Non-Coding RNA Search

Ss1.1-Pig4-TMW8053C02.3

Sequence:


               
               GAAATACTGAAGAAGGACAGTTCCTCTGTCATCCAGTTCATGACCCGTGCCAAGGTGAAG
GTGGACCCTGCCCAAAGGGTGGTGGAGATGGCAAGTGGGAACCCGGAGGAGATGACGGTG
GTCTTTGAGGCGTTGCACAACCTGGAGCCCCGAGGCTACGTCGTGGGCTGGATCATCGCC
ATAAGCTTGCTGGTGGGGATCCTCATCTTCCTGCTGCTGGCCGTGCTGCTCTGGAAGATG
GGCTTCTTTCGCAGAAGGTACAAAGAAATTATCGAAGCTGAGAAGAACCGGAAAGAGAAT
GAAGACAGTTGGGACTGGGTCCAGAAAAACCAGTGACCTGCCACTGCCGTCCCGTGACCC
AGTCGTTCGCCTGTCGTCCCGATCTTTGTATCTTCCATATTTGGAAGAAAGAATCTTCTC
CAGATTTTTCGGAGGCCCCACTGATGCTGTTCTTGTCCTCATTCTCTCAAGCCCAGGTGC
CAACCTGAGGCAGCCACTTCGGCCAGGTCACCTGACTGGAACCACCACCACTTGCTTTTC
AGGCTGAACTCGGAACTTTGGAAAGCCCGCTGCAGAGCTGGGTACTATTTATGGAGGCAA
CACGTGTGGTCAACCCTCAGGGGAAAACTGTTACCTAAAAGTATTTTTATAAATATAAGC
CTTTTATACTGATTATGTCTTTATATTTGTATCAATGTTTTATTATTTCTATTAAATGGT
TATATAATTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAATACTGAAGAAGGACAGTTCCTCTGTCATCCAGTTCATGACCCGTGCCAAGGTGAAG
GTGGACCCTGCCCAAAGGGTGGTGGAGATGGCAAGTGGGAACCCGGAGGAGATGACGGTG
GTCTTTGAGGCGTTGCACAACCTGGAGCCCCGAGGCTACGTCGTGGGCTGGATCATCGCC
ATAAGCTTGCTGGTGGGGATCCTCATCTTCCTGCTGCTGGCCGTGCTGCTCTGGAAGATG
GGCTTCTTTCGCAGAAGGTACAAAGAAATTATCGAAGCTGAGAAGAACCGGAAAGAGAAT
GAAGACAGTTGGGACTGGGTCCAGAAAAACCAGTGACCTGCCACTGCCGTCCCGTGACCC
AGTCGTTCGCCTGTCGTCCCGATCTTTGTATCTTCCATATTTGGAAGAAAGAATCTTCTC
CAGATTTTTCGGAGGCCCCACTGATGCTGTTCTTGTCCTCATTCTCTCAAGCCCAGGTGC
CAACCTGAGGCAGCCACTTCGGCCAGGTCACCTGACTGGAACCACCACCACTTGCTTTTC
AGGCTGAACTCGGAACTTTGGAAAGCCCGCTGCAGAGCTGGGTACTATTTATGGAGGCAA
CACGTGTGGTCAACCCTCAGGGGAAAACTGTTACCTAAAAGTATTTTTATAAATATAAGC
CTTTTATACTGATTATGTCTTTATATTTGTATCAATGTTTTATTATTTCTATTAAATGGT
TATATAATTCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               350-498, - strand, RNAz p=0.853342

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               350-498, - strand, RNAz p=0.853342

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               236-730, gnl|bosTau2|chr22 (9164084-9163586)
               

               
               236-730, gnl|Hg17|chr3 (37835384-37835879)
               

               
               236-730, gnl|Mm7|chr9 (118577436-118577949)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               236-730, gnl|bosTau2|chr22 (9164084-9163586)
               

               
               236-730, gnl|Hg17|chr3 (37835384-37835879)
               

               
               236-730, gnl|Mm7|chr9 (118577436-118577949)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               liv (0.146284)
               

               
               spl (0.143184)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               spl (0.143184)

	236-730, gnl\|bosTau2\|chr22 (9164084-9163586)
	236-730, gnl\|Hg17\|chr3 (37835384-37835879)
	236-730, gnl\|Mm7\|chr9 (118577436-118577949)