnl|mm7|chr9 (71540215-71539589) | |
| 486-1428, gnl|Mm7|chr9 (71540081-71539205) | |
| 486-1428, gnl|monDom2|scaffold_12 (35549658-35550404) | |
| 486-1428, gnl|oryCun1|scaffold_201726 (138585-137878) | |
| 486-1428, gnl|panTro1|chr16 (56114483-56115194) | |
| 486-1428, gnl|rheMac2|chr7 (36017251-36017957) | |
| 486-1428, gnl|rn3|chr8 (75991063-75990439) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.272628) |