Non-Coding RNA Search

Ss1.1-Pig4-TMW8053E10.5

Sequence:


               
               GTGAAACTTCTGTGAACATGAAGAAATTATTAAAAAAGGCATTTAAATGAAATTTGCTAA
GTTGTGATTTTTATGGTTGGAACCAAAGTTATTCAAATAGTGAAAGAAAAAAGAGAAAGA
AAAGGAAATCTCCCATAATATTTTTCTGCATCTGTTTGCTTTGACTAAGTAGGCGTTTTG
TCATTATTGTGTATATGAGATGTACTTGTATTGTTCATAATATATTTTTTTTATTATGTG
TAGAAAGATTTTAAAAACTAACGTGCAGCAATTTCCAGTGAACCTGTTCTTGGACATCAG
GTAGTGAGTCTATTTGTGGTCACTAGCACTGTCTCCTAAACTTGTAAGAAGTCTGAAGCT
ACCCTTTGATTTTTGCCAGTGCTATTAACTTATGTAGACCTGTTAAAAAGCAGAGCAACA
CAATTATAGTTATCCTGAGCCATGGATTCTGAGCTTCATTTTAAAAGTGAAAGCCAAGTT
GGTGTATGTAAAGGATTTCCATGTAGCTGTGGTGCTAGTTATTACTGGCTACATTATATG
CTAATGTATTTGTGTTCCCCAAGTGTACAAGCCTTTTATCAAAAGTATGTTCTATAACTC
ATATATTCAAGGTGTAGGGTATGAAAATGCAAAGCTTAGGAGAGCACTTTACAAAGCTGG
TGTCCTCCAAACTGAAATTGTTTGTAACGATAGTCTTTTACAGGTTTTCATTTAAAGATG
TTCGTGTGCTTTTAATTGACAACTAACTTCTTGCTGCTGTATAGTAAAATATTAATATAT
TTTTATCATTAAACTGCTGCATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAAACTTCTGTGAACATGAAGAAATTATTAAAAAAGGCATTTAAATGAAATTTGCTAA
GTTGTGATTTTTATGGTTGGAACCAAAGTTATTCAAATAGTGAAAGAAAAAAGAGAAAGA
AAAGGAAATCTCCCATAATATTTTTCTGCATCTGTTTGCTTTGACTAAGTAGGCGTTTTG
TCATTATTGTGTATATGAGATGTACTTGTATTGTTCATAATATATTTTTTTTATTATGTG
TAGAAAGATTTTAAAAACTAACGTGCAGCAATTTCCAGTGAACCTGTTCTTGGACATCAG
GTAGTGAGTCTATTTGTGGTCACTAGCACTGTCTCCTAAACTTGTAAGAAGTCTGAAGCT
ACCCTTTGATTTTTGCCAGTGCTATTAACTTATGTAGACCTGTTAAAAAGCAGAGCAACA
CAATTATAGTTATCCTGAGCCATGGATTCTGAGCTTCATTTTAAAAGTGAAAGCCAAGTT
GGTGTATGTAAAGGATTTCCATGTAGCTGTGGTGCTAGTTATTACTGGCTACATTATATG
CTAATGTATTTGTGTTCCCCAAGTGTACAAGCCTTTTATCAAAAGTATGTTCTATAACTC
ATATATTCAAGGTGTAGGGTATGAAAATGCAAAGCTTAGGAGAGCACTTTACAAAGCTGG
TGTCCTCCAAACTGAAATTGTTTGTAACGATAGTCTTTTACAGGTTTTCATTTAAAGATG
TTCGTGTGCTTTTAATTGACAACTAACTTCTTGCTGCTGTATAGTAAAATATTAATATAT
TTTTATCATTAAACTGCTGCATGA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-804, gnl|bosTau2|chr7 (29552602-29551790)
               

               
               1-804, gnl|Hg17|chr5 (139475692-139476499)
               

               
               1-804, gnl|Mm7|chr18 (36665006-36665818)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-804, gnl|bosTau2|chr7 (29552602-29551790)
               

               
               1-804, gnl|Hg17|chr5 (139475692-139476499)
               

               
               1-804, gnl|Mm7|chr18 (36665006-36665818)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               duo (0.172801)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               nbm (0.0993246)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               nbm (0.0993246)

	1-804, gnl\|bosTau2\|chr7 (29552602-29551790)
	1-804, gnl\|Hg17\|chr5 (139475692-139476499)
	1-804, gnl\|Mm7\|chr18 (36665006-36665818)