Non-Coding RNA Search

Ss1.1-Pig4-TMW8053C12.3

Sequence:


               
               TGAAACCATCAAAGCAGCTGAGAGGATCATGGAGGCCATTGAGCTCTATCGAGAAGAAAC
TGCAAAAATGAGAGAACACAAAGCCATTTGTAAAGCTGCAGGGAAAGAGGTTCCTCTTCC
CATCAACCCCATCCTGATGGCTTACGGCAATATCTCTCCTTCAGCTTATGTGTTGGAGAT
TTTTAAAGGAATCAAGTCAAGCGAGCTGGAGGAGTCTCTGCTTGTGCTGCCATTCTCTTA
CGTCCCAGACATTCTTAAGCTCTTTAATGAATTTATCCAGCTGGGCTCCGATATTGAACT
TCTGTGTAGGTGCCTCTTCTTTCTCCTCAGGATTCACTTTGGCCAGATCACAAGCAATCA
AATGCTTGTGCCAGTGATTGAAAAATTAAAGGAAACAACTATTTCAAAAGTCAGCCAAGT
CCGGGATGTCATCGGCTTCAACATGGCAGGTCTTGATTTCCTCAAGAGGGAATGTGAGGC
AAGAAGCGAAGTTATGTTTTTTGCTGATGCTACGAGCCACTTGGAAGAAAAGAAGAGGAA
GAGGAAAAAGAGGGAGAAGCTGATTTTAACATTCACTTAGAATTGAAATGTGGTAATTTT
TTCTTAAGGGGGACTTGCAAACTAAGCAGCAGCAGAGTTGATGTAACCTGTGAGATAAAT
AGCAGAAGTTATCATGTTGCAAAAATCTTAGGATGTGCTTCCCAGCTTTGCCTGAGGGAA
TTCCAACATAGTACGGGCTCCATTTCTTGGCTGAAACAGCTTTGTTGAAAATCTGTCCTC
TCAGAGGTGAGCCCTGCAGGAATTGTTTCCTTTATATTCCAGCAGGAAGCCAGGAAACCT
TTAAATGAGGTATTTGTTTCACTAGAGTTGAAACTAACATTTCAGAAGTTTTTCTTATTT
CTGTTTATATAGATTTGTTGGGTCATCTATTACCTCTTTGTATTTGGTTTTACTGCCTGG
TGAGGCTAATTGCCCTCTGCCCATAGATGTGGAGTCTTGAACTTAAGAGAGCTGAAAGGG
ACTGGAAAAGTTATCTGGAACAGCTTCCTTTAAGTTAACCCATTGCGGGGTTTTTTTTTT
TTAATCTGTATATAAAAATATCCTAATTGCTGTTAATACTCCCTAAGTAGTTCTTTTTTA
AAATTTTTTTATTAAAGTTGATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAACCATCAAAGCAGCTGAGAGGATCATGGAGGCCATTGAGCTCTATCGAGAAGAAAC
TGCAAAAATGAGAGAACACAAAGCCATTTGTAAAGCTGCAGGGAAAGAGGTTCCTCTTCC
CATCAACCCCATCCTGATGGCTTACGGCAATATCTCTCCTTCAGCTTATGTGTTGGAGAT
TTTTAAAGGAATCAAGTCAAGCGAGCTGGAGGAGTCTCTGCTTGTGCTGCCATTCTCTTA
CGTCCCAGACATTCTTAAGCTCTTTAATGAATTTATCCAGCTGGGCTCCGATATTGAACT
TCTGTGTAGGTGCCTCTTCTTTCTCCTCAGGATTCACTTTGGCCAGATCACAAGCAATCA
AATGCTTGTGCCAGTGATTGAAAAATTAAAGGAAACAACTATTTCAAAAGTCAGCCAAGT
CCGGGATGTCATCGGCTTCAACATGGCAGGTCTTGATTTCCTCAAGAGGGAATGTGAGGC
AAGAAGCGAAGTTATGTTTTTTGCTGATGCTACGAGCCACTTGGAAGAAAAGAAGAGGAA
GAGGAAAAAGAGGGAGAAGCTGATTTTAACATTCACTTAGAATTGAAATGTGGTAATTTT
TTCTTAAGGGGGACTTGCAAACTAAGCAGCAGCAGAGTTGATGTAACCTGTGAGATAAAT
AGCAGAAGTTATCATGTTGCAAAAATCTTAGGATGTGCTTCCCAGCTTTGCCTGAGGGAA
TTCCAACATAGTACGGGCTCCATTTCTTGGCTGAAACAGCTTTGTTGAAAATCTGTCCTC
TCAGAGGTGAGCCCTGCAGGAATTGTTTCCTTTATATTCCAGCAGGAAGCCAGGAAACCT
TTAAATGAGGTATTTGTTTCACTAGAGTTGAAACTAACATTTCAGAAGTTTTTCTTATTT
CTGTTTATATAGATTTGTTGGGTCATCTATTACCTCTTTGTATTTGGTTTTACTGCCTGG
TGAGGCTAATTGCCCTCTGCCCATAGATGTGGAGTCTTGAACTTAAGAGAGCTGAAAGGG
ACTGGAAAAGTTATCTGGAACAGCTTCCTTTAAGTTAACCCATTGCGGGGTTTTTTTTTT
TTAATCTGTATATAAAAATATCCTAATTGCTGTTAATACTCCCTAAGTAGTTCTTTTTTA
AAATTTTTTTATTAAAGTTGATTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61862700|ref|XP_592784.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61862700|ref|XP_592784.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               197-331, gnl|bosTau2|chr3 (21310935-21311069)
               

               
               197-331, gnl|Hg17|chr1 (118211728-118211862)
               

               
               197-331, gnl|Mm7|chr3 (99935129-99934995)
               


               
               424-1136, gnl|bosTau2|chr3 (21313211-21313922)
               

               
               424-1136, gnl|Hg17|chr1 (118213956-118214714)
               

               
               424-1136, gnl|Mm7|chr3 (99933660-99933020)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               197-331, gnl|bosTau2|chr3 (21310935-21311069)
               

               
               197-331, gnl|Hg17|chr1 (118211728-118211862)
               

               
               197-331, gnl|Mm7|chr3 (99935129-99934995)
               


               
               424-1136, gnl|bosTau2|chr3 (21313211-21313922)
               

               
               424-1136, gnl|Hg17|chr1 (118213956-118214714)
               

               
               424-1136, gnl|Mm7|chr3 (99933660-99933020)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               eli (0.151814)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

	197-331, gnl\|bosTau2\|chr3 (21310935-21311069)
	197-331, gnl\|Hg17\|chr1 (118211728-118211862)
	197-331, gnl\|Mm7\|chr3 (99935129-99934995)

	424-1136, gnl\|bosTau2\|chr3 (21313211-21313922)
	424-1136, gnl\|Hg17\|chr1 (118213956-118214714)
	424-1136, gnl\|Mm7\|chr3 (99933660-99933020)

	eli (0.151814)
	spl (0.143184)
	nmm (0.132802)
	eru (0.120048)
	ecc (0.115035)
	cbl (0.114797)