Non-Coding RNA Search

Ss1.1-Pig4-TMW8053A24.5

Sequence:


               
               AAGACTTGGGGTTAAAGAGGATTTTCGTCTTGGATCCAACAGGCAGAATATGATCTGTGT
CCAAAAGTGAACTTGAGTCAGGAATGAAACAATTTCAGCATAAACAAGCACAAAAATTTA
GTCTGCTGGCTGACTGGAAACAAAAAAAAAAAAGTCAAGATGGAATATGAGGAATTCCAA
CACAATGGGGCACCAAGGCCTTTAGGCCTCTCTTTTTATTTTGCTTTGGTTCTGTTTGTT
TTTCTTTAGAGACACGCTCTCTCTCATGGGACTTGAAGTGGACTCATCTTTGTGCAGTGC
TGGTTTTGCCATACTCATTTCAAGTATTATAGACATATGTAATGGTGAAAATATATGAAC
TGTGGCCTTTTTCATTCTTGTTACTTGTGATGCAATTAAGTGAAGATAAGAAAAAAAAAA
AAAAAGCAGAGATTTACCATGTATCAGTGCCTGGCTTTTTGTTATAAAGCTTTGTTTGTC
TAGTGCTCTTTTTGCTATAAAATAGACTGTAGTACACCCTAGTAGGAAAAAAAAAACTAA
ATTTAAAAAATAAAAAATATATTTGGCTTATTTTTCGCAGGAGCAATCCTTTTATACCAT
GAATATTACAAAAAAAATTGTCAGATTCTGAATATTTCTTCTTTGTAGATTTTTGGAATC
ATTATGAGTAAAAGTTTGTTACTTTATTTTACTATTTAAAAGATGTTATTTTACCATGTG
TTACTGAGATGAAACTGTATGGTAGCTTTTTTGTTTGTTTTTTGTTTTCGTTTTGTTTTT
GTTTTTTTAGTTGTAGGTCGCAGCGGGGAAATTTTTTGCGACTGTACACATAGCTGCAGC
ATTAAAAACTAAAAAAAAAAATTGTTAAAAAAAAGAAAAAAAGGGAAAACATTTAAAAAA
AAAAGATAAACAGTTACACCTTGTTTTCAATGTGTGGCTGAGTGCCTCGATTTTTTCATG
TTTTTGGTGTATTTCTGATTTGTAGAAGTGTCCAAACAGGTTGTGTGCTGGAGTTCCTTC
AAGACAAAAACAAACCCAGCTTGGTCTAGGCCATTACCTGTTTCCCATCTGTAGTTATTC
GATGAAGTCATGTACATGACCGTTCTGTAGCAATAAATGTGCCATTTTTATAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGACTTGGGGTTAAAGAGGATTTTCGTCTTGGATCCAACAGGCAGAATATGATCTGTGT
CCAAAAGTGAACTTGAGTCAGGAATGAAACAATTTCAGCATAAACAAGCACAAAAATTTA
GTCTGCTGGCTGACTGGAAACAAAAAAAAAAAAGTCAAGATGGAATATGAGGAATTCCAA
CACAATGGGGCACCAAGGCCTTTAGGCCTCTCTTTTTATTTTGCTTTGGTTCTGTTTGTT
TTTCTTTAGAGACACGCTCTCTCTCATGGGACTTGAAGTGGACTCATCTTTGTGCAGTGC
TGGTTTTGCCATACTCATTTCAAGTATTATAGACATATGTAATGGTGAAAATATATGAAC
TGTGGCCTTTTTCATTCTTGTTACTTGTGATGCAATTAAGTGAAGATAAGAAAAAAAAAA
AAAAAGCAGAGATTTACCATGTATCAGTGCCTGGCTTTTTGTTATAAAGCTTTGTTTGTC
TAGTGCTCTTTTTGCTATAAAATAGACTGTAGTACACCCTAGTAGGAAAAAAAAAACTAA
ATTTAAAAAATAAAAAATATATTTGGCTTATTTTTCGCAGGAGCAATCCTTTTATACCAT
GAATATTACAAAAAAAATTGTCAGATTCTGAATATTTCTTCTTTGTAGATTTTTGGAATC
ATTATGAGTAAAAGTTTGTTACTTTATTTTACTATTTAAAAGATGTTATTTTACCATGTG
TTACTGAGATGAAACTGTATGGTAGCTTTTTTGTTTGTTTTTTGTTTTCGTTTTGTTTTT
GTTTTTTTAGTTGTAGGTCGCAGCGGGGAAATTTTTTGCGACTGTACACATAGCTGCAGC
ATTAAAAACTAAAAAAAAAAATTGTTAAAAAAAAGAAAAAAAGGGAAAACATTTAAAAAA
AAAAGATAAACAGTTACACCTTGTTTTCAATGTGTGGCTGAGTGCCTCGATTTTTTCATG
TTTTTGGTGTATTTCTGATTTGTAGAAGTGTCCAAACAGGTTGTGTGCTGGAGTTCCTTC
AAGACAAAAACAAACCCAGCTTGGTCTAGGCCATTACCTGTTTCCCATCTGTAGTTATTC
GATGAAGTCATGTACATGACCGTTCTGTAGCAATAAATGTGCCATTTTTATAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               897-1139, gnl|bosTau2|chr14 (20742245-20742002)
               

               
               897-1139, gnl|Hg17|chr18 (51041918-51041687)
               

               
               897-1139, gnl|Mm7|chr18 (70079894-70080120)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               897-1139, gnl|bosTau2|chr14 (20742245-20742002)
               

               
               897-1139, gnl|Hg17|chr18 (51041918-51041687)
               

               
               897-1139, gnl|Mm7|chr18 (70079894-70080120)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

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               lin (0.436808)
               

               
               amn (0.417711)
               

               
               eye (0.341006)
               

               
               nmm (0.265604)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.436808)
               

               
               amn (0.417711)
               

               
               eye (0.341006)
               

               
               nmm (0.265604)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	897-1139, gnl\|bosTau2\|chr14 (20742245-20742002)
	897-1139, gnl\|Hg17\|chr18 (51041918-51041687)
	897-1139, gnl\|Mm7\|chr18 (70079894-70080120)

	lin (0.436808)
	amn (0.417711)
	eye (0.341006)
	nmm (0.265604)
	cbe (0.239234)
	hea (0.204499)
	gul (0.177588)
	rec (0.17307)
	duo (0.172801)
	nco (0.161734)
	isp (0.150376)
	ski (0.146735)
	liv (0.146284)
	ese (0.126502)
	tra (0.123092)
	pgl (0.118483)
	med (0.116252)
	ecc (0.115035)
	cty (0.10408)
	eje (0.0988338)