Non-Coding RNA Search

Ss1.1-Pig4-TMW8053B09.3

Sequence:


               
               CCTCCACCACCCCGCACAAAGCGGCTCTAAACTCCAGGCCCTCATCTCCCCCTGGCAAAC
CCCGCTCAGGCTGGCTCCTTGGCCTGCCACTTTGATGGAGGAGGTATTGTAAGCTTTCCA
TTTTCTACAAGACGGAAAAAAAAGGGGGGCATTAGCGCTGATGGCTGTGTGTGCTAGCCT
GTATATATTAAAAAAAAAATCTACCTGTTCCTGACTTAAACAAACAGACAAAAAAAAAAA
ACTACCTTTTTATAATGCACAACTGTACTGCGGGCTGTATAGTTTTTAGTCTGTGTAGTT
AATTTAATTTGCTTTTTGTGCGGCAGAGCGATCTGCCCAGATACTTGAACACTGTGTTTT
ATTGTGGTAATTATGTTTTGTGACTCAAACTTCTGTGATGGGTGACGCACCCGTTGTGAT
TGTGAAAAGCTAGAATTCGATTTGAACTCAGGTTGTTTTTGAGGGAGAAAGCAGTTGCAT
AGAGTATAGCTCTGTAGTGGAACATGTCTTCTGTATAACTAGGCTGTTAAACTTTGGTTG
TAAACTAGCTGTAAGGATATCCCAGTGAAATAAAATAAAATAAAATAAGAAAAGAAGAGA
AAGTGTTCTCCGGGACACACAGATTCATGGTTTTTCTCCACTCGAAATGCGGGCATTTTA
GTCTGTACGTGCTCTATAAATCTGTCTTGTCAATTGTATATATAGAATCCACGTATTAAA
GAAAAGTCATCAAACACGCTTGAATATTGTTTTTGCACCAAACATTGAGGAAATTTGGAG
CTATACATATGTGCAGAAGGTTACTACCTATGGTTTACGTTGAATTTTAATTGGGGGAAA
ATGAATGCTTATTGTAACGGAGTTAATTTTATTGATAATAAATTATACGCTATGAAACCG
CCATTGGGCTGTTCTAGATTTGAATCCTTGATGAATCTGGGGTTTCCATCGGGCTGAACG
TACACTGTATATTTTGCAATAGTTACCTCAAGGCCTACTGACCAAATTGTTGTGTTGAGA
TGATATTTAACTTTTTGCCAAATAAAATATATTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCCACCACCCCGCACAAAGCGGCTCTAAACTCCAGGCCCTCATCTCCCCCTGGCAAAC
CCCGCTCAGGCTGGCTCCTTGGCCTGCCACTTTGATGGAGGAGGTATTGTAAGCTTTCCA
TTTTCTACAAGACGGAAAAAAAAGGGGGGCATTAGCGCTGATGGCTGTGTGTGCTAGCCT
GTATATATTAAAAAAAAAATCTACCTGTTCCTGACTTAAACAAACAGACAAAAAAAAAAA
ACTACCTTTTTATAATGCACAACTGTACTGCGGGCTGTATAGTTTTTAGTCTGTGTAGTT
AATTTAATTTGCTTTTTGTGCGGCAGAGCGATCTGCCCAGATACTTGAACACTGTGTTTT
ATTGTGGTAATTATGTTTTGTGACTCAAACTTCTGTGATGGGTGACGCACCCGTTGTGAT
TGTGAAAAGCTAGAATTCGATTTGAACTCAGGTTGTTTTTGAGGGAGAAAGCAGTTGCAT
AGAGTATAGCTCTGTAGTGGAACATGTCTTCTGTATAACTAGGCTGTTAAACTTTGGTTG
TAAACTAGCTGTAAGGATATCCCAGTGAAATAAAATAAAATAAAATAAGAAAAGAAGAGA
AAGTGTTCTCCGGGACACACAGATTCATGGTTTTTCTCCACTCGAAATGCGGGCATTTTA
GTCTGTACGTGCTCTATAAATCTGTCTTGTCAATTGTATATATAGAATCCACGTATTAAA
GAAAAGTCATCAAACACGCTTGAATATTGTTTTTGCACCAAACATTGAGGAAATTTGGAG
CTATACATATGTGCAGAAGGTTACTACCTATGGTTTACGTTGAATTTTAATTGGGGGAAA
ATGAATGCTTATTGTAACGGAGTTAATTTTATTGATAATAAATTATACGCTATGAAACCG
CCATTGGGCTGTTCTAGATTTGAATCCTTGATGAATCTGGGGTTTCCATCGGGCTGAACG
TACACTGTATATTTTGCAATAGTTACCTCAAGGCCTACTGACCAAATTGTTGTGTTGAGA
TGATATTTAACTTTTTGCCAAATAAAATATATTGAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               407-1056, gnl|bosTau2|chr4 (37091636-37092279)
               

               
               407-1056, gnl|Hg17|chr7 (26975950-26975306)
               

               
               407-1056, gnl|Mm7|chr6 (52187106-52186473)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               407-1056, gnl|bosTau2|chr4 (37091636-37092279)
               

               
               407-1056, gnl|Hg17|chr7 (26975950-26975306)
               

               
               407-1056, gnl|Mm7|chr6 (52187106-52186473)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               lin (1.89284)
               

               
               tbr (0.616713)
               

               
               kid (0.518941)
               

               
               bla (0.373042)
               

               
               ill (0.175593)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               cov (0.132153)
               

               
               ldo (0.0970026)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (1.89284)
               

               
               tbr (0.616713)
               

               
               kid (0.518941)
               

               
               bla (0.373042)
               

               
               ill (0.175593)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               cov (0.132153)
               

               
               ldo (0.0970026)

	407-1056, gnl\|bosTau2\|chr4 (37091636-37092279)
	407-1056, gnl\|Hg17\|chr7 (26975950-26975306)
	407-1056, gnl\|Mm7\|chr6 (52187106-52186473)

	lin (1.89284)
	tbr (0.616713)
	kid (0.518941)
	bla (0.373042)
	ill (0.175593)
	mga (0.160205)
	bfe (0.149858)
	cov (0.132153)
	ldo (0.0970026)