Ss1.1-Pig4-TMW8053E11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATTTTCTATTTGTTCCTAATATATAGAAATACAGTTGATTTTTTTTCTAAATGACCATG GATCTAGCGACAAGGTAGGTTAATTTTAATATTTGAATTGGTTTTATGAACATCGGTTCT TTTATTTTGTTCTTGTTAAAGTGAATGTAGAAGTTGTTTTTCACTCTTTTGCAGTGATTT GCAGAGATAGCGCTCAACCCACAGTCATTATCAGCTTTACTCATGCTTCTTGTGATTTTA TTTGGTGACTAAACATATGTAATGACCATGGGGATTTTTTCTTCAGTTCTTCGAGTACAG CAGCCCCAGGTGGTTCCGCTGTTTGGGGACATGCAAATAGAACTGGCAAGATACATCAAG ACCAGCGCTCACTATGAGGAAAATAAATCTCGGTGGACGTGCACATCCTCTAGCAGCAGC CCACAGTACAACATCTGCGAGCAGATGGTCCAGATCCGAGAGGACCACATGCGCTTCATC TCGGAGCTGGCACGATATAGCAACAGCGAGGTGGTCACAGGCTCGGGCCGCCAGGAGGCT CAGAAGACAGACGCTGAGTACCGGAAGCTCTTCGACCTGGCACTGCAGGGCCTGCAGCTG CTGTCGCAGTGGAGCGCTCACGTGATGGAAGTGTACTCATGGAAACTTGTGCACCCAACG GACAAGTACTCCAACAAGGACTGCCCCGACAATGCTGAGGAGTATGAGCGGGCCACCCGC TACAACTACACCAGTGAGGAGAAGTTTGCCCTGGTGGAGGTGATTGCCATGATCAAAGGC TTGCAGGTCCTGATGGGCAGGATGGAGAGCGTGTTCAACCATGCCATCCGCCACACCGTC TACGCTGCACTGCAGGACTTCTCCCAGGTCACCCTCAGGGAGCCGCTCAGGCAAGCCATC AAGAAGAAGAAGAACGTTATCCAGAGTGTCCTGCAGGCCATCAGGAAGACCGTGTGTGAC TGGGAGACAGGGCACGAACCCTTCAATGACCCTGCCCTTCGGGGTGAGAAGGACCCCAAG AGTGGCTTCGACATTAAAGTGCCTCGGCGCGCCGTGGGACCCTCTAGCACCCAGCTTTAC ATGGTGAGAACCATGCTAGAGTCCCTCATTGCAGACAAAAGTGGTTCCAAGAAAACCCTG AGGAGTAGCCTTGAGGGGCCCACCATATTGGACATTGAAAAATTTCATCGCGAGTCATTC TTCTACACCCACTTGATAAATTTCAGTGAGACGCTCCAGCAGTGCTGTGACCTTTCACAG TTGTGGTTCCGAGAGTTCTTCCTGGAGCTGACCATGGGTAGAAGGATCCAGTTCCCCATT GAGATGTCCATGCCCTGGATCCTGACAGACCATATCCTGGAGACCAAGGAGGCATCGATG ATGGAGTACGTCCTCTACTCACTGGACCTGTACAATGATAGTGCCCACTACGCCCTCACC AGGTTCAACAAGCAGTTTCTCTACGATGAAATCGAGGCAGAGGTGAATCTATGCTTTGAC CAATTTGTTTAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATTTTCTATTTGTTCCTAATATATAGAAATACAGTTGATTTTTTTTCTAAATGACCATG GATCTAGCGACAAGGTAGGTTAATTTTAATATTTGAATTGGTTTTATGAACATCGGTTCT TTTATTTTGTTCTTGTTAAAGTGAATGTAGAAGTTGTTTTTCACTCTTTTGCAGTGATTT GCAGAGATAGCGCTCAACCCACAGTCATTATCAGCTTTACTCATGCTTCTTGTGATTTTA TTTGGTGACTAAACATATGTAATGACCATGGGGATTTTTTCTTCAGTTCTTCGAGTACAG CAGCCCCAGGTGGTTCCGCTGTTTGGGGACATGCAAATAGAACTGGCAAGATACATCAAG ACCAGCGCTCACTATGAGGAAAATAAATCTCGGTGGACGTGCACATCCTCTAGCAGCAGC CCACAGTACAACATCTGCGAGCAGATGGTCCAGATCCGAGAGGACCACATGCGCTTCATC TCGGAGCTGGCACGATATAGCAACAGCGAGGTGGTCACAGGCTCGGGCCGCCAGGAGGCT CAGAAGACAGACGCTGAGTACCGGAAGCTCTTCGACCTGGCACTGCAGGGCCTGCAGCTG CTGTCGCAGTGGAGCGCTCACGTGATGGAAGTGTACTCATGGAAACTTGTGCACCCAACG GACAAGTACTCCAACAAGGACTGCCCCGACAATGCTGAGGAGTATGAGCGGGCCACCCGC TACAACTACACCAGTGAGGAGAAGTTTGCCCTGGTGGAGGTGATTGCCATGATCAAAGGC TTGCAGGTCCTGATGGGCAGGATGGAGAGCGTGTTCAACCATGCCATCCGCCACACCGTC TACGCTGCACTGCAGGACTTCTCCCAGGTCACCCTCAGGGAGCCGCTCAGGCAAGCCATC AAGAAGAAGAAGAACGTTATCCAGAGTGTCCTGCAGGCCATCAGGAAGACCGTGTGTGAC TGGGAGACAGGGCACGAACCCTTCAATGACCCTGCCCTTCGGGGTGAGAAGGACCCCAAG AGTGGCTTCGACATTAAAGTGCCTCGGCGCGCCGTGGGACCCTCTAGCACCCAGCTTTAC ATGGTGAGAACCATGCTAGAGTCCCTCATTGCAGACAAAAGTGGTTCCAAGAAAACCCTG AGGAGTAGCCTTGAGGGGCCCACCATATTGGACATTGAAAAATTTCATCGCGAGTCATTC TTCTACACCCACTTGATAAATTTCAGTGAGACGCTCCAGCAGTGCTGTGACCTTTCACAG TTGTGGTTCCGAGAGTTCTTCCTGGAGCTGACCATGGGTAGAAGGATCCAGTTCCCCATT GAGATGTCCATGCCCTGGATCCTGACAGACCATATCCTGGAGACCAAGGAGGCATCGATG ATGGAGTACGTCCTCTACTCACTGGACCTGTACAATGATAGTGCCCACTACGCCCTCACC AGGTTCAACAAGCAGTTTCTCTACGATGAAATCGAGGCAGAGGTGAATCTATGCTTTGAC CAATTTGTTTAT |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 133-394, gnl|bosTau2|chr2 (910545-910811) | |
| 133-394, gnl|Hg17|chr15 (20490444-20490709) | |
| 133-394, gnl|Mm7|chr7 (52129053-52129312) | |
| 1072-1228, gnl|bosTau2|chr9 (24898419-24898575) | |
| 1072-1228, gnl|canFam2|chr3 (34987118-34986914) | |
| 1072-1228, gnl|danRer3|chr6 (18035742-18035564) | |
| 1072-1228, gnl|dasNov1|scaffold_17239 (21084-20882) | |
| 1072-1228, gnl|echTel1|scaffold_205457 (6097-5895) | |
| 1072-1228, gnl|fr1|chrUn (199724328-199724499) | |
| 1072-1228, gnl|galGal2|chr1 (123431722-123431926) | |
| 1072-1228, gnl|hg17|chr15 (20507874-20508078) | |
| 1072-1228, gnl|Hg17|chr15 (20507876-20508032) | |
| 1072-1228, gnl|loxAfr1|scaffold_79834 (323-121) | |
| 1072-1228, gnl|mm7|chr7 (52140726-52140932) | |
| 1072-1228, gnl|Mm7|chr7 (52140728-52140884) | |
| 1072-1228, gnl|monDom2|scaffold_11 (7873953-7874157) | |
| 1072-1228, gnl|oryCun1|scaffold_177915 (31579-31375) | |
| 1072-1228, gnl|panTro1|chr16 (26092484-26092280) | |
| 1072-1228, gnl|rheMac2|chr7 (1732471-1732674) | |
| 1072-1228, gnl|rn3|chr1 (107384208-107384414) | |
| 1072-1228, gnl|tetNig1|chr1_random (1212953-1212791) | |
| 1072-1228, gnl|xenTro1|scaffold_516 (429361-429566) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 133-394, gnl|bosTau2|chr2 (910545-910811) | |
| 133-394, gnl|Hg17|chr15 (20490444-20490709) | |
| 133-394, gnl|Mm7|chr7 (52129053-52129312) | |
| 1072-1228, gnl|bosTau2|chr9 (24898419-24898575) | |
| 1072-1228, gnl|canFam2|chr3 (34987118-34986914) | |
| 1072-1228, gnl|danRer3|chr6 (18035742-18035564) | |
| 1072-1228, gnl|dasNov1|scaffold_17239 (21084-20882) | |
| 1072-1228, gnl|echTel1|scaffold_205457 (6097-5895) | |
| 1072-1228, gnl|fr1|chrUn (199724328-199724499) | |
| 1072-1228, gnl|galGal2|chr1 (123431722-123431926) | |
| 1072-1228, gnl|hg17|chr15 (20507874-20508078) | |
| 1072-1228, gnl|Hg17|chr15 (20507876-20508032) | |
| 1072-1228, gnl|loxAfr1|scaffold_79834 (323-121) | |
| 1072-1228, gnl|mm7|chr7 (52140726-52140932) | |
| 1072-1228, gnl|Mm7|chr7 (52140728-52140884) | |
| 1072-1228, gnl|monDom2|scaffold_11 (7873953-7874157) | |
| 1072-1228, gnl|oryCun1|scaffold_177915 (31579-31375) | |
| 1072-1228, gnl|panTro1|chr16 (26092484-26092280) | |
| 1072-1228, gnl|rheMac2|chr7 (1732471-1732674) | |
| 1072-1228, gnl|rn3|chr1 (107384208-107384414) | |
| 1072-1228, gnl|tetNig1|chr1_random (1212953-1212791) | |
| 1072-1228, gnl|xenTro1|scaffold_516 (429361-429566) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ski (0.146735) |