Ss1.1-Pig4-TMW8053C21.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCCGCGGCCTGGGACAGGCCAGTCCCGTTCCTTCCGCATCCTCGCCCACCTCACGGG CACCGAGTTCATGCAAGACCCGGATGAGGAGCACCTGAAAAAATCAAGCCAGGTGCCCAG GACAGAAGCCCCAGCCCCAGCCTCAGCTACACCCCAGGAACCCTGGCCTGGCCCTCCCAC CCCCAGCCCTACCAGCCGCCCACCCTGGGCTGTGGACCCTGCATTTGCTGAGCGCTATGC CCCGGACAAGACCAGCACGGTGCTGACCCGGCACACCCAGCCAGCCACACCCACGCCTAT GCAGAACCGCACCTCCATTGTGCAGGCCGCTGCTGGAGGGGGCCCTGGAGGGGGCAGCGG CAGTAATGGGAAGACTCCCGTGTGCCACCAGTGCCACAAAGTCATCCGGGGCCGTTACCT GGTGGCCCTGGGCCACGCGTACCACCCCGAGGAGTTTGTGTGCAGCCAGTGTGGAAAGGT CCTGGAAGAGGGTGGCTTCTTCGAGGAGAAGGGCTCCATCTTCTGCCCGCCCTGCTATGA TGTGCGCTATGCACCAAGCTGTGCCAAGTGCAAGAAGAAGATCACAGGCGAGATCATGCA TGCCCTGAAGATGACCTGGCACGTGCATTGCTTCACCTGCGCAGCTTGCAAGACACCCAT TCGGAACAGGGCCTTCTACATGGAGGAAGGGGTGCCCTACTGCGAGCGAGACTATGAGAA GATGTTTGGCACAAAATGCCGAGGCTGTGACTTCAAGATCGATGCCGGGGACCGCTTCCT GGAGGCGCTGGGCTTCAGCTGGCATGACACATGCTTTGTGTGCGCGATATGTCAGATCAA CCTGGAAGGAAAGACTTTCTACTCCAAGAAGGACAAGCCCCTTTGCAAGAGCCACGCCTT CTCCCATGTGTGAGCCCCTCCCATGGGCCGCTGCCCACCCAGCCCTGACTGAGGGGTCAC TGGTTCTGGAGTCATTGCCCCAGATTTCTGGGTAGGGCTAGCAAAAGTCGCCCCAACCCC AACTCCTGGCCCGAGCCCGGGGTTCCCTGGGCCCTGCCCCACCTCTTTTACCTCCTCTCA CTCCCTCCACCACCACCTCACACTGGTGCTGGCCACACCGGCCCCTGTTCACATCCAGAG CCACAATAAACCTGTATCCAGCCGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCCGCGGCCTGGGACAGGCCAGTCCCGTTCCTTCCGCATCCTCGCCCACCTCACGGG CACCGAGTTCATGCAAGACCCGGATGAGGAGCACCTGAAAAAATCAAGCCAGGTGCCCAG GACAGAAGCCCCAGCCCCAGCCTCAGCTACACCCCAGGAACCCTGGCCTGGCCCTCCCAC CCCCAGCCCTACCAGCCGCCCACCCTGGGCTGTGGACCCTGCATTTGCTGAGCGCTATGC CCCGGACAAGACCAGCACGGTGCTGACCCGGCACACCCAGCCAGCCACACCCACGCCTAT GCAGAACCGCACCTCCATTGTGCAGGCCGCTGCTGGAGGGGGCCCTGGAGGGGGCAGCGG CAGTAATGGGAAGACTCCCGTGTGCCACCAGTGCCACAAAGTCATCCGGGGCCGTTACCT GGTGGCCCTGGGCCACGCGTACCACCCCGAGGAGTTTGTGTGCAGCCAGTGTGGAAAGGT CCTGGAAGAGGGTGGCTTCTTCGAGGAGAAGGGCTCCATCTTCTGCCCGCCCTGCTATGA TGTGCGCTATGCACCAAGCTGTGCCAAGTGCAAGAAGAAGATCACAGGCGAGATCATGCA TGCCCTGAAGATGACCTGGCACGTGCATTGCTTCACCTGCGCAGCTTGCAAGACACCCAT TCGGAACAGGGCCTTCTACATGGAGGAAGGGGTGCCCTACTGCGAGCGAGACTATGAGAA GATGTTTGGCACAAAATGCCGAGGCTGTGACTTCAAGATCGATGCCGGGGACCGCTTCCT GGAGGCGCTGGGCTTCAGCTGGCATGACACATGCTTTGTGTGCGCGATATGTCAGATCAA CCTGGAAGGAAAGACTTTCTACTCCAAGAAGGACAAGCCCCTTTGCAAGAGCCACGCCTT CTCCCATGTGTGAGCCCCTCCCATGGGCCGCTGCCCACCCAGCCCTGACTGAGGGGTCAC TGGTTCTGGAGTCATTGCCCCAGATTTCTGGGTAGGGCTAGCAAAAGTCGCCCCAACCCC AACTCCTGGCCCGAGCCCGGGGTTCCCTGGGCCCTGCCCCACCTCTTTTACCTCCTCTCA CTCCCTCCACCACCACCTCACACTGGTGCTGGCCACACCGGCCCCTGTTCACATCCAGAG CCACAATAAACCTGTATCCAGCCGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 202-321, - strand, RNAz p=0.867219 | |
| 906-1132, - strand, RNAz p=0.999985 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 202-321, - strand, RNAz p=0.867219 | |
| 906-1132, - strand, RNAz p=0.999985 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 162-409, gnl|bosTau2|chr7 (21762938-21762691) | |
| 162-409, gnl|Hg17|chr5 (176849243-176848999) | |
| 162-409, gnl|Mm7|chr13 (54594086-54593844) | |
| 709-825, gnl|bosTau2|chr7 (21751156-21751040) | |
| 709-825, gnl|canFam2|chr4 (39080857-39080765) | |
| 709-825, gnl|danRer3|chrNA (134226121-134226213) | |
| 709-825, gnl|dasNov1|scaffold_12341 (44968-44876) | |
| 709-825, gnl|echTel1|scaffold_203909 (789-697) | |
| 709-825, gnl|fr1|chrUn (109643793-109643885) | |
| 709-825, gnl|galGal2|chr13_random (33860-33952) | |
| 709-825, gnl|hg17|chr5 (176843470-176843562) | |
| 709-825, gnl|Hg17|chr5 (176843591-176843475) | |
| 709-825, gnl|loxAfr1|scaffold_31532 (20881-20970) | |
| 709-825, gnl|mm7|chr13 (54586801-54586893) | |
| 709-825, gnl|Mm7|chr13 (54586922-54586806) | |
| 709-825, gnl|monDom2|scaffold_6 (17311026-17311118) | |
| 709-825, gnl|oryCun1|scaffold_200815 (2544-2450) | |
| 709-825, gnl|panTro1|chr4 (184319141-184319233) | |
| 709-825, gnl|rheMac2|chr5 (87629976-87629884) | |
| 709-825, gnl|rn3|chr17 (15183498-15183406) | |
| 709-825, gnl|tetNig1|chr1 (2357942-2358034) | |
| 709-825, gnl|xenTro1|scaffold_235 (1390997-1390905) | |
| 826-1166, gnl|bosTau2|chr7 (21750885-21750545) | |
| 826-1166, gnl|Hg17|chr5 (176843338-176843001) | |
| 826-1166, gnl|Mm7|chr13 (54586646-54586325) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 162-409, gnl|bosTau2|chr7 (21762938-21762691) | |
| 162-409, gnl|Hg17|chr5 (176849243-176848999) | |
| 162-409, gnl|Mm7|chr13 (54594086-54593844) | |
| 709-825, gnl|bosTau2|chr7 (21751156-21751040) | |
| 709-825, gnl|canFam2|chr4 (39080857-39080765) | |
| 709-825, gnl|danRer3|chrNA (134226121-134226213) | |
| 709-825, gnl|dasNov1|scaffold_12341 (44968-44876) | |
| 709-825, gnl|echTel1|scaffold_203909 (789-697) | |
| 709-825, gnl|fr1|chrUn (109643793-109643885) | |
| 709-825, gnl|galGal2|chr13_random (33860-33952) | |
| 709-825, gnl|hg17|chr5 (176843470-176843562) | |
| 709-825, gnl|Hg17|chr5 (176843591-176843475) | |
| 709-825, gnl|loxAfr1|scaffold_31532 (20881-20970) | |
| 709-825, gnl|mm7|chr13 (54586801-54586893) | |
| 709-825, gnl|Mm7|chr13 (54586922-54586806) | |
| 709-825, gnl|monDom2|scaffold_6 (17311026-17311118) | |
| 709-825, gnl|oryCun1|scaffold_200815 (2544-2450) | |
| 709-825, gnl|panTro1|chr4 (184319141-184319233) | |
| 709-825, gnl|rheMac2|chr5 (87629976-87629884) | |
| 709-825, gnl|rn3|chr17 (15183498-15183406) | |
| 709-825, gnl|tetNig1|chr1 (2357942-2358034) | |
| 709-825, gnl|xenTro1|scaffold_235 (1390997-1390905) | |
| 826-1166, gnl|bosTau2|chr7 (21750885-21750545) | |
| 826-1166, gnl|Hg17|chr5 (176843338-176843001) | |
| 826-1166, gnl|Mm7|chr13 (54586646-54586325) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| csp (0.322373) | |
| ute (0.265569) | |
| fli (0.202881) | |
| nje (0.16592) | |
| nco (0.161734) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.322373) | |
| ute (0.265569) | |
| fli (0.202881) | |
| nje (0.16592) | |
| nco (0.161734) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| nbm (0.0993246) | |
| eje (0.0988338) |