Non-Coding RNA Search

Ss1.1-Pig4-TMW8053C04.5

Sequence:


               
               GTTGGCAGAAGAAGCCAATCTGATGAAAAGATTTCGCTTCTACCGTGGAGGCGGAGCCAG
TGGCGTGCGGGAGCCCGAGGGCACGACCCAATGGGATGGCAGGGTTCGCTCCCCGCAGCG
GGCGGAGCCAATGGTCGCCGCGCTCCGATTCAGAGGGCGCAGAGCCCAAGCGCGGGGCGG
GGTGGGAGGTTCCCACGGCGGAGGGGAAGATGGCGGCGGCCGTGATGCTGGCCGCCGGGC
TATGCATGGCGCGCCGGGCGCTGGCGGTTGCACGGCCGTGGGGGGCGCAGGTCCGAGGAG
CTGCAGGTGTGACTGATGGGAATGAAGTGGCCAAGGCCCAGCGGGCAGCTCCTGGGGGAG
CAGCCCCAACCATCTTCTCCCGGATCCTGGATCGAAGCCTCCCAGCTGACATTCTATATG
AGGACCAGCAGTGTCTTGTATTCCGTGATGTGGCCCCTCAGGCTCCTGTGCACTTCCTGG
TCATTCCTAAGAAGCCCATTCCCCGGATTAGCCAGGCTGAAGAAGAAGACCAGCAGCTTT
TAGGACACCTTCTCCTTGTGGCAAAGAAGACAGCAAAGGCTGAAGGACTGGGAGATGGAT
ACCGACTTGTGATCAACGATGGGAAGCTGGGTGCACAGTCTGTGTATCACCTGCACATTC
ATGTACTTGGGGGCAGACAGCTCCAGTGGCCTCCAGGTTGAACCTACCAAAGGACCAAGG
ACCCCAGACTTGGATGCTTGGACGGGGTAGGGAAATAACAGGACCCAATGATGCCAATAA
ACTTGTTCTCCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGGCAGAAGAAGCCAATCTGATGAAAAGATTTCGCTTCTACCGTGGAGGCGGAGCCAG
TGGCGTGCGGGAGCCCGAGGGCACGACCCAATGGGATGGCAGGGTTCGCTCCCCGCAGCG
GGCGGAGCCAATGGTCGCCGCGCTCCGATTCAGAGGGCGCAGAGCCCAAGCGCGGGGCGG
GGTGGGAGGTTCCCACGGCGGAGGGGAAGATGGCGGCGGCCGTGATGCTGGCCGCCGGGC
TATGCATGGCGCGCCGGGCGCTGGCGGTTGCACGGCCGTGGGGGGCGCAGGTCCGAGGAG
CTGCAGGTGTGACTGATGGGAATGAAGTGGCCAAGGCCCAGCGGGCAGCTCCTGGGGGAG
CAGCCCCAACCATCTTCTCCCGGATCCTGGATCGAAGCCTCCCAGCTGACATTCTATATG
AGGACCAGCAGTGTCTTGTATTCCGTGATGTGGCCCCTCAGGCTCCTGTGCACTTCCTGG
TCATTCCTAAGAAGCCCATTCCCCGGATTAGCCAGGCTGAAGAAGAAGACCAGCAGCTTT
TAGGACACCTTCTCCTTGTGGCAAAGAAGACAGCAAAGGCTGAAGGACTGGGAGATGGAT
ACCGACTTGTGATCAACGATGGGAAGCTGGGTGCACAGTCTGTGTATCACCTGCACATTC
ATGTACTTGGGGGCAGACAGCTCCAGTGGCCTCCAGGTTGAACCTACCAAAGGACCAAGG
ACCCCAGACTTGGATGCTTGGACGGGGTAGGGAAATAACAGGACCCAATGATGCCAATAA
ACTTGTTCTCCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8WYJ5_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8WYJ5_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               592-713, + strand, RNAz p=0.688422

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               592-713, + strand, RNAz p=0.688422

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-298, gnl|bosTau2|chr8 (28546861-28546547)
               

               
               1-298, gnl|Hg17|chr9 (35805189-35804888)
               


               
               400-713, gnl|bosTau2|chr20 (6111326-6111013)
               

               
               400-713, gnl|Hg17|chr7 (142526912-142526599)
               

               
               400-713, gnl|Mm7|chr11 (54823326-54827121)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-298, gnl|bosTau2|chr8 (28546861-28546547)
               

               
               1-298, gnl|Hg17|chr9 (35805189-35804888)
               


               
               400-713, gnl|bosTau2|chr20 (6111326-6111013)
               

               
               400-713, gnl|Hg17|chr7 (142526912-142526599)
               

               
               400-713, gnl|Mm7|chr11 (54823326-54827121)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               hlv (0.696282)
               

               
               che (0.545256)
               

               
               mas (0.42061)
               

               
               fli (0.405762)
               

               
               eye (0.341006)
               

               
               cag (0.302389)
               

               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.696282)
               

               
               che (0.545256)
               

               
               mas (0.42061)
               

               
               fli (0.405762)
               

               
               eye (0.341006)
               

               
               cag (0.302389)
               

               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	1-298, gnl\|bosTau2\|chr8 (28546861-28546547)
	1-298, gnl\|Hg17\|chr9 (35805189-35804888)

	400-713, gnl\|bosTau2\|chr20 (6111326-6111013)
	400-713, gnl\|Hg17\|chr7 (142526912-142526599)
	400-713, gnl\|Mm7\|chr11 (54823326-54827121)

	hlv (0.696282)
	che (0.545256)
	mas (0.42061)
	fli (0.405762)
	eye (0.341006)
	cag (0.302389)
	fce (0.271592)
	cov (0.264306)
	nlu (0.191681)
	ill (0.175593)
	fhi (0.169578)
	cli (0.152812)
	hyp (0.142837)
	lnt (0.142308)
	cst (0.140036)
	nmm (0.132802)
	ese (0.126502)
	eru (0.120048)
	med (0.116252)
	jca (0.11396)
	nbm (0.0993246)
	jej (0.0989218)