Non-Coding RNA Search

Ss1.1-Pig4-TMW8053E03.3

Sequence:


               
               TGTTGGCTCTTTCTGCCTCTTCATATTTGACATGTGTGAGAGAGGGGTTCAACTCACCAA
TCCCTTCTACAGTATCTGGACTACAGATGTTGGAACAGAGCTGGCTATGGCCTTCATCAT
TGTGGCTGGGATCTGCCTCTGCCTCTACTTCCTGTTTCTGTGCTTCATGGTCTTTCAGGT
GTTTCGGAACATCAGCGGGAAGCAGTCCAGCCTGCCAGCCATGAGCAAAGTCCGGCGACT
GCACTATGAGGGGCTAATTTTCAGGTTCAAGTTTCTCATGCTTATCACCTTGGCCTGTGC
TGCCATGACTGTCATCTTCTTCATTGTTAGTCAGGTGACTGAAGGCCACTGGAAGTGGGG
CGGTGTTACGGTCCAAGTGAACAGTGCCTTTTTCACGGGCATCTATGGGATGTGGAACCT
GTATGTCTTTGCTCTGATGTTCTTGTATGCACCATCCCACAAGAACTATGGGGAGGACCA
GTCCAACGGCGATCTGGGTGTCCACAGTGGGGAAGAACTCCAGCTCACCACCACCATCAC
CCACGTGGACGGACCCACCGAGATCTACAAGTTGACCCGCAAGGAGGCCCAGGAGTAGGA
GGCTGCAGCACCCGGCTGGGACTGTCCCCCATGCCCTGGCCCCTCTCACTAGAGTGGGGA
GCGTGCCAGAGAGCTCCATGTGCAAACAAATGCTCCGTCTCTGAGCTGTGGTTTCTTGGA
CCAGCGGCGTGGACGTTTGTCAGCTTGCCTCCTGACGGTCGCTCTTGGAGGAAGAGCCCT
ATAGCCACTAATGTGTTGTGTATGATAACAAAACCTCTGGTATGACACATTTTTTGGTGA
TCATTGTTAATTAGTGACATAGTAACATCTGTAGCAGGTGGTTAGTAAACCTCATGTGTT
GGGGGTGCGCTCCTTGGGGGATGGTTTGGGCCAGATGGGGTCTATATGGAGTGGAATATT
TGACAATTTCTTTTTCCTATTTTAGATTCTAGCATAGAATGTAACATCCTCTGCAGTCCA
AGATGGGCTGGTGTCATAGTCTTCTCACTCCTAGTCCATGACATGACCACTTTTTTTTTT
TCCCTATTTATATCACCAAGTAGCCTATTGAGTTAATATTTAAGTTGTATCCCTATTTTT
ATGACATAATATAAAATAATTGAATTTCATGAGAAGGTTCTGTTACACCAGGGGCATTTC
AGCTTTGAAACCAAATCTGTATATCCAATACTAACCAGTCTGTTGGATGTGGGTTTTTAA
AAAATGTTTGCTAAACTACCCAAGTAGGATTTATTGTATTAAATGGCCTTTGGGTCTGAA
AAGCTTTTTTAACCTCTTGCTTAAAATGTGTTTTCTTTCCATCAGATGCTTCAAACAGCC
TCTGAAAATGTAGATGCAATCATTTAAATAAACCTGTATGTATATGCCTACATGTATATG
CACACGTCGTCCTCCTCAACCAGGACACGTGAATGCAGATTCTTCTCCATGTTGCATCTT
TGGGGTGGAAAGGAAATAGCTTTATGAAAAATTAAAGTATTTTGCATCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTGGCTCTTTCTGCCTCTTCATATTTGACATGTGTGAGAGAGGGGTTCAACTCACCAA
TCCCTTCTACAGTATCTGGACTACAGATGTTGGAACAGAGCTGGCTATGGCCTTCATCAT
TGTGGCTGGGATCTGCCTCTGCCTCTACTTCCTGTTTCTGTGCTTCATGGTCTTTCAGGT
GTTTCGGAACATCAGCGGGAAGCAGTCCAGCCTGCCAGCCATGAGCAAAGTCCGGCGACT
GCACTATGAGGGGCTAATTTTCAGGTTCAAGTTTCTCATGCTTATCACCTTGGCCTGTGC
TGCCATGACTGTCATCTTCTTCATTGTTAGTCAGGTGACTGAAGGCCACTGGAAGTGGGG
CGGTGTTACGGTCCAAGTGAACAGTGCCTTTTTCACGGGCATCTATGGGATGTGGAACCT
GTATGTCTTTGCTCTGATGTTCTTGTATGCACCATCCCACAAGAACTATGGGGAGGACCA
GTCCAACGGCGATCTGGGTGTCCACAGTGGGGAAGAACTCCAGCTCACCACCACCATCAC
CCACGTGGACGGACCCACCGAGATCTACAAGTTGACCCGCAAGGAGGCCCAGGAGTAGGA
GGCTGCAGCACCCGGCTGGGACTGTCCCCCATGCCCTGGCCCCTCTCACTAGAGTGGGGA
GCGTGCCAGAGAGCTCCATGTGCAAACAAATGCTCCGTCTCTGAGCTGTGGTTTCTTGGA
CCAGCGGCGTGGACGTTTGTCAGCTTGCCTCCTGACGGTCGCTCTTGGAGGAAGAGCCCT
ATAGCCACTAATGTGTTGTGTATGATAACAAAACCTCTGGTATGACACATTTTTTGGTGA
TCATTGTTAATTAGTGACATAGTAACATCTGTAGCAGGTGGTTAGTAAACCTCATGTGTT
GGGGGTGCGCTCCTTGGGGGATGGTTTGGGCCAGATGGGGTCTATATGGAGTGGAATATT
TGACAATTTCTTTTTCCTATTTTAGATTCTAGCATAGAATGTAACATCCTCTGCAGTCCA
AGATGGGCTGGTGTCATAGTCTTCTCACTCCTAGTCCATGACATGACCACTTTTTTTTTT
TCCCTATTTATATCACCAAGTAGCCTATTGAGTTAATATTTAAGTTGTATCCCTATTTTT
ATGACATAATATAAAATAATTGAATTTCATGAGAAGGTTCTGTTACACCAGGGGCATTTC
AGCTTTGAAACCAAATCTGTATATCCAATACTAACCAGTCTGTTGGATGTGGGTTTTTAA
AAAATGTTTGCTAAACTACCCAAGTAGGATTTATTGTATTAAATGGCCTTTGGGTCTGAA
AAGCTTTTTTAACCTCTTGCTTAAAATGTGTTTTCTTTCCATCAGATGCTTCAAACAGCC
TCTGAAAATGTAGATGCAATCATTTAAATAAACCTGTATGTATATGCCTACATGTATATG
CACACGTCGTCCTCCTCAACCAGGACACGTGAATGCAGATTCTTCTCCATGTTGCATCTT
TGGGGTGGAAAGGAAATAGCTTTATGAAAAATTAAAGTATTTTGCATCAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10439666|dbj|BAB15540.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10439666|dbj|BAB15540.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               290-1497, + strand, RNAz p=0.985783

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               290-1497, + strand, RNAz p=0.985783

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               251-486, gnl|bosTau2|chr19 (7952343-7952569)
               


               
               1381-1558, gnl|bosTau2|chr11 (9094096-9093916)
               

               
               1381-1558, gnl|Hg17|chr1 (68303147-68302962)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               251-486, gnl|bosTau2|chr19 (7952343-7952569)
               


               
               1381-1558, gnl|bosTau2|chr11 (9094096-9093916)
               

               
               1381-1558, gnl|Hg17|chr1 (68303147-68302962)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               bla (0.621736)
               

               
               amn (0.417711)
               

               
               ste (0.405625)
               

               
               gul (0.355177)
               

               
               hyp (0.285673)
               

               
               ute (0.265569)
               

               
               ese (0.253004)
               

               
               aor (0.195274)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.621736)
               

               
               amn (0.417711)
               

               
               ste (0.405625)
               

               
               gul (0.355177)
               

               
               hyp (0.285673)
               

               
               ute (0.265569)
               

               
               ese (0.253004)
               

               
               aor (0.195274)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	251-486, gnl\|bosTau2\|chr19 (7952343-7952569)

	1381-1558, gnl\|bosTau2\|chr11 (9094096-9093916)
	1381-1558, gnl\|Hg17\|chr1 (68303147-68302962)

	bla (0.621736)
	amn (0.417711)
	ste (0.405625)
	gul (0.355177)
	hyp (0.285673)
	ute (0.265569)
	ese (0.253004)
	aor (0.195274)
	mga (0.160205)
	fat (0.147427)
	nca (0.136874)
	ssp (0.13552)
	nmm (0.132802)
	cov (0.132153)
	tra (0.123092)
	eep (0.122564)
	ebs (0.118301)
	jca (0.11396)
	spc (0.113366)
	ldo (0.0970026)