Non-Coding RNA Search

Ss1.1-Pig4-TMW8053B12.3

Sequence:


               
               TTGAGCTCTGCTTATTTTTTTCAGAGGCATTATTTTTACTGTAAGCTCCAAAGTGTAAGA
ATTAAAAGAACCGATCAAACACAGCTTCCTATTAGATTTTCTTCACTATGTAAATATTAT
TTGTGTTAACATTACAAAAAGGGATCCAACAGTTGAAGTTTGAATAACATTTTCTCCCCA
GGCATGTGCTTCCATGACAAATGCTTTCCTGTGTGGAAAATGCCATATGACTATTGCACT
ACCTTCTGTGTAGACCGTCTTGGTATTGAGTCTTTCCTATGTCAAGAACTAGGGTGTCTG
TAGCTGCCAAGTTTTTATAAGTGGCTTTATTCCTCTTCGAGTAGATTTATAAAGGAGCCC
AAGATGCACTGTTAGAGAGGGGAAAAATGTTTACAGTCTATAGTGTACACACCCTATATA
TTCGTTGAAGCCAGGGCCCTATAAGAGCAGCCTGGCCTATTGCTCTCTTAGGATGACTAG
AATTTAAGTGGCCGAGTGATTCGAGCAGAAGTTTGTGTTTTCTATTTTGGGGGGTTTTTT
AGGTTAAATTTGTAAGCTATATACATGCTTTTACTACTGAAAACAAAACTACAGGGCATC
ATATTAATTAGAAATCAATAATAATAGTAGATTTAATCCATTAACTTTTTAAAAGAGTAT
ATCCACTGTTGATTTCCTTCCTGTTTTCGGAGGCACATTCCTTTATGAGTTTTTAAACCA
CCATATTCTCTTCTGCAAACAAGGGGTGCCAGTGTTGCTTAATGGAAGATAAATCATCAA
TTTAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGAGCTCTGCTTATTTTTTTCAGAGGCATTATTTTTACTGTAAGCTCCAAAGTGTAAGA
ATTAAAAGAACCGATCAAACACAGCTTCCTATTAGATTTTCTTCACTATGTAAATATTAT
TTGTGTTAACATTACAAAAAGGGATCCAACAGTTGAAGTTTGAATAACATTTTCTCCCCA
GGCATGTGCTTCCATGACAAATGCTTTCCTGTGTGGAAAATGCCATATGACTATTGCACT
ACCTTCTGTGTAGACCGTCTTGGTATTGAGTCTTTCCTATGTCAAGAACTAGGGTGTCTG
TAGCTGCCAAGTTTTTATAAGTGGCTTTATTCCTCTTCGAGTAGATTTATAAAGGAGCCC
AAGATGCACTGTTAGAGAGGGGAAAAATGTTTACAGTCTATAGTGTACACACCCTATATA
TTCGTTGAAGCCAGGGCCCTATAAGAGCAGCCTGGCCTATTGCTCTCTTAGGATGACTAG
AATTTAAGTGGCCGAGTGATTCGAGCAGAAGTTTGTGTTTTCTATTTTGGGGGGTTTTTT
AGGTTAAATTTGTAAGCTATATACATGCTTTTACTACTGAAAACAAAACTACAGGGCATC
ATATTAATTAGAAATCAATAATAATAGTAGATTTAATCCATTAACTTTTTAAAAGAGTAT
ATCCACTGTTGATTTCCTTCCTGTTTTCGGAGGCACATTCCTTTATGAGTTTTTAAACCA
CCATATTCTCTTCTGCAAACAAGGGGTGCCAGTGTTGCTTAATGGAAGATAAATCATCAA
TTTAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               424-543, - strand, RNAz p=0.976665
               

               
               528-647, - strand, RNAz p=0.534071

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               424-543, - strand, RNAz p=0.976665
               

               
               528-647, - strand, RNAz p=0.534071

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               2-789, gnl|bosTau2|chr16 (42594274-42595051)
               

               
               2-789, gnl|canFam2|chr7 (23845575-23845069)
               

               
               2-789, gnl|echTel1|scaffold_304089 (33515-33032)
               

               
               2-789, gnl|hg17|chr1 (175619897-175620408)
               

               
               2-789, gnl|Hg17|chr1 (175619914-175620665)
               

               
               2-789, gnl|loxAfr1|scaffold_110305 (512-5)
               

               
               2-789, gnl|mm7|chr1 (156769201-156768768)
               

               
               2-789, gnl|Mm7|chr1 (156769193-156768541)
               

               
               2-789, gnl|monDom2|scaffold_16 (31572583-31573102)
               

               
               2-789, gnl|oryCun1|scaffold_180897 (6346-5799)
               

               
               2-789, gnl|rheMac2|chr1 (191809081-191808580)
               

               
               2-789, gnl|rn3|chr13 (72017554-72017107)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-789, gnl|bosTau2|chr16 (42594274-42595051)
               

               
               2-789, gnl|canFam2|chr7 (23845575-23845069)
               

               
               2-789, gnl|echTel1|scaffold_304089 (33515-33032)
               

               
               2-789, gnl|hg17|chr1 (175619897-175620408)
               

               
               2-789, gnl|Hg17|chr1 (175619914-175620665)
               

               
               2-789, gnl|loxAfr1|scaffold_110305 (512-5)
               

               
               2-789, gnl|mm7|chr1 (156769201-156768768)
               

               
               2-789, gnl|Mm7|chr1 (156769193-156768541)
               

               
               2-789, gnl|monDom2|scaffold_16 (31572583-31573102)
               

               
               2-789, gnl|oryCun1|scaffold_180897 (6346-5799)
               

               
               2-789, gnl|rheMac2|chr1 (191809081-191808580)
               

               
               2-789, gnl|rn3|chr13 (72017554-72017107)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nms (0.213858)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)

	424-543, - strand, RNAz p=0.976665
	528-647, - strand, RNAz p=0.534071

	2-789, gnl\|bosTau2\|chr16 (42594274-42595051)
	2-789, gnl\|canFam2\|chr7 (23845575-23845069)
	2-789, gnl\|echTel1\|scaffold_304089 (33515-33032)
	2-789, gnl\|hg17\|chr1 (175619897-175620408)
	2-789, gnl\|Hg17\|chr1 (175619914-175620665)
	2-789, gnl\|loxAfr1\|scaffold_110305 (512-5)
	2-789, gnl\|mm7\|chr1 (156769201-156768768)
	2-789, gnl\|Mm7\|chr1 (156769193-156768541)
	2-789, gnl\|monDom2\|scaffold_16 (31572583-31573102)
	2-789, gnl\|oryCun1\|scaffold_180897 (6346-5799)
	2-789, gnl\|rheMac2\|chr1 (191809081-191808580)
	2-789, gnl\|rn3\|chr13 (72017554-72017107)