Non-Coding RNA Search

Ss1.1-Pig4-TMW8053C13.3

Sequence:


               
               CAGATTCTGCGACTCTGCAAATTCCAACAAAAGAAAACCAAGATTGCTCAGTTTCTAGAG
TCTGCAGCCAACATGTTTGCCGCCGCTCAGCAACTCTCACACAACATGAGTCCAGAAACT
GCGCAGCTCCTCCTCGTGGTCTCTGATGGACGCGGCCTTTTCCTTGAGGGCAAAGACCGG
GTCCTGGCAGCAGTTCAGGCCGCCCGGAACGCCAACATCTTCGTCATTTTTGTGGTGTTG
GACAATCCCAGTTCACGGGATTCAATCTTGGACATTAAGGTACCGATATTTAAAGGGCCT
GGAGAGATGCCTGAAATCCGGTCTTACATGGAAGAGTTCCCATTCCCGTTCTACATAATT
CTCCGAGACGTGAACGCGCTTCCCGAGACACTCAGCGATGCACTCAGGCAGTGGTTTGAA
CTGGTGACAGCCTCTGACCACCCATAGAACAGAACATGGTCCTAAGTGAGACTTGTAACT
GTGCTCAGAGGTCACACTGCTTGCCAGGTGCTCCCATTTGGATAACTCTTTCCGAACTCC
CAGCTCTAAACTGGTATTTTATCTTCAACCTGATTTATAAACATTCACCTAACAGCTTCT
AAAAACGTCACCGCAGCGTACATTGTTTTCCAATATGATCTCAGAGCCTAGAGGAAGCCA
GTGCTCCCTGCTGTGCCCGGGCTCCAGTCATTGTAACAAACCTGGGACAGTGAAGTAGCA
GCAGCGGCAGGTGCCTGGCCCGAGAGGAGGCTGCACCCCAGCTGTGGGGCCCGGCTGCCT
GCCTTCCCTCATGGGGACCCTGGACACCACCCTGAAGAGATGCTGCAGGAGCACAGCACC
AAGCCAGTCCTCTGGACGAAGGACTAAAGGGAACTTGCCTTTTGACCCCACTCTGAGGGA
TCAAGGCAAGCTTGGCCTTCCCAAGCCCATATTGTGCACCCAAAAGCTGTCAAGTGGCTG
AGATGGCTGTTTTCCAGACTCTGAGTGTATTTTCTAACTGTATTGCTTGTGAAAGGAACT
ACCTTTTTTTTTGAGGGTAGGAGTGTGCTCATAAACTAACCCCATATCGTGGGAGCCCAG
ATCATCAGCAAATGATCCCTGGGCTGGGTACAAAGGAAGTGGCTTCTCAGTGTCCTCCAC
ATTTGCTGCTTCGGGAGACTATGCAATGATGGAAAGGTGATTTGCCCTGTTTATTTCATC
CTCTCGGGGACACCATTCCTGTTGTTGTAGTAATTTATTTCTTTAGTTCATTTTTTTTCT
TAACAGTTAAGAGGAAGAACCCTTCCTCACTGCTTTCAAGCTGAACTGAGCCAATCTCAT
TCTAGAAAAGAAGTGCTGTATCCAGAAGAACTAAGCAGCTGCTGCTTTTTCCCAGTCAAA
ACACATCAATGGTTTTTAGGCAGTTTTTATTTGGCCAAAAGACAGTGCTTGAATACTTGA
AACTGTGTGCTTTTATTTAAGTTCTGACTGTCCAAATGTTCTTTTGTAGACAACCTGCCA
TGATGCAATCGTCTGTCCCCAAGTCTGTTATCAAGTTACACTGTGAAGTGTGCCACCCTT
TTGAGGTGGCTCTCAAGACACAGATTGCTTGTTGTTTAACCAAGTGTCCTAAGCATGTAC
CTGAAGTTATATCATTTTTTATTCTAAAAAGCTATGCAGCTTATACTCGGAAAATTATTA
AAAAATATATCACTGTTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGATTCTGCGACTCTGCAAATTCCAACAAAAGAAAACCAAGATTGCTCAGTTTCTAGAG
TCTGCAGCCAACATGTTTGCCGCCGCTCAGCAACTCTCACACAACATGAGTCCAGAAACT
GCGCAGCTCCTCCTCGTGGTCTCTGATGGACGCGGCCTTTTCCTTGAGGGCAAAGACCGG
GTCCTGGCAGCAGTTCAGGCCGCCCGGAACGCCAACATCTTCGTCATTTTTGTGGTGTTG
GACAATCCCAGTTCACGGGATTCAATCTTGGACATTAAGGTACCGATATTTAAAGGGCCT
GGAGAGATGCCTGAAATCCGGTCTTACATGGAAGAGTTCCCATTCCCGTTCTACATAATT
CTCCGAGACGTGAACGCGCTTCCCGAGACACTCAGCGATGCACTCAGGCAGTGGTTTGAA
CTGGTGACAGCCTCTGACCACCCATAGAACAGAACATGGTCCTAAGTGAGACTTGTAACT
GTGCTCAGAGGTCACACTGCTTGCCAGGTGCTCCCATTTGGATAACTCTTTCCGAACTCC
CAGCTCTAAACTGGTATTTTATCTTCAACCTGATTTATAAACATTCACCTAACAGCTTCT
AAAAACGTCACCGCAGCGTACATTGTTTTCCAATATGATCTCAGAGCCTAGAGGAAGCCA
GTGCTCCCTGCTGTGCCCGGGCTCCAGTCATTGTAACAAACCTGGGACAGTGAAGTAGCA
GCAGCGGCAGGTGCCTGGCCCGAGAGGAGGCTGCACCCCAGCTGTGGGGCCCGGCTGCCT
GCCTTCCCTCATGGGGACCCTGGACACCACCCTGAAGAGATGCTGCAGGAGCACAGCACC
AAGCCAGTCCTCTGGACGAAGGACTAAAGGGAACTTGCCTTTTGACCCCACTCTGAGGGA
TCAAGGCAAGCTTGGCCTTCCCAAGCCCATATTGTGCACCCAAAAGCTGTCAAGTGGCTG
AGATGGCTGTTTTCCAGACTCTGAGTGTATTTTCTAACTGTATTGCTTGTGAAAGGAACT
ACCTTTTTTTTTGAGGGTAGGAGTGTGCTCATAAACTAACCCCATATCGTGGGAGCCCAG
ATCATCAGCAAATGATCCCTGGGCTGGGTACAAAGGAAGTGGCTTCTCAGTGTCCTCCAC
ATTTGCTGCTTCGGGAGACTATGCAATGATGGAAAGGTGATTTGCCCTGTTTATTTCATC
CTCTCGGGGACACCATTCCTGTTGTTGTAGTAATTTATTTCTTTAGTTCATTTTTTTTCT
TAACAGTTAAGAGGAAGAACCCTTCCTCACTGCTTTCAAGCTGAACTGAGCCAATCTCAT
TCTAGAAAAGAAGTGCTGTATCCAGAAGAACTAAGCAGCTGCTGCTTTTTCCCAGTCAAA
ACACATCAATGGTTTTTAGGCAGTTTTTATTTGGCCAAAAGACAGTGCTTGAATACTTGA
AACTGTGTGCTTTTATTTAAGTTCTGACTGTCCAAATGTTCTTTTGTAGACAACCTGCCA
TGATGCAATCGTCTGTCCCCAAGTCTGTTATCAAGTTACACTGTGAAGTGTGCCACCCTT
TTGAGGTGGCTCTCAAGACACAGATTGCTTGTTGTTTAACCAAGTGTCCTAAGCATGTAC
CTGAAGTTATATCATTTTTTATTCTAAAAAGCTATGCAGCTTATACTCGGAAAATTATTA
AAAAATATATCACTGTTAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55778541|gb|AAH86440.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55778541|gb|AAH86440.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               789-940, - strand, RNAz p=0.997816
               

               
               1015-1154, - strand, RNAz p=0.792521
               

               
               1233-1384, - strand, RNAz p=0.865371

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               789-940, - strand, RNAz p=0.997816
               

               
               1015-1154, - strand, RNAz p=0.792521
               

               
               1233-1384, - strand, RNAz p=0.865371

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               251-1697, gnl|bosTau2|chr9 (33366556-33368029)
               

               
               251-1697, gnl|Hg17|chr6 (90410641-90409222)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               251-1697, gnl|bosTau2|chr9 (33366556-33368029)
               

               
               251-1697, gnl|Hg17|chr6 (90410641-90409222)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               eye (0.341006)
               

               
               nmm (0.265604)
               

               
               ecc (0.23007)
               

               
               tes (0.207814)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               ese (0.126502)
               

               
               tra (0.123092)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.341006)
               

               
               nmm (0.265604)
               

               
               ecc (0.23007)
               

               
               tes (0.207814)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               ese (0.126502)
               

               
               tra (0.123092)

	789-940, - strand, RNAz p=0.997816
	1015-1154, - strand, RNAz p=0.792521
	1233-1384, - strand, RNAz p=0.865371

	251-1697, gnl\|bosTau2\|chr9 (33366556-33368029)
	251-1697, gnl\|Hg17\|chr6 (90410641-90409222)

	eye (0.341006)
	nmm (0.265604)
	ecc (0.23007)
	tes (0.207814)
	duo (0.172801)
	fhi (0.169578)
	ski (0.146735)
	liv (0.146284)
	pty (0.142714)
	che (0.136314)
	ese (0.126502)
	tra (0.123092)