Non-Coding RNA Search

Ss1.1-Pig4-TMW8053B23.3

Sequence:


               
               TCTTCAGCAGAGAGAGAATTCCTCAGGGAACCCAGCGGCTCCTCTTCTCCAGGATCCAGC
ACAGAAATGGCTTCCTCCTTCAAGCCCCGAGAATGTAACCTGTCTAAACAGGAAGGGCAG
AGCTATGGCTTCTTCCTGCGAATTGAGAAGGACACTGATGGCCACCTGGTCCGGGTGGTT
GAGAAGGGTAGCCCAGCAGAGAAGGCGGGTCTGCAGGATGGAGACAGAGTTCTCAGGATC
AATGGTGTCTTTGTGGACAAGAAAGAGCATATGCAGGTTGTGGATCTGGTCAGAAAGAGT
GGGAATTCAGTGACTTTACTAGTTCTGGATGGGGATTCCTATGAGAAAGCCATGAAAAAG
CAAGTAGATTTGAAAGAGTTGGGTCAAAGTCAGGAGTCGAGTTTGAATGATAAGAAACTA
CCTTCTGTGATGAATGGAGGAGCACAGACTTGGACCCAGCCACGGCTCTGCTACCTGGTG
AAGGAGGGGAGTAGCTATGGCTTTTCTCTGAAAACTGTCCAAGATAAAAAGGGAGTGTAC
ATGACTGATATAAAGCCTCAAGGTGTGGCTATGAAAGCTGGAGTCCTGGCTGATGATCAC
TTGATTGAAGTGAATGGGGAGAATGTAGAAGATGCCAGCCATGAGGAGGTGGTTGAAAAG
GTGAAGAAGTCCGGAAGCCGTGTTATGTTCCTGCTAGTGGACAAGGAAACTGACAAGTAC
TCACCTTTTTTTAAGATAAAAGTCAAGAGAGAAACAGCCAGTTTGAAACTGCTACCCCAC
CAGCCTCGGATTGTGGAGATGAAGAAGGGGAGCAATGGCTATGGTTTCTATTTGAGGGCA
TTTGGGGGGGGTAAAGGTCAAATTGTCAAGGACATAGATTCCAGAAGTCCAGCAGAAGAG
GCTGGCTTGAAGAACAATGACCTGGTGGTTGCTGTCAATGGCGAGTGTGTGGAGTCCCTC
GATCATGACAGTGTGGTGGAAATGATTAGAAAGGGTGGAGATCAGACTTCATTGTTGGTG
GTGGACAAAGAGACGGACAACATGTATAAACTGGCTCGTATTTCTCCTTTTCTCTACTAT
CAAAGTCAAGAACTGCCCAATGGTTCTGTCACGGAGGCCCCTGCTCCTGCTCCTCTGGAG
GTCTCCAGTCCAGACACTACAGAGGAAGTGGGAGATCATAAACCTAAACTCTGCAGGCTG
GTTAAAGGTGAAGATGGCTATGGCTTTCACTTAAATGCGATTCGGGGTCAGCCAGGCTCG
TTCGTCAAAGAGGTACAGAAGGGCGGCCCAGCTGACCTGGCTGGGCTGGAGGATGAGGAC
GTCATCATTGAAGTGAACGGAGTGAATGTGCTGGATGAGCCCTATGAGAAGGTGGTGGAC
AGAATCCAGAGCAGTGGCAAGAATGTCACGCTCCTAGTCTGTGGAAAGAAGGCCTATGAT
TATTTCCAGGCTAAGAAAATCCCTATTGTTTCCTCTATGGCTGATCCACTAGATGACGCC
CCTGATTCTAAAGAAGGAACGCTGGAGGAATCGGAGCATGACTCGCACACGGCAAAAGAA
AGAGCCAACAGTACAGCCTCTCATTCTTCTTCCAATTCTGAAGATACAGAGATGTGATGA
GAACAAGTAATGGCTTTGGCTGATAACCATTTCTGGGTATTTAATAGGAATCCTTTCCCA
AGGAATGAGCTGCCACCAGTTTACTTTCTCTGTTAGAAAAGACTCCTCTGGAAACCAGTT
CATCATATGTGATTGTCTTCTGCTGTCATCCATCTTAGGGGTGGCTACTGCACATAGCTT
ATTTATGGTCAGCTTAGGAAAAGTGAAGGCAGGAGCCAGATGCTTTTCGCATAATCTCTT
TCAAGCTTCAACTTAACTACATTTCTCTGTATGATGTTATCTCTTCTATAGGTTCTTAGA
GCATCAAAGACAATTCATAAATCTGTATATGTGAGGGCTGCTAATTAAAGTTTCTGAACA
GATAAGCCTTTTAAAATTATGCTTTTGTAAAAGAATGTTGTTGTTGCTAAAATAAATGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTCAGCAGAGAGAGAATTCCTCAGGGAACCCAGCGGCTCCTCTTCTCCAGGATCCAGC
ACAGAAATGGCTTCCTCCTTCAAGCCCCGAGAATGTAACCTGTCTAAACAGGAAGGGCAG
AGCTATGGCTTCTTCCTGCGAATTGAGAAGGACACTGATGGCCACCTGGTCCGGGTGGTT
GAGAAGGGTAGCCCAGCAGAGAAGGCGGGTCTGCAGGATGGAGACAGAGTTCTCAGGATC
AATGGTGTCTTTGTGGACAAGAAAGAGCATATGCAGGTTGTGGATCTGGTCAGAAAGAGT
GGGAATTCAGTGACTTTACTAGTTCTGGATGGGGATTCCTATGAGAAAGCCATGAAAAAG
CAAGTAGATTTGAAAGAGTTGGGTCAAAGTCAGGAGTCGAGTTTGAATGATAAGAAACTA
CCTTCTGTGATGAATGGAGGAGCACAGACTTGGACCCAGCCACGGCTCTGCTACCTGGTG
AAGGAGGGGAGTAGCTATGGCTTTTCTCTGAAAACTGTCCAAGATAAAAAGGGAGTGTAC
ATGACTGATATAAAGCCTCAAGGTGTGGCTATGAAAGCTGGAGTCCTGGCTGATGATCAC
TTGATTGAAGTGAATGGGGAGAATGTAGAAGATGCCAGCCATGAGGAGGTGGTTGAAAAG
GTGAAGAAGTCCGGAAGCCGTGTTATGTTCCTGCTAGTGGACAAGGAAACTGACAAGTAC
TCACCTTTTTTTAAGATAAAAGTCAAGAGAGAAACAGCCAGTTTGAAACTGCTACCCCAC
CAGCCTCGGATTGTGGAGATGAAGAAGGGGAGCAATGGCTATGGTTTCTATTTGAGGGCA
TTTGGGGGGGGTAAAGGTCAAATTGTCAAGGACATAGATTCCAGAAGTCCAGCAGAAGAG
GCTGGCTTGAAGAACAATGACCTGGTGGTTGCTGTCAATGGCGAGTGTGTGGAGTCCCTC
GATCATGACAGTGTGGTGGAAATGATTAGAAAGGGTGGAGATCAGACTTCATTGTTGGTG
GTGGACAAAGAGACGGACAACATGTATAAACTGGCTCGTATTTCTCCTTTTCTCTACTAT
CAAAGTCAAGAACTGCCCAATGGTTCTGTCACGGAGGCCCCTGCTCCTGCTCCTCTGGAG
GTCTCCAGTCCAGACACTACAGAGGAAGTGGGAGATCATAAACCTAAACTCTGCAGGCTG
GTTAAAGGTGAAGATGGCTATGGCTTTCACTTAAATGCGATTCGGGGTCAGCCAGGCTCG
TTCGTCAAAGAGGTACAGAAGGGCGGCCCAGCTGACCTGGCTGGGCTGGAGGATGAGGAC
GTCATCATTGAAGTGAACGGAGTGAATGTGCTGGATGAGCCCTATGAGAAGGTGGTGGAC
AGAATCCAGAGCAGTGGCAAGAATGTCACGCTCCTAGTCTGTGGAAAGAAGGCCTATGAT
TATTTCCAGGCTAAGAAAATCCCTATTGTTTCCTCTATGGCTGATCCACTAGATGACGCC
CCTGATTCTAAAGAAGGAACGCTGGAGGAATCGGAGCATGACTCGCACACGGCAAAAGAA
AGAGCCAACAGTACAGCCTCTCATTCTTCTTCCAATTCTGAAGATACAGAGATGTGATGA
GAACAAGTAATGGCTTTGGCTGATAACCATTTCTGGGTATTTAATAGGAATCCTTTCCCA
AGGAATGAGCTGCCACCAGTTTACTTTCTCTGTTAGAAAAGACTCCTCTGGAAACCAGTT
CATCATATGTGATTGTCTTCTGCTGTCATCCATCTTAGGGGTGGCTACTGCACATAGCTT
ATTTATGGTCAGCTTAGGAAAAGTGAAGGCAGGAGCCAGATGCTTTTCGCATAATCTCTT
TCAAGCTTCAACTTAACTACATTTCTCTGTATGATGTTATCTCTTCTATAGGTTCTTAGA
GCATCAAAGACAATTCATAAATCTGTATATGTGAGGGCTGCTAATTAAAGTTTCTGAACA
GATAAGCCTTTTAAAATTATGCTTTTGTAAAAGAATGTTGTTGTTGCTAAAATAAATGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55959480|emb|CAI13716.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55959480|emb|CAI13716.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               841-994, + strand, RNAz p=0.637428

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               841-994, + strand, RNAz p=0.637428

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               275-523, gnl|bosTau2|chr3 (15691209-15691457)
               

               
               275-523, gnl|Hg17|chr1 (143237380-143237631)
               

               
               275-523, gnl|Mm7|chr3 (96723233-96723484)
               


               
               659-838, gnl|bosTau2|chr3 (15701605-15701784)
               

               
               659-838, gnl|Hg17|chr1 (143242997-143243176)
               

               
               659-838, gnl|Mm7|chr3 (96727599-96727778)
               


               
               841-1054, gnl|bosTau2|chr3 (15703947-15704163)
               

               
               841-1054, gnl|Hg17|chr1 (143245440-143245658)
               

               
               841-1054, gnl|Mm7|chr3 (96728926-96729138)
               


               
               1564-2038, gnl|bosTau2|chr3 (15712685-15713157)
               

               
               1564-2038, gnl|Hg17|chr1 (143252614-143253103)
               

               
               1564-2038, gnl|Mm7|chr3 (96742674-96743085)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               275-523, gnl|bosTau2|chr3 (15691209-15691457)
               

               
               275-523, gnl|Hg17|chr1 (143237380-143237631)
               

               
               275-523, gnl|Mm7|chr3 (96723233-96723484)
               


               
               659-838, gnl|bosTau2|chr3 (15701605-15701784)
               

               
               659-838, gnl|Hg17|chr1 (143242997-143243176)
               

               
               659-838, gnl|Mm7|chr3 (96727599-96727778)
               


               
               841-1054, gnl|bosTau2|chr3 (15703947-15704163)
               

               
               841-1054, gnl|Hg17|chr1 (143245440-143245658)
               

               
               841-1054, gnl|Mm7|chr3 (96728926-96729138)
               


               
               1564-2038, gnl|bosTau2|chr3 (15712685-15713157)
               

               
               1564-2038, gnl|Hg17|chr1 (143252614-143253103)
               

               
               1564-2038, gnl|Mm7|chr3 (96742674-96743085)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               sin (2.09937)
               

               
               kid (2.07577)
               

               
               cki (1.32188)
               

               
               cje (0.826173)
               

               
               nje (0.49776)
               

               
               lun (0.451467)
               

               
               jej (0.395687)
               

               
               ill (0.351185)
               

               
               nco (0.323468)
               

               
               cte (0.29274)
               

               
               duo (0.172801)
               

               
               csk (0.140746)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (2.09937)
               

               
               kid (2.07577)
               

               
               cki (1.32188)
               

               
               cje (0.826173)
               

               
               nje (0.49776)
               

               
               lun (0.451467)
               

               
               jej (0.395687)
               

               
               ill (0.351185)
               

               
               nco (0.323468)
               

               
               cte (0.29274)
               

               
               duo (0.172801)
               

               
               csk (0.140746)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

	275-523, gnl\|bosTau2\|chr3 (15691209-15691457)
	275-523, gnl\|Hg17\|chr1 (143237380-143237631)
	275-523, gnl\|Mm7\|chr3 (96723233-96723484)

	659-838, gnl\|bosTau2\|chr3 (15701605-15701784)
	659-838, gnl\|Hg17\|chr1 (143242997-143243176)
	659-838, gnl\|Mm7\|chr3 (96727599-96727778)

	841-1054, gnl\|bosTau2\|chr3 (15703947-15704163)
	841-1054, gnl\|Hg17\|chr1 (143245440-143245658)
	841-1054, gnl\|Mm7\|chr3 (96728926-96729138)

	1564-2038, gnl\|bosTau2\|chr3 (15712685-15713157)
	1564-2038, gnl\|Hg17\|chr1 (143252614-143253103)
	1564-2038, gnl\|Mm7\|chr3 (96742674-96743085)

	sin (2.09937)
	kid (2.07577)
	cki (1.32188)
	cje (0.826173)
	nje (0.49776)
	lun (0.451467)
	jej (0.395687)
	ill (0.351185)
	nco (0.323468)
	cte (0.29274)
	duo (0.172801)
	csk (0.140746)
	ebs (0.118301)
	eje (0.0988338)