Non-Coding RNA Search

Ss1.1-Pig4-TMW8053D01.3

Sequence:


               
               GGCGGAGGCCGGGCTTGTGGGGTCCCCGGAGTTGGGGTTCTGTTCCCGGCCGCGAGGTGA
GCCACTCGGACTCGTGGGCCGTCCGAGGCCCCAGTGTTCCTTCGCTGGCGGGCTTGTGGG
GTCCCCGGAGTTGGGGTTCTGTTCCCGGCCGCGAGATTTCTGACCAGGATTGTTAAAATG
AGTCTGCGGAAGCAAACACCCAGTGACTTCCTAAAGCAAATCATTGGACGACCAGTAGTG
GTAAAATTAAATTCTGGAGTGGATTATCGAGGGGTCCTGGCGTGCCTGGACGGCTACATG
AACATAGCCTTGGAACAGACGGAGGAGTATGTAAACGGACAGCTGAAGAACAAGTACGGG
GACGCATTTATCCGAGGAAACAATGTGTTGTACATAAGTACCCAGAAGAGGAGGATGTAA
AGTCACCAAGAGTACAATACTTTTCGTACTGGGATATATTTTTTTATTAAGTTTTTTGAT
TCTTTTGTCATGTAATTTGTCCTATTTTGTAACAGTTGTGATTTTTCACTGACATGTGAA
TAAGATAAATATATACAATTGTGGATTTAACTGTAAAGTGTTCTTTCATATTCAAGTTGC
AGTCGTTTTCTTTTATCTTATGCCAGTGTACAGGAGACACAGTTTAAAAGAAAGAAAAGA
GAATCAGTTTCTCCCTGTATGATTTGTAATTGAAGTTGCAAGCAATGCCGTTTGATTTGA
CTGCTTTACTGGTTGAACTGACTGAGGATAATTAAAATATCATAGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGAGGCCGGGCTTGTGGGGTCCCCGGAGTTGGGGTTCTGTTCCCGGCCGCGAGGTGA
GCCACTCGGACTCGTGGGCCGTCCGAGGCCCCAGTGTTCCTTCGCTGGCGGGCTTGTGGG
GTCCCCGGAGTTGGGGTTCTGTTCCCGGCCGCGAGATTTCTGACCAGGATTGTTAAAATG
AGTCTGCGGAAGCAAACACCCAGTGACTTCCTAAAGCAAATCATTGGACGACCAGTAGTG
GTAAAATTAAATTCTGGAGTGGATTATCGAGGGGTCCTGGCGTGCCTGGACGGCTACATG
AACATAGCCTTGGAACAGACGGAGGAGTATGTAAACGGACAGCTGAAGAACAAGTACGGG
GACGCATTTATCCGAGGAAACAATGTGTTGTACATAAGTACCCAGAAGAGGAGGATGTAA
AGTCACCAAGAGTACAATACTTTTCGTACTGGGATATATTTTTTTATTAAGTTTTTTGAT
TCTTTTGTCATGTAATTTGTCCTATTTTGTAACAGTTGTGATTTTTCACTGACATGTGAA
TAAGATAAATATATACAATTGTGGATTTAACTGTAAAGTGTTCTTTCATATTCAAGTTGC
AGTCGTTTTCTTTTATCTTATGCCAGTGTACAGGAGACACAGTTTAAAAGAAAGAAAAGA
GAATCAGTTTCTCCCTGTATGATTTGTAATTGAAGTTGCAAGCAATGCCGTTTGATTTGA
CTGCTTTACTGGTTGAACTGACTGAGGATAATTAAAATATCATAGAGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|20987896|gb|AAH30427.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|20987896|gb|AAH30427.1|

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               110-745, gnl|bosTau2|chr2 (16057723-16057090)
               

               
               110-745, gnl|Hg17|chr18 (57436846-57435810)
               


               
               490-615, gnl|bosTau2|chr16 (11564797-11564918)
               

               
               490-615, gnl|Hg17|chr4 (147468491-147468629)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               110-745, gnl|bosTau2|chr2 (16057723-16057090)
               

               
               110-745, gnl|Hg17|chr18 (57436846-57435810)
               


               
               490-615, gnl|bosTau2|chr16 (11564797-11564918)
               

               
               490-615, gnl|Hg17|chr4 (147468491-147468629)

Expressed library(ies): 38 entry(ies)

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Expressed library(ies): 38 entry(ies)

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               cte (0.58548)
               

               
               cje (0.495704)
               

               
               cki (0.495704)
               

               
               cbe (0.478469)
               

               
               fhi (0.339155)
               

               
               cst (0.280073)
               

               
               thg (0.253582)
               

               
               ebs (0.236602)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 38 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               cje (0.495704)
               

               
               cki (0.495704)
               

               
               cbe (0.478469)
               

               
               fhi (0.339155)
               

               
               cst (0.280073)
               

               
               thg (0.253582)
               

               
               ebs (0.236602)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	110-745, gnl\|bosTau2\|chr2 (16057723-16057090)
	110-745, gnl\|Hg17\|chr18 (57436846-57435810)

	490-615, gnl\|bosTau2\|chr16 (11564797-11564918)
	490-615, gnl\|Hg17\|chr4 (147468491-147468629)

	cte (0.58548)
	cje (0.495704)
	cki (0.495704)
	cbe (0.478469)
	fhi (0.339155)
	cst (0.280073)
	thg (0.253582)
	ebs (0.236602)
	mgp (0.230681)
	nms (0.213858)
	fli (0.202881)
	fcc (0.197785)
	aor (0.195274)
	col (0.195008)
	cmu (0.186393)
	sto (0.179824)
	fty (0.17584)
	ton (0.1755)
	duo (0.172801)
	cut (0.169924)
	nje (0.16592)
	mga (0.160205)
	lun (0.150489)
	lnt (0.142308)
	csk (0.140746)
	hlv (0.139256)
	nca (0.136874)
	ssp (0.13552)
	ste (0.135208)
	lyg (0.133103)
	sug (0.127291)
	eep (0.122564)
	med (0.116252)
	jca (0.11396)
	spc (0.113366)
	cty (0.10408)
	nbm (0.0993246)
	eje (0.0988338)