Non-Coding RNA Search

Ss1.1-Pig4-TMW8053C22.3

Sequence:


               
               AGATTGTAAAGGAGCAGATTGAATGAAGGATTTTAGTGGTGTGGATAGGTGATGTTGGGA
TGGAAAATGCTAATCAACTCCCCTTTCTTTTGTCAATTAAAATAAGCCTGTATTAAGAAC
CAAAAAGGCGGTTTTATAAAAGCAAAGTATCTAGTATTTCAGATGGCCAGGCAAGGGCAC
TTCAGATGAGGCAGTCAGAATCATTTTTCCCAGTGAGACTAGATCACAAATGGGGTGGTA
AGATCATTGAAAGCCTTTATAAATTGAAGAGCCCATTTTAATATCATAATTTGTGGAAAG
ACTAGAAGAGGGCTGAATAAATGTGTTGGAATCTCTAATTTTATACGTTTTTCTTTTCCT
GAGGAACTTGATTTTTCTGTCCCTGAATCGCCTTGTCACAATTGGGTCTGTTCCTTTTAC
TACCACTTTTGAGTCCATATATGAAATCATTAAAGTTGGATGATCAGTTTTTTATAAAAA
TATATATTTTTGTCCAAAAAAAGGCATACATATGTGATTATGGCTAAATCAAAGGTAACT
GGAATGTATATACTTTTGCTAATGTTCCAGCAACACTGCTATTATACTATCTATCCAAAT
TTTTATTGTAACAGAACCTCTTTAAGCAATTGGTGACAGCTATGGGACTTTTCCCATATC
TTCTGCTATAATTATTCTTTGCAGAACTAGGAAAGATTTTTTTTCTCAAGACTGCTGTAT
GGTTTCCTTTAAAAGAAAAAACCTCCAGTATTTTTGTTTTTAGCAGTCATCATTTACACT
TTGCACTGATTAACTTGGCAAGGCTTCCTTCCGTGTTTATTCCTGTAGCCACCATGTAAC
AGGAACATTCGAAAGTGAAAAATATTTATTTTTCTTTTGTTTGGTGTCTTTTAAAAAAAA
TTGAAAAGGTAAACATCCATCAGAACCTTAAGTTAAATATAAATGTTAGAACTCAACGAT
GTTGGCTTTTACATTTTATACAGTTTTTGTTTTGGTTTTGAGTGTATATAATATGGCATT
AGCAATATGGTTCCAATAGAGAGGGGTTAAATATATATTATTAAAGGAGACCTGTGGCAG
TCAAAGATTTTATTGATTTAATGGAAAATAAAGGAAATTAATTAAAATATTTTTGTTTTC
CTGCTGTAATTCTGCATTAAGCTCACATGAAAATCATGATTCTAGAGTTTGGAATGCAAA
ATTAATTGTTTCAACCTCAAGCTGGGAATATTTTTTAAAATAAATACTATAATATAGGTA
TCAAATTATTACCTCCCCTACTTTGTGTTGATTTTTTTTTATTAAATTGATAAAACTTTG
TTTCCATTGTATTCATAAAGTTCTGTTATACGTAACATTAAAATGTTCATTAAAATCAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATTGTAAAGGAGCAGATTGAATGAAGGATTTTAGTGGTGTGGATAGGTGATGTTGGGA
TGGAAAATGCTAATCAACTCCCCTTTCTTTTGTCAATTAAAATAAGCCTGTATTAAGAAC
CAAAAAGGCGGTTTTATAAAAGCAAAGTATCTAGTATTTCAGATGGCCAGGCAAGGGCAC
TTCAGATGAGGCAGTCAGAATCATTTTTCCCAGTGAGACTAGATCACAAATGGGGTGGTA
AGATCATTGAAAGCCTTTATAAATTGAAGAGCCCATTTTAATATCATAATTTGTGGAAAG
ACTAGAAGAGGGCTGAATAAATGTGTTGGAATCTCTAATTTTATACGTTTTTCTTTTCCT
GAGGAACTTGATTTTTCTGTCCCTGAATCGCCTTGTCACAATTGGGTCTGTTCCTTTTAC
TACCACTTTTGAGTCCATATATGAAATCATTAAAGTTGGATGATCAGTTTTTTATAAAAA
TATATATTTTTGTCCAAAAAAAGGCATACATATGTGATTATGGCTAAATCAAAGGTAACT
GGAATGTATATACTTTTGCTAATGTTCCAGCAACACTGCTATTATACTATCTATCCAAAT
TTTTATTGTAACAGAACCTCTTTAAGCAATTGGTGACAGCTATGGGACTTTTCCCATATC
TTCTGCTATAATTATTCTTTGCAGAACTAGGAAAGATTTTTTTTCTCAAGACTGCTGTAT
GGTTTCCTTTAAAAGAAAAAACCTCCAGTATTTTTGTTTTTAGCAGTCATCATTTACACT
TTGCACTGATTAACTTGGCAAGGCTTCCTTCCGTGTTTATTCCTGTAGCCACCATGTAAC
AGGAACATTCGAAAGTGAAAAATATTTATTTTTCTTTTGTTTGGTGTCTTTTAAAAAAAA
TTGAAAAGGTAAACATCCATCAGAACCTTAAGTTAAATATAAATGTTAGAACTCAACGAT
GTTGGCTTTTACATTTTATACAGTTTTTGTTTTGGTTTTGAGTGTATATAATATGGCATT
AGCAATATGGTTCCAATAGAGAGGGGTTAAATATATATTATTAAAGGAGACCTGTGGCAG
TCAAAGATTTTATTGATTTAATGGAAAATAAAGGAAATTAATTAAAATATTTTTGTTTTC
CTGCTGTAATTCTGCATTAAGCTCACATGAAAATCATGATTCTAGAGTTTGGAATGCAAA
ATTAATTGTTTCAACCTCAAGCTGGGAATATTTTTTAAAATAAATACTATAATATAGGTA
TCAAATTATTACCTCCCCTACTTTGTGTTGATTTTTTTTTATTAAATTGATAAAACTTTG
TTTCCATTGTATTCATAAAGTTCTGTTATACGTAACATTAAAATGTTCATTAAAATCAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|45478470|gb|AAS66447.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|45478470|gb|AAS66447.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1379, gnl|bosTau2|chr7 (47039465-47040833)
               

               
               1-1379, gnl|Hg17|chr5 (157147230-157145873)
               

               
               1-1379, gnl|Mm7|chr11 (45866042-45867378)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1379, gnl|bosTau2|chr7 (47039465-47040833)
               

               
               1-1379, gnl|Hg17|chr5 (157147230-157145873)
               

               
               1-1379, gnl|Mm7|chr11 (45866042-45867378)

Expressed library(ies): 24 entry(ies)

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Expressed library(ies): 24 entry(ies)

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               mgp (0.922722)
               

               
               mcp (0.511945)
               

               
               tes (0.415628)
               

               
               tra (0.369276)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               fco (0.314416)
               

               
               tbr (0.308356)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               duo (0.172801)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.922722)
               

               
               mcp (0.511945)
               

               
               tes (0.415628)
               

               
               tra (0.369276)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               fco (0.314416)
               

               
               tbr (0.308356)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               duo (0.172801)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	1-1379, gnl\|bosTau2\|chr7 (47039465-47040833)
	1-1379, gnl\|Hg17\|chr5 (157147230-157145873)
	1-1379, gnl\|Mm7\|chr11 (45866042-45867378)

	mgp (0.922722)
	mcp (0.511945)
	tes (0.415628)
	tra (0.369276)
	sin (0.349895)
	rec (0.346141)
	fco (0.314416)
	tbr (0.308356)
	mas (0.210305)
	aor (0.195274)
	mgm (0.180343)
	gul (0.177588)
	duo (0.172801)
	lun (0.150489)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	hyp (0.142837)
	nca (0.136874)
	ste (0.135208)
	pla (0.133672)
	sug (0.127291)
	ecc (0.115035)
	nbm (0.0993246)