Non-Coding RNA Search

Ss1.1-Pig4-TMW8053E01.3

Sequence:


               
               GTCTGAGGTGATAAAAGGACAGACCATAGAAGTCAGTTGTCAATCCATAAACGGAACCTC
GCCCATTTCCTACCAACTTTTAAAAGGAAGTGACCTTCTGGCGAGTCAGAACGTGAGCTC
AAACGAGCCCGCGGTATTCAAAGATAACCCAACCAAAGACGTGGAATACCAGTGCATCGC
CGATAATTGCCATTCCCACGCCGGCATGCCCAGCAAAGTTCTGCGGGTCAAGGTGATAGC
CCCAGTGGAGGAAGTCAAGCTCTCTATTCTCCTGAGCGAGGAGGTGGAGTCTGGGCAGGC
CATTGTGCTTCAATGCTCCGTGAAAGAAGGATCTGGCCCCATCACGTACAAGTTTTACAA
AGAAAAGGAGAACAAGCCCTTCCACCAAGTCACCTTGAATGACACCCAGGCCATTTGGCA
CAAGCCAAAGGCTAGCAAGGATCAGGAGGGACAGTATTATTGCCTGGCCTCCAACAGAGC
CACCCCTTCCAAAAACTTCCTCCAAAGCAATATACTGGCAGTCAGAGTCTATCTTGCCCC
CTGGAAGAAAGGACTCATCGCAGTGGTTGTCATCGCAGTGATCATTGCCGTCTTGTTACT
TGGGGCCAGATTCTATTTTCTCAAGAAATCCAAGGCCAAGCAGATGCCCGTGGAGATGTG
CAGGCCAGCAGCACCACTTCTGAACTCCAACAATGAGAAGACATTGTCAGATCCCAATAC
TGAAGCCAACAGACACTATGGTTACAATGAAGATGTTGGAAACCATGCAATGAAACCATT
AAATGAAAACAAAGAGCCTCTGACCTTGGACGTGGAGTACACGGAAGTGGAAGTGACCTC
CCCTGAGCCTCACCGAGGTCTGGGAACAAAGGGCACGGAGACAGTGTACAGTGAAATCCG
GAAAGCTGACCCTGATTTAGTGGAAAACAGATATTCTAGAACGGAAGGCTCCCTTGATGG
GACTTAGGACCGCAGAGCAGACGCTCCTCTCCGGGAGGACACCGCATTCTGAGAAGAGCG
GACAGTCCTTGTGTTCCAAGAGTTTTGCGCACTTATTTATGAACCTGCCCTGCTCCCACT
GAATGTAGCAGTTCCTCAGGCCAAGTCACCACTTCTTCAATCCATCTTAGCTACATTTAT
GCTGGGTATAAAGAGAGAACGGTGGGGCTGGTTAATTTCCCACCCGGCCCGCCTCCCACC
ACATTGGAGCATCCCTGGGAGTGGAGAGCAGCTGCCGGAGGTTCAGAGTAAACTGGCCAT
TGGGACACTTTGAAACTTGAATATTTTGTCTTGTACAGAGATAAAGAACTTTTCCAAGTA
CCCTGATACACGGAAACCAGTATCTGATTTGTAGTCAATCACTTCTAGCGAATGGCCTGG
CATAGGGGCTAGCTTTTCTCTTTGCCTGTGGTCCTTCTGAGGTCTGTGGTTCTGGGCAGT
CCTTGTTTCTTGGAAGTACCGGGCATGGACTTGACAGCTGCACCCTGTCCCCTCTGTGAC
CTCGCCTGCCACAAATGCGAAAACAGAGCTGCTCGGGCACAACCCCTTTGAGATGCCGAC
TTGAAGACAAGGCTCCTTCTGGGCGATGCACCAAATTGAAAATGAAGTTGGACGAAGCAC
AGATGTTCTTAAGCTGTTTTTCTCTCCCCTTTCTTTCTCTTTCTCTACCTGCTGACGGCT
GAAGGATGGGAAGATGGTAGCCTACAGCAAATACTTTTTTAATAGAAAAAGGAAATGCAT
ATTTTTCTTACTAATTTTTAAAAATGTATTCCTTGCTAAAGGAATGGTCTCCCGAGATCT
TCCGACGTTTCTGATGGTGTCTTGAGTGGATGGACGGTGGGCTGCAGTGGGATCGCCCCA
GTGAGCACACCTAACCGAAATCACTTCCCCTGTCCTCCTCGGCGACACAGTCGCAGGGAC
CCGGCAGGGTGCTGTATTAAATAAATTTGATCTTTACTCTTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTGAGGTGATAAAAGGACAGACCATAGAAGTCAGTTGTCAATCCATAAACGGAACCTC
GCCCATTTCCTACCAACTTTTAAAAGGAAGTGACCTTCTGGCGAGTCAGAACGTGAGCTC
AAACGAGCCCGCGGTATTCAAAGATAACCCAACCAAAGACGTGGAATACCAGTGCATCGC
CGATAATTGCCATTCCCACGCCGGCATGCCCAGCAAAGTTCTGCGGGTCAAGGTGATAGC
CCCAGTGGAGGAAGTCAAGCTCTCTATTCTCCTGAGCGAGGAGGTGGAGTCTGGGCAGGC
CATTGTGCTTCAATGCTCCGTGAAAGAAGGATCTGGCCCCATCACGTACAAGTTTTACAA
AGAAAAGGAGAACAAGCCCTTCCACCAAGTCACCTTGAATGACACCCAGGCCATTTGGCA
CAAGCCAAAGGCTAGCAAGGATCAGGAGGGACAGTATTATTGCCTGGCCTCCAACAGAGC
CACCCCTTCCAAAAACTTCCTCCAAAGCAATATACTGGCAGTCAGAGTCTATCTTGCCCC
CTGGAAGAAAGGACTCATCGCAGTGGTTGTCATCGCAGTGATCATTGCCGTCTTGTTACT
TGGGGCCAGATTCTATTTTCTCAAGAAATCCAAGGCCAAGCAGATGCCCGTGGAGATGTG
CAGGCCAGCAGCACCACTTCTGAACTCCAACAATGAGAAGACATTGTCAGATCCCAATAC
TGAAGCCAACAGACACTATGGTTACAATGAAGATGTTGGAAACCATGCAATGAAACCATT
AAATGAAAACAAAGAGCCTCTGACCTTGGACGTGGAGTACACGGAAGTGGAAGTGACCTC
CCCTGAGCCTCACCGAGGTCTGGGAACAAAGGGCACGGAGACAGTGTACAGTGAAATCCG
GAAAGCTGACCCTGATTTAGTGGAAAACAGATATTCTAGAACGGAAGGCTCCCTTGATGG
GACTTAGGACCGCAGAGCAGACGCTCCTCTCCGGGAGGACACCGCATTCTGAGAAGAGCG
GACAGTCCTTGTGTTCCAAGAGTTTTGCGCACTTATTTATGAACCTGCCCTGCTCCCACT
GAATGTAGCAGTTCCTCAGGCCAAGTCACCACTTCTTCAATCCATCTTAGCTACATTTAT
GCTGGGTATAAAGAGAGAACGGTGGGGCTGGTTAATTTCCCACCCGGCCCGCCTCCCACC
ACATTGGAGCATCCCTGGGAGTGGAGAGCAGCTGCCGGAGGTTCAGAGTAAACTGGCCAT
TGGGACACTTTGAAACTTGAATATTTTGTCTTGTACAGAGATAAAGAACTTTTCCAAGTA
CCCTGATACACGGAAACCAGTATCTGATTTGTAGTCAATCACTTCTAGCGAATGGCCTGG
CATAGGGGCTAGCTTTTCTCTTTGCCTGTGGTCCTTCTGAGGTCTGTGGTTCTGGGCAGT
CCTTGTTTCTTGGAAGTACCGGGCATGGACTTGACAGCTGCACCCTGTCCCCTCTGTGAC
CTCGCCTGCCACAAATGCGAAAACAGAGCTGCTCGGGCACAACCCCTTTGAGATGCCGAC
TTGAAGACAAGGCTCCTTCTGGGCGATGCACCAAATTGAAAATGAAGTTGGACGAAGCAC
AGATGTTCTTAAGCTGTTTTTCTCTCCCCTTTCTTTCTCTTTCTCTACCTGCTGACGGCT
GAAGGATGGGAAGATGGTAGCCTACAGCAAATACTTTTTTAATAGAAAAAGGAAATGCAT
ATTTTTCTTACTAATTTTTAAAAATGTATTCCTTGCTAAAGGAATGGTCTCCCGAGATCT
TCCGACGTTTCTGATGGTGTCTTGAGTGGATGGACGGTGGGCTGCAGTGGGATCGCCCCA
GTGAGCACACCTAACCGAAATCACTTCCCCTGTCCTCCTCGGCGACACAGTCGCAGGGAC
CCGGCAGGGTGCTGTATTAAATAAATTTGATCTTTACTCTTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|30387840|gb|AAP32038.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|30387840|gb|AAP32038.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               238-527, gnl|bosTau2|chr19 (42559508-42559222)
               

               
               238-527, gnl|Hg17|chr17 (59787494-59787205)
               

               
               238-527, gnl|Mm7|chr11 (106794291-106794002)
               


               
               938-1963, gnl|bosTau2|chr19 (42530160-42529121)
               

               
               938-1963, gnl|Hg17|chr17 (59754937-59753597)
               

               
               938-1963, gnl|Mm7|chr11 (106764203-106763258)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               238-527, gnl|bosTau2|chr19 (42559508-42559222)
               

               
               238-527, gnl|Hg17|chr17 (59787494-59787205)
               

               
               238-527, gnl|Mm7|chr11 (106794291-106794002)
               


               
               938-1963, gnl|bosTau2|chr19 (42530160-42529121)
               

               
               938-1963, gnl|Hg17|chr17 (59754937-59753597)
               

               
               938-1963, gnl|Mm7|chr11 (106764203-106763258)

Expressed library(ies): 34 entry(ies)

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Expressed library(ies): 34 entry(ies)

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               cty (0.5204)
               

               
               pro (0.512033)
               

               
               cly (0.482567)
               

               
               jca (0.45584)
               

               
               fat (0.442282)
               

               
               lnt (0.426925)
               

               
               hea (0.408998)
               

               
               ssp (0.406559)
               

               
               elu (0.385356)
               

               
               ill (0.351185)
               

               
               cga (0.279096)
               

               
               tra (0.246184)
               

               
               eru (0.240096)
               

               
               fli (0.202881)
               

               
               ldo (0.194005)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)

Expressed library(ies): 34 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.5204)
               

               
               pro (0.512033)
               

               
               cly (0.482567)
               

               
               jca (0.45584)
               

               
               fat (0.442282)
               

               
               lnt (0.426925)
               

               
               hea (0.408998)
               

               
               ssp (0.406559)
               

               
               elu (0.385356)
               

               
               ill (0.351185)
               

               
               cga (0.279096)
               

               
               tra (0.246184)
               

               
               eru (0.240096)
               

               
               fli (0.202881)
               

               
               ldo (0.194005)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)

	238-527, gnl\|bosTau2\|chr19 (42559508-42559222)
	238-527, gnl\|Hg17\|chr17 (59787494-59787205)
	238-527, gnl\|Mm7\|chr11 (106794291-106794002)

	938-1963, gnl\|bosTau2\|chr19 (42530160-42529121)
	938-1963, gnl\|Hg17\|chr17 (59754937-59753597)
	938-1963, gnl\|Mm7\|chr11 (106764203-106763258)

	cty (0.5204)
	pro (0.512033)
	cly (0.482567)
	jca (0.45584)
	fat (0.442282)
	lnt (0.426925)
	hea (0.408998)
	ssp (0.406559)
	elu (0.385356)
	ill (0.351185)
	cga (0.279096)
	tra (0.246184)
	eru (0.240096)
	fli (0.202881)
	ldo (0.194005)
	nep (0.183925)
	fty (0.17584)
	ton (0.1755)
	rec (0.17307)
	cki (0.165235)
	csp (0.161186)
	eli (0.151814)
	cag (0.151194)
	pty (0.142714)
	csk (0.140746)
	nca (0.136874)
	che (0.136314)
	ste (0.135208)
	pla (0.133672)
	ret (0.128733)
	ese (0.126502)
	bla (0.124347)
	clu (0.119646)
	pgl (0.118483)