Non-Coding RNA Search

Ss1.1-Pig4-TMW8053D24.5

Sequence:


               
               GGTCGGTACAAGGCTTTAAAAGGGGCCTTGAAAATTAAGCTTCATTCGTGTCATAGTGAA
TCCACCTCTGCTTGTAACGGAGGACTGATGCTTCAGTGTGGGTATCCAGAAAGACACATC
AGCCTATCTGAGGCAGATGTGGACTGCAAGCAGCTTAACTTTAGGGCCATTATGTGTCTG
AAAATGTATTTAGTTGGTGGGAGTATGACCTTTAAGATCGCCTCTGTCAACTAATGTATT
TCTCAAGATGAGGCCCAGCAACCCAGCGGGGTCCTCGATTATATAAGAAATGAAGATTCC
TGGTTCGTGGGCCAATCTGGGGACTCTCAGAGCAGGTAGATTCTGCCATCCGCCCACCGC
CGCCTGCGGGCCACCCCCAAGGCATACCTTGGAGGCCAGAGGTGGGGCTGGTTACCTGTC
TTTGGGCCCAAGGCTTCCCAGCATCTTGGGGGAGACCTGCCATTGTGACGTTTTCTGAGG
TCTGAGCTGCCTCCCAGGTCCCACTGGCTTTGGTGGGCCCCGCTGCACTTTTCTTCCATG
CTGTTTGTGTTTGGAATTTTGTCGTTTTTAGCTGAGACCAAATTAATCCTCGGTGCACAC
GGCAAGCTTGAAACTTGCTGTTATTTACCGAGCTGCCCCCCATGGAATGGGGCCTTTGTC
GCGGGGCCTGCCCGCCCCTCCTTTGCTGTCGCAGTGGTGTCTGTTGGTATTGTTAGGGTT
GTCAGTGGGATCACACTGGCTTTTACTATCATGTCTTTCATGAACCAAGTTGGTTTGGGG
TAGAATCACCATATAATTTACTGCCCAAACTGAGACTTTGCGAGTGAAAGGAGATGCTCT
TAATTATTATGCCAGGTCAACAGGCATAAGCCGTAACCGTCTCAGGCACCCTGGGATGTG
CGGTCACCCGAGCTATGGGGAACCTGAGTCTAGGTGGTCTGTACTTGTGCAGACCGGCCG
CATATGTGTTCGTGTATGTTCGTGTGGGTTCCCTGTGAAGTGGGGCTCAGATAACTGGAT
ATGAGGCCGGAGGGAAGTGTGGCTTGCTACTCTGTTACGTTAACATGCTTTTCTAAAACT
GCCTCACTGGTTAATTCATTTACTCCTTCATTCATTGACTGTTTTTGTTCCCTTCCATTC
ACTTTGTACTCATTTTTTTTTCCATTAAATTTTGCATTTATTTTGAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCGGTACAAGGCTTTAAAAGGGGCCTTGAAAATTAAGCTTCATTCGTGTCATAGTGAA
TCCACCTCTGCTTGTAACGGAGGACTGATGCTTCAGTGTGGGTATCCAGAAAGACACATC
AGCCTATCTGAGGCAGATGTGGACTGCAAGCAGCTTAACTTTAGGGCCATTATGTGTCTG
AAAATGTATTTAGTTGGTGGGAGTATGACCTTTAAGATCGCCTCTGTCAACTAATGTATT
TCTCAAGATGAGGCCCAGCAACCCAGCGGGGTCCTCGATTATATAAGAAATGAAGATTCC
TGGTTCGTGGGCCAATCTGGGGACTCTCAGAGCAGGTAGATTCTGCCATCCGCCCACCGC
CGCCTGCGGGCCACCCCCAAGGCATACCTTGGAGGCCAGAGGTGGGGCTGGTTACCTGTC
TTTGGGCCCAAGGCTTCCCAGCATCTTGGGGGAGACCTGCCATTGTGACGTTTTCTGAGG
TCTGAGCTGCCTCCCAGGTCCCACTGGCTTTGGTGGGCCCCGCTGCACTTTTCTTCCATG
CTGTTTGTGTTTGGAATTTTGTCGTTTTTAGCTGAGACCAAATTAATCCTCGGTGCACAC
GGCAAGCTTGAAACTTGCTGTTATTTACCGAGCTGCCCCCCATGGAATGGGGCCTTTGTC
GCGGGGCCTGCCCGCCCCTCCTTTGCTGTCGCAGTGGTGTCTGTTGGTATTGTTAGGGTT
GTCAGTGGGATCACACTGGCTTTTACTATCATGTCTTTCATGAACCAAGTTGGTTTGGGG
TAGAATCACCATATAATTTACTGCCCAAACTGAGACTTTGCGAGTGAAAGGAGATGCTCT
TAATTATTATGCCAGGTCAACAGGCATAAGCCGTAACCGTCTCAGGCACCCTGGGATGTG
CGGTCACCCGAGCTATGGGGAACCTGAGTCTAGGTGGTCTGTACTTGTGCAGACCGGCCG
CATATGTGTTCGTGTATGTTCGTGTGGGTTCCCTGTGAAGTGGGGCTCAGATAACTGGAT
ATGAGGCCGGAGGGAAGTGTGGCTTGCTACTCTGTTACGTTAACATGCTTTTCTAAAACT
GCCTCACTGGTTAATTCATTTACTCCTTCATTCATTGACTGTTTTTGTTCCCTTCCATTC
ACTTTGTACTCATTTTTTTTTCCATTAAATTTTGCATTTATTTTGAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               5-123, + strand, RNAz p=0.850904
               

               
               888-1005, - strand, RNAz p=0.9318

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-123, + strand, RNAz p=0.850904
               

               
               888-1005, - strand, RNAz p=0.9318

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of D86957, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of D86957, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-1186, gnl|bosTau2|chr7 (17317577-17318758)
               

               
               5-1186, gnl|Hg17|chr5 (132120751-132119595)
               

               
               5-1186, gnl|Mm7|chr11 (53499620-53500852)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1186, gnl|bosTau2|chr7 (17317577-17318758)
               

               
               5-1186, gnl|Hg17|chr5 (132120751-132119595)
               

               
               5-1186, gnl|Mm7|chr11 (53499620-53500852)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               cbe (0.478469)
               

               
               hea (0.408998)
               

               
               eye (0.341006)
               

               
               cut (0.339847)
               

               
               vin (0.332557)
               

               
               cje (0.330469)
               

               
               fce (0.271592)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               hea (0.408998)
               

               
               eye (0.341006)
               

               
               cut (0.339847)
               

               
               vin (0.332557)
               

               
               cje (0.330469)
               

               
               fce (0.271592)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

	5-123, + strand, RNAz p=0.850904
	888-1005, - strand, RNAz p=0.9318

	5-1186, gnl\|bosTau2\|chr7 (17317577-17318758)
	5-1186, gnl\|Hg17\|chr5 (132120751-132119595)
	5-1186, gnl\|Mm7\|chr11 (53499620-53500852)

	cbe (0.478469)
	hea (0.408998)
	eye (0.341006)
	cut (0.339847)
	vin (0.332557)
	cje (0.330469)
	fce (0.271592)
	cmu (0.186393)
	fbs (0.175346)
	cag (0.151194)
	hyp (0.142837)
	che (0.136314)
	kid (0.129735)
	ova (0.129132)
	thg (0.126791)
	pgl (0.118483)
	spc (0.113366)