Non-Coding RNA Search

Ss1.1-Pig4-TMW8053D18.3

Sequence:


               
               CGGCCGCCGGGGAGGTTCGAAAAAATGGCCAAAAGAATTGCCGAGAAGGAATTGACAGAC
AGAAATTGGGATCAAGAAGATGAAGCAGAAGAGGTGGGAACATTCTCAGTGGCCAGTGAG
GAGGTCTTGAAGAATAGAGCCATAAAGAAAGCAAAACGTAGAAATGTTGGATTTGAATCT
GATAGTGGAGGGGCCTTTAAAGGTTTTAAAGGTTTGGTTGTACCTTCTGGAGGAGGCGGG
TTTTCTGGATTTGGTAACAGTGCTGGAGGGAAGCCCTTGGAAGGCCTGTCAAACGGAAGC
AGCGTGACTGCCGCCCCTCCCTTCTCCAGCTCGAGGGCGGCCACCGAGGCCAAGACCACC
TTCGGCTCTGTTGCTGTGAATGGCCCTGCTTCCTCGGTTGATAAAAAGATGTCAAGTCCT
AAAACTAATGGTGACAGTCAGCAGCCCTCTGCCTCCGGCCTTGCCTCCAGCACAGCCTGC
CCTGGGAATGCCTATCACAAGCAGTTGGCAGCCTTAAACTGCTCTGTTCGGGACTGGATC
GTGAAGCACGTGAATACAAACCCGCTCTGCGATCTGACCCCCATCTTTAAAGACTATGAG
AAATACTTAGCAAGCATCGAGCAGCAACATGGGAACAGTGGTAGCAGTCATTCTGAAAGT
GAAAAAAACAAAATAGCAGTTGAAACACAATCTCCTTCTCTCTTTGGTTCAAAGTTACAG
CAGGAGTCAACCTTTTTGTTTCATGGCAGCACAACTGAAGCTGCATCAGAGAAGAAGATG
GAGGCTCTGTCTGAGAAGAACAAGGAGCCATCACTAGGAGCAGCAAGTGCCTCGTTTAAT
TTTGGCAAGAAAATCGATAGCTCTGTGTTGGGCTCCTTAAACTCTGGCCCATTAACTGGC
TTTTCATTTTCTTCTGGAAACTCCAGTTTGTTTGGCAAAGATACTACCCCGAGTAAACCA
GTTTCTTCACCATTTTCCGCTAAAACACTGGAGACCCGAGCAGAAGGTGGCGGGAATGAA
TGCAGAGGCGGAGATGAAGAGGAGAATGACGAGCCACCCAAAGTAGTGGTTACTGAAGTA
AAAGAAGAAGATGCTTTTTACTCCAAGAAGTGTAAACTATTTTACAAGAAAGACAATGAA
TTTAAAGAGAAAGGTGTGGGTACTCTGCATTTAAAACATACAGCCAATCAGAAGACACAA
CTTTTAGTGCGCGCAGAAACCAATTTAGGCAACATCCTGCTCAACGTTCTGATTCCGCCC
AACATGCCGTGTAGCCGCACGGGGAAGAACAACGTGCTGGTCCTGCTCATTCCGAACCCA
CCCATCGATGCCACCAACGCCTCCGTCCCGGTCACCATGTTAATTCGGGTGAAAACCAGC
GAGGACGCAGATGAGTTGCACAAAATTTTACTGGAGAAGAAGGATTCCTGAACACGCTTC
CCCTGAGGAGCTGTTGCCAAGTTGCTGCTTCCCCACTGCCCTTTAAACTTAGTTTTCTTC
TCTTCTTTGACATTCTAGAACTTAGAGATAACTTAAAACTTTTGTGAGGAAGATAAATAT
GGCCAATAAAACCTTTAATATTACCTGTCAAGAAACTGTATTCTCCCTTCTTAAAAGCTA
TCTATCTAATGTGTAAAATATATTTGAAAGAAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCCGCCGGGGAGGTTCGAAAAAATGGCCAAAAGAATTGCCGAGAAGGAATTGACAGAC
AGAAATTGGGATCAAGAAGATGAAGCAGAAGAGGTGGGAACATTCTCAGTGGCCAGTGAG
GAGGTCTTGAAGAATAGAGCCATAAAGAAAGCAAAACGTAGAAATGTTGGATTTGAATCT
GATAGTGGAGGGGCCTTTAAAGGTTTTAAAGGTTTGGTTGTACCTTCTGGAGGAGGCGGG
TTTTCTGGATTTGGTAACAGTGCTGGAGGGAAGCCCTTGGAAGGCCTGTCAAACGGAAGC
AGCGTGACTGCCGCCCCTCCCTTCTCCAGCTCGAGGGCGGCCACCGAGGCCAAGACCACC
TTCGGCTCTGTTGCTGTGAATGGCCCTGCTTCCTCGGTTGATAAAAAGATGTCAAGTCCT
AAAACTAATGGTGACAGTCAGCAGCCCTCTGCCTCCGGCCTTGCCTCCAGCACAGCCTGC
CCTGGGAATGCCTATCACAAGCAGTTGGCAGCCTTAAACTGCTCTGTTCGGGACTGGATC
GTGAAGCACGTGAATACAAACCCGCTCTGCGATCTGACCCCCATCTTTAAAGACTATGAG
AAATACTTAGCAAGCATCGAGCAGCAACATGGGAACAGTGGTAGCAGTCATTCTGAAAGT
GAAAAAAACAAAATAGCAGTTGAAACACAATCTCCTTCTCTCTTTGGTTCAAAGTTACAG
CAGGAGTCAACCTTTTTGTTTCATGGCAGCACAACTGAAGCTGCATCAGAGAAGAAGATG
GAGGCTCTGTCTGAGAAGAACAAGGAGCCATCACTAGGAGCAGCAAGTGCCTCGTTTAAT
TTTGGCAAGAAAATCGATAGCTCTGTGTTGGGCTCCTTAAACTCTGGCCCATTAACTGGC
TTTTCATTTTCTTCTGGAAACTCCAGTTTGTTTGGCAAAGATACTACCCCGAGTAAACCA
GTTTCTTCACCATTTTCCGCTAAAACACTGGAGACCCGAGCAGAAGGTGGCGGGAATGAA
TGCAGAGGCGGAGATGAAGAGGAGAATGACGAGCCACCCAAAGTAGTGGTTACTGAAGTA
AAAGAAGAAGATGCTTTTTACTCCAAGAAGTGTAAACTATTTTACAAGAAAGACAATGAA
TTTAAAGAGAAAGGTGTGGGTACTCTGCATTTAAAACATACAGCCAATCAGAAGACACAA
CTTTTAGTGCGCGCAGAAACCAATTTAGGCAACATCCTGCTCAACGTTCTGATTCCGCCC
AACATGCCGTGTAGCCGCACGGGGAAGAACAACGTGCTGGTCCTGCTCATTCCGAACCCA
CCCATCGATGCCACCAACGCCTCCGTCCCGGTCACCATGTTAATTCGGGTGAAAACCAGC
GAGGACGCAGATGAGTTGCACAAAATTTTACTGGAGAAGAAGGATTCCTGAACACGCTTC
CCCTGAGGAGCTGTTGCCAAGTTGCTGCTTCCCCACTGCCCTTTAAACTTAGTTTTCTTC
TCTTCTTTGACATTCTAGAACTTAGAGATAACTTAAAACTTTTGTGAGGAAGATAAATAT
GGCCAATAAAACCTTTAATATTACCTGTCAAGAAACTGTATTCTCCCTTCTTAAAAGCTA
TCTATCTAATGTGTAAAATATATTTGAAAGAAATTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               NUP50_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               NUP50_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               837-996, - strand, RNAz p=0.912232

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               837-996, - strand, RNAz p=0.912232

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               364-1028, gnl|bosTau2|chr5 (72972302-72972957)
               

               
               364-1028, gnl|Hg17|chr22 (43894655-43895319)
               

               
               364-1028, gnl|Mm7|chr15 (85017184-85017845)
               


               
               1227-1653, gnl|bosTau2|chr5 (72977607-72978040)
               

               
               1227-1653, gnl|Hg17|chr22 (43900869-43901301)
               

               
               1227-1653, gnl|Mm7|chr15 (85021965-85022376)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               364-1028, gnl|bosTau2|chr5 (72972302-72972957)
               

               
               364-1028, gnl|Hg17|chr22 (43894655-43895319)
               

               
               364-1028, gnl|Mm7|chr15 (85017184-85017845)
               


               
               1227-1653, gnl|bosTau2|chr5 (72977607-72978040)
               

               
               1227-1653, gnl|Hg17|chr22 (43900869-43901301)
               

               
               1227-1653, gnl|Mm7|chr15 (85021965-85022376)

Expressed library(ies): 33 entry(ies)

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Expressed library(ies): 33 entry(ies)

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               tes (1.24688)
               

               
               cte (0.58548)
               

               
               pro (0.512033)
               

               
               ldo (0.485013)
               

               
               med (0.465008)
               

               
               sme (0.305437)
               

               
               cst (0.280073)
               

               
               lyg (0.266205)
               

               
               thg (0.253582)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (1.24688)
               

               
               cte (0.58548)
               

               
               pro (0.512033)
               

               
               ldo (0.485013)
               

               
               med (0.465008)
               

               
               sme (0.305437)
               

               
               cst (0.280073)
               

               
               lyg (0.266205)
               

               
               thg (0.253582)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	364-1028, gnl\|bosTau2\|chr5 (72972302-72972957)
	364-1028, gnl\|Hg17\|chr22 (43894655-43895319)
	364-1028, gnl\|Mm7\|chr15 (85017184-85017845)

	1227-1653, gnl\|bosTau2\|chr5 (72977607-72978040)
	1227-1653, gnl\|Hg17\|chr22 (43900869-43901301)
	1227-1653, gnl\|Mm7\|chr15 (85021965-85022376)

	tes (1.24688)
	cte (0.58548)
	pro (0.512033)
	ldo (0.485013)
	med (0.465008)
	sme (0.305437)
	cst (0.280073)
	lyg (0.266205)
	thg (0.253582)
	aor (0.195274)
	sto (0.179824)
	fty (0.17584)
	sin (0.174948)
	rec (0.17307)
	cki (0.165235)
	cje (0.165235)
	mga (0.160205)
	tbr (0.154178)
	cag (0.151194)
	bfe (0.149858)
	ski (0.146735)
	lin (0.145603)
	spl (0.143184)
	csk (0.140746)
	nca (0.136874)
	che (0.136314)
	pla (0.133672)
	bla (0.124347)
	tra (0.123092)
	eep (0.122564)
	eru (0.120048)
	spc (0.113366)
	nbm (0.0993246)